Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 6.978510
2L:L:D2 9.6410
3L:L:P4 6.918510
4L:L:?5 10.265410
5R:R:N43 6.3925409
6R:R:N61 4.4675409
7R:R:Y63 8.7575408
8R:R:L67 6.6475419
9R:R:D71 8.096519
10R:R:W91 10.7129748
11R:R:Q105 6.88407
12R:R:L107 4.855405
13R:R:I109 5.06417
14R:R:F119 6.0725439
15R:R:Y124 7.158508
16R:R:I145 3.23406
17R:R:W150 4.4225409
18R:R:W160 20.91415
19R:R:F161 5.0775405
20R:R:Y181 6.41514
21R:R:R185 6.51833612
22R:R:Y188 9.856515
23R:R:Y192 8.14667615
24R:R:D195 11.4416
25R:R:F199 11.614515
26R:R:Y200 7.7525408
27R:R:Y211 8.032509
28R:R:F275 8.312519
29R:R:W279 10.205618
30R:R:Y282 12.654515
31R:R:R283 6.9375416
32R:R:S290 2.665414
33R:R:F301 5.298514
34R:R:R306 16.094515
35R:R:I309 10.8725416
36R:R:Y310 7.166517
37R:R:N312 8.3025419
38R:R:Y320 6.2425439
39R:R:F327 6.65508
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 L:L:D2 18.725610.94YesYes100
2L:L:D2 R:R:Y282 20.443616.09YesYes105
3L:L:P4 R:R:Y282 29.75184.17YesYes105
4L:L:?5 R:R:R306 16.838621.05YesYes105
5L:L:P4 R:R:Q105 91.33969.47YesYes007
6R:R:R185 R:R:Y192 12.88868.23YesYes125
7L:L:?5 R:R:Y310 18.46868.7YesYes107
8R:R:P81 R:R:Q105 52.31836.32NoYes057
9R:R:P81 R:R:W91 44.77035.4NoYes058
10R:R:D85 R:R:W91 24.8097.82NoYes048
11R:R:I83 R:R:T84 12.48376.08NoNo064
12R:R:W91 R:R:Y93 10.350313.5YesNo086
13R:R:I309 R:R:Y282 64.11558.46YesYes165
14R:R:I309 R:R:W279 97.690510.57YesYes168
15R:R:N312 R:R:W279 39.746510.17YesYes198
16R:R:N312 R:R:N316 38.32784.09YesNo199
17R:R:D71 R:R:N316 29.60759.42YesNo199
18R:R:D71 R:R:N43 33.2976.73YesYes099
19R:R:L72 R:R:N43 10.79042.75NoYes079
20R:R:A68 R:R:N43 15.63114.69NoYes099
21R:R:A68 R:R:V46 11.57195.09NoNo099
22R:R:N321 R:R:V46 10.30455.91NoNo079
23R:R:F275 R:R:W279 10015.03YesYes198
24R:R:F275 R:R:I116 88.86116.28YesNo098
25R:R:I116 R:R:Y320 85.118810.88NoYes089
26R:R:F119 R:R:Y320 31.6814.13YesYes399
27R:R:F119 R:R:T60 21.93286.49YesNo099
28R:R:T58 R:R:T60 20.8524.71NoNo079
29R:R:N61 R:R:T58 16.28945.85YesNo097
30R:R:F119 R:R:Y63 14.70876.19YesYes098
31R:R:I116 R:R:L67 15.55365.71NoYes089
32R:R:L67 R:R:S115 15.7054.5YesNo098
33R:R:S115 R:R:S66 13.43434.89NoNo089
34R:R:Q105 R:R:T102 38.84185.67YesNo074
35R:R:L164 R:R:T102 36.84564.42NoNo054
36R:R:L164 R:R:L99 35.12764.15NoNo055
37R:R:F161 R:R:L99 25.00623.65YesNo055
38R:R:F161 R:R:Y103 18.84887.22YesNo056
39R:R:C157 R:R:Y103 14.70878.06NoNo076
40R:R:C157 R:R:L107 12.62816.35NoYes075
41R:R:D85 R:R:V92 14.62425.84NoNo044
42R:R:V92 R:R:Y88 12.55416.31NoNo045
43R:R:S90 R:R:Y88 10.47710.17NoNo055
44R:R:I109 R:R:R306 45.33365.01YesYes175
45R:R:I109 R:R:R283 11.44163.76YesYes176
46R:R:R283 R:R:W279 14.648811YesYes168
47R:R:F275 R:R:P203 19.10232.89YesNo099
48R:R:P203 R:R:V202 17.72933.53NoNo095
49R:R:T117 R:R:V202 15.04664.76NoNo075
50R:R:R123 R:R:Y320 23.42556.17NoYes399
51R:R:R123 R:R:Y211 26.326411.32NoYes099
52R:R:V271 R:R:Y320 31.06853.79NoYes089
53R:R:V271 R:R:Y211 23.02763.79NoYes089
54R:R:I121 R:R:T117 13.80391.52NoNo067
55R:R:I121 R:R:I125 12.86751.47NoNo064
56R:R:I125 R:R:Y124 10.99452.42NoYes048
57R:R:T120 R:R:Y211 12.57882.5NoYes089
58R:R:L268 R:R:Y211 30.966418.76NoYes089
59R:R:I214 R:R:L268 14.27574.28NoNo098
60R:R:G180 R:R:Y181 16.20841.45NoYes034
61R:R:G180 R:R:N167 14.4131.7NoNo031
62R:R:I177 R:R:N167 12.61058.5NoNo041
63R:R:R185 R:R:S290 13.86021.32YesYes124
64R:R:R283 R:R:Y200 19.33468.23YesYes068
65R:R:M280 R:R:Y200 10.63558.38NoYes068
66R:R:L268 R:R:T265 14.76151.47NoNo088
67L:L:P4 R:R:Y106 16.76474.17YesNo105
68R:R:V286 R:R:Y192 19.14810.09NoYes165
69R:R:V286 R:R:Y282 19.93318.83NoYes165
70L:L:P4 R:R:R306 61.67588.65YesYes105
71R:R:I109 R:R:W279 36.15917.05YesYes178
