Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:F45 7.44833657
2R:R:L69 6.76428
3R:R:P72 3.965406
4R:R:Y74 6.45857728
5R:R:E94 6.75415
6R:R:T95 5.525455
7R:R:I113 3.81408
8R:R:D117 7.2525413
9R:R:D121 7.34667614
10R:R:I124 8.1575404
11R:R:D141 5.055449
12R:R:F147 10.076576
13R:R:Y152 6.852548
14R:R:F179 5.48333603
15R:R:I180 4.97167615
16R:R:I189 6.4775416
17R:R:F196 8.318507
18R:R:L206 3.64406
19R:R:Y207 4.56143739
20R:R:I244 2.8025407
21R:R:L248 2.875407
22R:R:W255 7.41714768
23R:R:F258 6.53405
24R:R:H261 9415
25R:R:C268 3.436584
26R:R:Y284 8.2075405
27R:R:I298 3.86539
28R:R:Y299 5.255639
29L:L:M3 7.3075400
30L:L:F6 6.36400
31L:L:R7 7.9275410
32L:L:W8 6.106510
33L:L:F11 4.3775410
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:F281 R:R:H261 16.490914.71NoYes035
2R:R:H261 R:R:Y284 34.4766.53YesYes055
3R:R:F281 R:R:L285 14.05686.09NoNo033
4R:R:F45 R:R:L285 15.53753.65YesNo073
5R:R:F45 R:R:T95 11.40649.08YesYes575
6R:R:F45 R:R:M289 27.21436.22YesNo076
7R:R:H261 R:R:I265 31.35239.28YesNo153
8L:L:F11 R:R:I265 35.62543.77YesNo103
9L:L:F11 R:R:I189 43.02913.77YesYes106
10R:R:I189 R:R:L262 31.69037.14YesNo065
11R:R:F258 R:R:L262 31.50786.09YesNo055
12R:R:F258 R:R:I288 1005.02YesNo056
13R:R:I288 R:R:W255 98.58698.22NoYes668
14R:R:N291 R:R:W255 51.406414.69NoYes098
15R:R:D295 R:R:N291 49.905312.12NoNo099
16R:R:D295 R:R:D84 22.4079.31NoNo099
17R:R:D84 R:R:N56 15.75398.08NoNo099
18R:R:N56 R:R:P296 12.34629.77NoNo099
19R:R:E55 R:R:P296 10.6224.72NoNo079
20R:R:M289 R:R:N91 30.7648.41NoNo066
21R:R:I124 R:R:N91 32.231211.33YesNo046
22R:R:I124 R:R:S90 51.54164.64YesNo045
23R:R:S90 R:R:V89 48.43141.62NoNo055
24R:R:L53 R:R:V89 46.8835.96NoNo065
25R:R:I57 R:R:L53 43.77284.28NoNo046
26R:R:I57 R:R:L61 42.2111.43NoNo045
27R:R:I60 R:R:L61 40.66261.43NoNo085
28R:R:C78 R:R:I60 39.11431.64NoNo078
29R:R:C78 R:R:V63 37.7625.12NoNo078
30R:R:L306 R:R:V63 36.92364.47NoNo088
31R:R:L306 R:R:Y74 33.40778.21NoYes288
32R:R:L77 R:R:Y74 12.44763.52NoYes088
33R:R:A300 R:R:L77 10.40573.15NoNo088
34R:R:L69 R:R:Y74 20.41249.38YesYes288
35R:R:L69 R:R:N66 16.5459.61YesNo087
36R:R:N66 R:R:T309 10.439510.24NoNo078
37R:R:S71 R:R:Y74 23.2593.82NoYes278
38R:R:P72 R:R:S71 23.38743.56YesNo067
39R:R:D295 R:R:L135 40.43958.14NoNo098
40R:R:L135 R:R:L80 37.60655.54NoNo089
41R:R:L80 R:R:N134 36.38274.12NoNo098
42R:R:N134 R:R:S79 33.921610.43NoNo089
