Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:Y2 6.745410
2L:L:M4 6.774500
3L:L:F7 5.562500
4L:L:R8 7.1710
5L:L:W9 5.1610
6R:R:F45 7.9225427
7R:R:E55 4.7425407
8R:R:P72 3.965406
9R:R:Y74 6.56667658
10R:R:D84 7.486509
11R:R:L86 3.1575406
12R:R:S88 4.5475448
13R:R:E94 6.235415
14R:R:D117 8.85513
15R:R:D121 9.184514
16R:R:Y143 7.6275498
17R:R:F147 9496
18R:R:Y152 6.89568
19R:R:F179 3.94667603
20R:R:F196 9.584577
21R:R:Y207 5.328509
22R:R:F211 3.248506
23R:R:I244 2.76507
24R:R:F251 6.06578
25R:R:W255 7.97667608
26R:R:F258 5.188505
27R:R:H261 7.3225435
28R:R:L262 4.5175415
29R:R:C268 3.01254104
30R:R:N271 2.34754104
31R:R:F281 8.5575433
32R:R:M289 4.125406
33R:R:Y299 4.28167689
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:M4 R:R:M97 15.30245.78YesNo004
2L:L:M4 R:R:D117 10.632212.48YesYes003
3L:L:F7 R:R:D121 43.00654.78YesYes004
4L:L:F7 R:R:F258 61.36595.36YesYes005
5R:R:F258 R:R:F281 15.56595.36YesYes053
6L:L:R8 L:L:W9 16.80414YesYes100
7L:L:F7 L:L:W9 22.36554.01YesYes000
8L:L:W9 R:R:L192 24.37933.42YesNo004
9L:L:W9 R:R:L262 21.17443.42YesYes105
10R:R:F258 R:R:L262 30.93046.09YesYes055
11R:R:F281 R:R:H261 13.4311.31YesYes335
12R:R:I193 R:R:L262 10.3434.28NoYes045
13R:R:F258 R:R:I288 55.64393.77YesNo056
14R:R:I288 R:R:W255 55.70388.22NoYes068
15R:R:D84 R:R:N56 13.10876.73YesNo099
16R:R:F258 R:R:F259 42.48385.36YesNo056
17R:R:F196 R:R:F259 42.477326.79YesNo076
18R:R:F196 R:R:F251 42.10463.22YesYes778
19R:R:F251 R:R:L135 90.05123.65YesNo088
20R:R:L135 R:R:Y299 1004.69NoYes089
21R:R:L77 R:R:Y299 20.30682.34NoYes089
22R:R:L77 R:R:Y74 19.3322.34NoYes088
23R:R:H70 R:R:Y74 12.388910.89NoYes088
24R:R:H70 R:R:N66 10.36658.93NoNo087
25R:R:F251 R:R:W255 49.19996.01YesYes088
26R:R:R142 R:R:Y299 42.99153.09NoYes899
27R:R:R142 R:R:Y207 42.48388.23NoYes099
28R:R:M210 R:R:Y207 56.1284.79NoYes099
29R:R:M210 R:R:Y143 54.47424.79NoYes098
30R:R:F147 R:R:Y143 49.566213.41YesYes968
31R:R:F147 R:R:I146 42.96155.02YesNo069
32R:R:I146 R:R:T145 41.28413.04NoNo098
33R:R:T145 R:R:Y152 39.60248.74NoYes088
34R:R:M156 R:R:Y152 15.49738.38NoYes688
35R:R:M156 R:R:P72 13.88425.03NoYes086
36R:R:L247 R:R:Y299 42.98944.69NoYes089
37R:R:L247 R:R:Y207 42.26535.86NoYes089
38R:R:D141 R:R:Y152 12.21115.75NoYes698
39R:R:D141 R:R:F76 10.58937.17NoNo097
40R:R:L135 R:R:L80 12.83875.54NoNo089
41R:R:D84 R:R:L80 12.33758.14YesNo099
42R:R:I132 R:R:W255 13.511410.57NoYes078
43R:R:I132 R:R:M199 12.83875.83NoNo077
44R:R:C133 R:R:M199 10.10523.24NoNo057
45R:R:M116 R:R:M97 20.07972.89NoNo054