72R:R:I309 R:R:R306 35.856420.04YesYes165
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:Y181 6.3 1 Yes Yes 0 4 0 1
L:L:?1 R:R:R185 6.53 1 Yes Yes 0 2 0 1
L:L:?1 R:R:N289 5.54 1 Yes No 0 4 0 1
L:L:?1 R:R:L302 5.58 1 Yes No 0 4 0 1
L:L:D2 R:R:Y282 16.09 1 Yes Yes 0 5 0 1
L:L:D2 R:R:V286 7.3 1 Yes No 0 6 0 1
L:L:D2 R:R:L302 4.07 1 Yes No 0 4 0 1
L:L:P4 R:R:Q105 9.47 1 Yes Yes 0 7 0 1
L:L:P4 R:R:Y106 4.17 1 Yes No 0 5 0 1
L:L:P4 R:R:Y282 4.17 1 Yes Yes 0 5 0 1
L:L:P4 R:R:R306 8.65 1 Yes Yes 0 5 0 1
L:L:?5 R:R:R306 21.05 1 Yes Yes 0 5 0 1
L:L:?5 R:R:Y310 8.7 1 Yes Yes 0 7 0 1
R:R:V32 R:R:Y310 3.79 0 No Yes 7 7 2 1
R:R:C36 R:R:G79 3.92 1 No No 6 7 2 2
R:R:C36 R:R:Y310 9.41 1 No Yes 6 7 2 1
R:R:A78 R:R:Q105 6.06 0 No Yes 7 7 2 1
R:R:G79 R:R:Y310 5.79 1 No Yes 7 7 2 1
R:R:P81 R:R:Q105 6.32 0 No Yes 5 7 2 1
R:R:N82 R:R:Y310 8.14 0 No Yes 6 7 2 1
R:R:Q105 R:R:T102 5.67 0 Yes No 7 4 1 2
R:R:W160 R:R:Y106 41.48 1 Yes No 5 5 2 1
R:R:Y106 R:R:Y192 8.94 1 No Yes 5 5 1 2
R:R:I109 R:R:R306 5.01 1 Yes Yes 7 5 2 1
R:R:I109 R:R:I309 4.42 1 Yes Yes 7 6 2 2
R:R:W160 R:R:Y188 14.47 1 Yes Yes 5 5 2 2
R:R:W160 R:R:Y192 7.72 1 Yes Yes 5 5 2 2
R:R:R185 R:R:Y181 13.38 1 Yes Yes 2 4 1 1
R:R:Y181 R:R:Y188 3.97 1 Yes Yes 4 5 1 2
R:R:Y181 R:R:Y192 6.95 1 Yes Yes 4 5 1 2
R:R:R185 R:R:Y192 8.23 1 Yes Yes 2 5 1 2
R:R:N289 R:R:R185 8.44 1 No Yes 4 2 1 1
R:R:Y188 R:R:Y192 6.95 1 Yes Yes 5 5 2 2
R:R:V286 R:R:Y192 10.09 1 No Yes 6 5 1 2
R:R:V286 R:R:Y282 8.83 1 No Yes 6 5 1 1
R:R:R306 R:R:Y282 25.72 1 Yes Yes 5 5 1 1
R:R:I309 R:R:Y282 8.46 1 Yes Yes 6 5 2 1
R:R:N289 R:R:P295 4.89 1 No No 4 1 1 2
R:R:I309 R:R:R306 20.04 1 Yes Yes 6 5 2 1
R:R:G180 R:R:Y181 1.45 0 No Yes 3 4 2 1
R:R:R185 R:R:S290 1.32 1 Yes Yes 2 4 1 2
R:R:N186 R:R:R185 1.21 0 No Yes 2 2 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7X1T_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.68
Number of Linked Nodes 258
Number of Links 292
Number of Hubs 39
Number of Links mediated by Hubs 140
Number of Communities 6
Number of Nodes involved in Communities 60
Number of Links involved in Communities 87
Path Summary
Number Of Nodes in MetaPath 73
Number Of Links MetaPath 72
Number of Shortest Paths 60513
Length Of Smallest Path 3
Average Path Length 13.471
Length of Longest Path 26
Minimum Path Strength 1.265
Average Path Strength 7.40511
Maximum Path Strength 23.385
Minimum Path Correlation 0.7
Average Path Correlation 0.921433
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 5
Average % Of Corr. Nodes 48.6068
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 51.7949
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process• cellular response to nitrogen compound   • cellular response to stimulus   • response to dopamine   • regulation of cellular process   • response to stimulus   • signaling   • cellular response to dopamine   • response to monoamine   • cell communication   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • signal transduction   • regulation of biological process   • G protein-coupled dopamine receptor signaling pathway   • biological regulation   • response to oxygen-containing compound   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to monoamine stimulus   • response to chemical   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • cellular process   • G protein-coupled receptor signaling pathway   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to alcohol   • response to hormone   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • cell periphery   • cellular anatomical structure   • plasma membrane   • membrane   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex
Gene OntologyCellular Component• cell periphery   • cellular anatomical structure   • plasma membrane   • membrane   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • molecular transducer activity   • G protein-coupled receptor activity   • transmembrane signaling receptor activity   • signaling receptor activity   • thyrotropin-releasing hormone receptor activity   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • cell communication   • phospholipase C-activating G protein-coupled receptor signaling pathway   • protein-containing complex binding   • binding   • protein binding   • enzyme binding   • GTPase binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • cell population proliferation   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • response to oxygen-containing compound   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to monoamine stimulus   • response to chemical   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to alcohol   • response to hormone   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • membrane-bounded organelle   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • neuron projection   • photoreceptor disc membrane   • photoreceptor outer segment   • plasma membrane bounded cell projection   • cell projection   • photoreceptor cell cilium   • organelle   • organelle membrane   • synapse   • cell junction   • intracellular anatomical structure   • cytoplasm
SCOP2Domain Identifier• WD40 repeat-like
SCOP2Family Identifier• WD40 repeat-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeRGI
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeRGI
NameMETHYLCARBAMIC ACID
Synonyms
Identifier
FormulaC2 H5 N O2
Molecular Weight75.067
SMILES
PubChem30536
Formal Charge0
Total Atoms10
Total Chiral Atoms0
Total Bonds9
Total Aromatic Bonds0

CodeNH2
PDB ResiduesL:L:?5
Environment DetailsOpen EMBL-EBI Page
CodeNH2
NameAMINO GROUP
Synonyms
Identifier
FormulaH2 N
Molecular Weight16.023
SMILES
PubChem123329
Formal Charge0
Total Atoms3
Total Chiral Atoms0
Total Bonds2
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP34981
Sequence
>7X1T_nogp_Chain_R
EYQVVTILL VLIICGLGI VGNIMVVLV VMRTKHMRT PTNCYLVSL 
AVADLMVLV AAGLPNITD SLYGSWVYG YVGCLCITY LQYLGINAS 
SCSITAFTI ERYIAICHP IKAQFLCTF SRAKKIIIF VWAFTSLYC 
MLWFFLLDL NISTYKDAI VISCGYKIS RNYYSPIYL MDFGVFYVV 
PMILATVLY GFIARILFL NKQVTKMLA VVVILFALL WMPYRTLVV 
VNSFLSSPF QENWFLLFC RICIYLNSA INPVIYNLM SQKFRAAFR 
KL


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7XW9APeptideThyrotropin Releasing HormoneTRHHomo sapiensTRH-chim(NtGi1L-Gs-CtGq)/β1/γ22.72022-12-2810.1038/s41421-022-00477-0
7XW9 (No Gprot) APeptideThyrotropin Releasing HormoneTRHHomo sapiensTRH-2.72022-12-2810.1038/s41421-022-00477-0
7X1UAPeptideThyrotropin Releasing HormoneTRHHomo sapiensTRH-chim(NtGi2L-Gs-CtGq)/β1/γ23.192022-08-3110.1038/s41422-022-00646-6
7X1U (No Gprot) APeptideThyrotropin Releasing HormoneTRHHomo sapiensTRH-3.192022-08-3110.1038/s41422-022-00646-6
7X1TAPeptideThyrotropin Releasing HormoneTRHHomo sapiensTaltirelin-chim(NtGi2L-Gs-CtGq)/β1/γ23.262022-08-3110.1038/s41422-022-00646-6
7X1T (No Gprot) APeptideThyrotropin Releasing HormoneTRHHomo sapiensTaltirelin-3.262022-08-3110.1038/s41422-022-00646-6
7WKDAPeptideThyrotropin Releasing HormoneTRHHomo sapiensTRH-chim(NtGi1-Gs-CtGq)/β1/γ23.012022-06-1510.1038/s41422-022-00641-x
7WKD (No Gprot) APeptideThyrotropin Releasing HormoneTRHHomo sapiensTRH-3.012022-06-1510.1038/s41422-022-00641-x




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 7X1T_nogp.zip



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