43R:R:I165 R:R:S79 32.68424.64NoNo079
44R:R:F76 R:R:I165 31.46045.02NoNo077
45R:R:D141 R:R:F76 28.99935.97YesNo097
46R:R:D141 R:R:M156 20.54094.16YesNo498
47R:R:M156 R:R:P72 21.56195.03NoYes086
48R:R:I132 R:R:W255 43.17118.22NoYes078
49R:R:I132 R:R:M199 41.60245.83NoNo077
50R:R:C133 R:R:M199 16.5453.24NoNo057
51R:R:C133 R:R:C172 14.763.64NoNo058
52L:L:M3 R:R:I98 10.61538.75YesNo004
53L:L:M3 R:R:I113 33.44837.29YesYes008
54R:R:I113 R:R:M116 22.77212.92YesNo085
55R:R:M116 R:R:M97 13.46865.78NoNo054
56L:L:M3 R:R:D117 35.62549.7YesYes003
57R:R:E94 R:R:I124 14.65864.1YesYes054
58L:L:W8 R:R:I189 23.02914.7YesYes106
59L:L:W8 R:R:I180 26.84924.7YesYes105
60R:R:D121 R:R:I180 32.20424.2YesYes145
61L:L:F6 L:L:W8 36.89655.01YesYes000
62L:L:F6 R:R:D121 45.57813.58YesYes004
63L:L:F6 R:R:I124 49.634912.56YesYes004
64R:R:D117 R:R:D121 30.60185.32YesYes134
65R:R:I180 R:R:S122 12.86684.64YesNo054
66R:R:C125 R:R:I180 34.77353.27NoYes045
67R:R:C125 R:R:F179 28.55314.19NoYes043
68R:R:F251 R:R:W255 48.42465.01NoYes088
69R:R:F251 R:R:M203 47.396911.2NoNo088
70R:R:M203 R:R:Y207 46.74785.99NoYes089
71R:R:Y207 R:R:Y299 19.56733.97YesYes399
72R:R:L135 R:R:Y299 21.99464.69NoYes089
73R:R:L136 R:R:M199 25.17244.24NoNo077
74R:R:L136 R:R:L202 23.4556.92NoNo075
75R:R:L202 R:R:L206 21.72412.77NoYes056
76R:R:L206 R:R:Y143 16.45035.86YesNo068
77R:R:F147 R:R:Y143 12.819518.57YesNo768
78R:R:L248 R:R:Y207 35.8353.52YesYes079
79R:R:I244 R:R:L248 31.06152.85YesYes077
80R:R:F211 R:R:I244 24.46923.77NoYes067
81R:R:F211 R:R:G240 21.08863.01NoNo068
82R:R:G240 R:R:K239 17.7891.74NoNo088
83R:R:K239 R:R:Q234 16.05814.07NoNo084
84R:R:M238 R:R:Q234 14.31378.16NoNo044
85R:R:H235 R:R:M238 10.78431.31NoNo044
86R:R:I298 R:R:Y299 14.6186.04YesYes399
87R:R:Y277 R:R:Y284 20.750518.86NoYes015
88R:R:L264 R:R:Y277 16.70723.52NoNo051
89R:R:C268 R:R:L264 10.47334.76YesNo845
90R:R:K186 R:R:M187 11.98112.88NoNo045
91L:L:F6 R:R:F258 79.38474.29YesYes005
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:D9 R:R:Q37 6.53 0 No No 0 3 0 1
R:R:F45 R:R:I40 5.02 5 Yes No 7 5 1 2
R:R:F45 R:R:T95 9.08 5 Yes Yes 7 5 1 1
R:R:F45 R:R:L285 3.65 5 Yes No 7 3 1 2
R:R:F45 R:R:M289 6.22 5 Yes No 7 6 1 2
L:L:H5 R:R:F45 18.1 5 No Yes 0 7 0 1
R:R:L46 R:R:T95 4.42 0 No Yes 5 5 2 1
R:R:I124 R:R:S90 4.64 0 Yes No 4 5 1 2
R:R:I124 R:R:N91 11.33 0 Yes No 4 6 1 2
R:R:M289 R:R:N91 8.41 0 No No 6 6 2 2
R:R:D117 R:R:E94 6.5 1 Yes Yes 3 5 1 2
R:R:D121 R:R:E94 9.09 1 Yes Yes 4 5 1 2
R:R:E94 R:R:I124 4.1 1 Yes Yes 5 4 2 1
I:I:?1 R:R:E94 7.31 1 No Yes 0 5 2 2
L:L:H5 R:R:T95 6.85 5 No Yes 0 5 0 1
L:L:M3 R:R:I98 8.75 0 Yes No 0 4 0 1
L:L:H5 R:R:I98 5.3 5 No No 0 4 0 1
L:L:Y1 R:R:I113 3.63 0 No Yes 0 8 0 1
L:L:M3 R:R:I113 7.29 0 Yes Yes 0 8 0 1
L:L:Y1 R:R:Q114 11.27 0 No No 0 5 0 1
R:R:D117 R:R:D121 5.32 1 Yes Yes 3 4 1 1
L:L:M3 R:R:D117 9.7 0 Yes Yes 0 3 0 1
I:I:?1 R:R:D117 7.49 1 No Yes 0 3 2 1
R:R:I180 R:R:N118 4.25 1 Yes No 5 4 1 1
L:L:R7 R:R:N118 6.03 1 Yes No 0 4 0 1
R:R:D121 R:R:I180 4.2 1 Yes Yes 4 5 1 1
L:L:F6 R:R:D121 3.58 0 Yes Yes 0 4 0 1
L:L:R7 R:R:D121 11.91 1 Yes Yes 0 4 0 1
I:I:?1 R:R:D121 9.98 1 No Yes 0 4 2 1
R:R:I180 R:R:S122 4.64 1 Yes No 5 4 1 2
L:L:F6 R:R:I124 12.56 0 Yes Yes 0 4 0 1
L:L:R7 R:R:I180 8.77 1 Yes Yes 0 5 0 1
L:L:W8 R:R:I180 4.7 1 Yes Yes 0 5 0 1
L:L:W8 R:R:S183 11.12 1 Yes No 0 5 0 1
R:R:I266 R:R:K186 8.72 1 No No 3 4 1 1
L:L:F11 R:R:K186 6.2 1 Yes No 0 4 0 1
R:R:I189 R:R:L262 7.14 1 Yes No 6 5 1 2
R:R:I189 R:R:I266 10.3 1 Yes No 6 3 1 1
L:L:W8 R:R:I189 4.7 1 Yes Yes 0 6 0 1
L:L:F11 R:R:I189 3.77 1 Yes Yes 0 6 0 1
R:R:F258 R:R:F259 10.72 0 Yes No 5 6 1 2
R:R:F258 R:R:L262 6.09 0 Yes No 5 5 1 2
R:R:F258 R:R:I288 5.02 0 Yes No 5 6 1 2
L:L:F6 R:R:F258 4.29 0 Yes Yes 0 5 0 1
R:R:H261 R:R:I265 9.28 1 Yes No 5 3 2 1
R:R:H261 R:R:T278 5.48 1 Yes No 5 3 2 2
R:R:F281 R:R:H261 14.71 0 No Yes 3 5 1 2
R:R:I265 R:R:T278 4.56 1 No No 3 3 1 2
L:L:F11 R:R:I265 3.77 1 Yes No 0 3 0 1
L:L:F11 R:R:I266 3.77 1 Yes No 0 3 0 1
R:R:F281 R:R:L285 6.09 0 No No 3 3 1 2
L:L:D9 R:R:F281 17.91 0 No No 0 3 0 1
R:R:C125 R:R:I180 3.27 0 No Yes 4 5 2 1
R:R:I113 R:R:M116 2.92 0 Yes No 8 5 1 2
R:R:K186 R:R:M187 2.88 1 No No 4 5 1 2
R:R:E184 R:R:S183 2.87 0 No No 4 5 2 1
R:R:F45 R:R:V286 2.62 5 Yes No 7 5 1 2
R:R:Q111 R:R:Q114 2.56 0 No No 2 5 2 1
R:R:P42 R:R:T95 1.75 0 No Yes 4 5 2 1
R:R:D110 R:R:I113 1.4 0 No Yes 6 8 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8IOC_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.42
Number of Linked Nodes 255
Number of Links 281
Number of Hubs 33
Number of Links mediated by Hubs 131
Number of Communities 8
Number of Nodes involved in Communities 44
Number of Links involved in Communities 59
Path Summary
Number Of Nodes in MetaPath 92
Number Of Links MetaPath 91
Number of Shortest Paths 38958
Length Of Smallest Path 3
Average Path Length 13.6851
Length of Longest Path 31
Minimum Path Strength 1.35
Average Path Strength 6.12258
Maximum Path Strength 17.685
Minimum Path Correlation 0.7
Average Path Correlation 0.936224
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.34783
Average % Of Corr. Nodes 55.9891
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 39.1202
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeCA
PDB ResiduesI:I:?1
Environment DetailsOpen EMBL-EBI Page
CodeCA
NameCALCIUM ION
Synonyms
Identifier
FormulaCa
Molecular Weight40.078
SMILES
PubChem
Formal Charge2
Total Atoms1
Total Chiral Atoms0
Total Bonds0
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP41968
Sequence
>8IOC_nogp_Chain_R
CEQVFIKPE VFLSLGIVS LLENILVIL AVVRNGNLH SPMYFFLCS 
LAVADMLVS VSNALETIM IAIVHSDYL TFEDQFIQH MDNIFDSMI 
CISLVASIC NLLAIAVDR YVTIFYALR YHSIMTVRK ALTLIVAIW 
VCCGVCGVV FIVYSESKM VIVCLITMF FAMMLLMGT LYVHMFLFA 
RLHVKRIAA LPPQHSCMK GAVTITILL GVFIFCWAP FFLHLVLII 
TCPTNPYCI CYTAHFNTY LVLIMCNSV IDPLIYAFR SLELRNTFR 
EI


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

ChainL
ProteinGamma-MSH
UniProtP01189
Sequence
>8IOC_nogp_Chain_L


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8IOCAPeptideMelanocortinMC3Homo sapiensγ-MSHCachim(NtGi1-Gs)/β1/γ22.862023-09-20doi.org/10.1038/s41421-023-00586-4
8IOC (No Gprot) APeptideMelanocortinMC3Homo sapiensγ-MSHCa2.862023-09-20doi.org/10.1038/s41421-023-00586-4
8KIGAPeptideMelanocortinMC3Homo sapiensSHU9119Ca-3.12025-02-26doi.org/10.2210/pdb8KIG/pdb
8W8WAPeptideMelanocortinMC3Homo sapiensα-MSHCaGs/β1/γ22.92025-03-19To be published
8W8W (No Gprot) APeptideMelanocortinMC3Homo sapiensα-MSHCa2.92025-03-19To be published
8W8XAPeptideMelanocortinMC3Homo sapiensβ-MSHCaGs/β1/γ22.92025-03-19To be published
8W8X (No Gprot) APeptideMelanocortinMC3Homo sapiensβ-MSHCa2.92025-03-19To be published
8W8YAPeptideMelanocortinMC3Homo sapiensγ-MSHCaGs/β1/γ22.92025-03-19To be published
8W8Y (No Gprot) APeptideMelanocortinMC3Homo sapiensγ-MSHCa2.92025-03-19To be published
9K3FAPeptideMelanocortinMC3Homo sapiens--chim(NtGi1-Gs)/β1/γ22.752025-08-06doi.org/10.1016/j.str.2025.03.004
9K3F (No Gprot) APeptideMelanocortinMC3Homo sapiens--2.752025-08-06doi.org/10.1016/j.str.2025.03.004




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8IOC_nogp.zip



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