46R:R:F112 R:R:M116 17.678211.2NoNo015
47L:L:Y2 R:R:D110 13.04011.15YesNo006
48R:R:F179 R:R:L192 22.82184.87YesNo034
49R:R:F179 R:R:V188 11.51486.55YesNo035
50R:R:I244 R:R:Y207 27.96762.42YesYes079
51R:R:F211 R:R:I244 15.86152.51YesYes067
52R:R:H261 R:R:T278 11.06496.85YesNo353
53R:R:D121 R:R:E94 18.56516.5YesYes145
54R:R:D117 R:R:D121 15.0417.98YesYes134
55L:L:R8 L:L:Y2 14.29983.09YesYes100
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
I:I:?1 R:R:E94 4.87 1 No Yes 0 5 2 1
I:I:?1 R:R:D117 7.49 1 No Yes 0 3 2 1
I:I:?1 R:R:D121 9.98 1 No Yes 0 4 2 1
L:L:Y2 R:R:Q114 12.4 1 Yes No 0 5 0 1
L:L:Y2 R:R:D117 10.34 1 Yes Yes 0 3 0 1
L:L:M4 R:R:E94 5.41 0 Yes Yes 0 5 0 1
L:L:M4 R:R:M97 5.78 0 Yes No 0 4 0 1
L:L:M4 R:R:I98 5.83 0 Yes No 0 4 0 1
L:L:M4 R:R:I113 4.37 0 Yes No 0 8 0 1
L:L:M4 R:R:D117 12.48 0 Yes Yes 0 3 0 1
L:L:H6 R:R:F45 11.31 2 No Yes 0 7 0 1
L:L:H6 R:R:T95 5.48 2 No No 0 5 0 1
L:L:H6 R:R:N282 8.93 2 No No 0 3 0 1
L:L:F7 R:R:D121 4.78 0 Yes Yes 0 4 0 1
L:L:F7 R:R:I124 8.79 0 Yes No 0 4 0 1
L:L:F7 R:R:F258 5.36 0 Yes Yes 0 5 0 1
L:L:F7 R:R:L285 4.87 0 Yes No 0 3 0 1
L:L:R8 R:R:D117 5.96 1 Yes Yes 0 3 0 1
L:L:R8 R:R:N118 8.44 1 Yes No 0 4 0 1
L:L:R8 R:R:D121 16.68 1 Yes Yes 0 4 0 1
L:L:R8 R:R:I180 6.26 1 Yes No 0 5 0 1
L:L:R8 R:R:S183 5.27 1 Yes No 0 5 0 1
L:L:W9 R:R:S183 9.88 1 Yes No 0 5 0 1
L:L:W9 R:R:I189 5.87 1 Yes No 0 6 0 1
L:L:W9 R:R:L192 3.42 1 Yes No 0 4 0 1
L:L:W9 R:R:L262 3.42 1 Yes Yes 0 5 0 1
L:L:G10 R:R:H261 3.18 3 No Yes 0 5 0 1
L:L:G10 R:R:F281 9.03 3 No Yes 0 3 0 1
L:L:P12 R:R:P269 3.9 0 No No 0 2 0 1
R:R:F45 R:R:I40 5.02 2 Yes No 7 5 1 2
R:R:F45 R:R:T95 10.38 2 Yes No 7 5 1 1
R:R:F45 R:R:M289 4.98 2 Yes Yes 7 6 1 2
R:R:I124 R:R:N91 7.08 0 No No 4 6 1 2
R:R:M289 R:R:N91 4.21 0 Yes No 6 6 2 2
R:R:E94 R:R:F120 8.16 1 Yes No 5 5 1 2
R:R:D121 R:R:E94 6.5 1 Yes Yes 4 5 1 1
R:R:F120 R:R:M97 3.73 0 No No 5 4 2 1
R:R:D110 R:R:E109 14.29 0 No No 6 3 1 2
R:R:D117 R:R:D121 7.98 1 Yes Yes 3 4 1 1
R:R:I180 R:R:S122 4.64 0 No No 5 4 1 2
R:R:F179 R:R:L192 4.87 0 Yes No 3 4 2 1
R:R:I189 R:R:L262 4.28 1 No Yes 6 5 1 1
R:R:I189 R:R:I266 5.89 1 No No 6 3 1 2
R:R:I193 R:R:L262 4.28 0 No Yes 4 5 2 1
R:R:F258 R:R:F259 5.36 0 Yes No 5 6 1 2
R:R:F258 R:R:L262 6.09 0 Yes Yes 5 5 1 1
R:R:F258 R:R:F281 5.36 0 Yes Yes 5 3 1 1
R:R:F258 R:R:I288 3.77 0 Yes No 5 6 1 2
R:R:H261 R:R:I265 7.95 3 Yes No 5 3 1 2
R:R:H261 R:R:T278 6.85 3 Yes No 5 3 1 2
R:R:F281 R:R:H261 11.31 3 Yes Yes 3 5 1 1
R:R:I265 R:R:T278 3.04 3 No No 3 3 2 2
R:R:F281 R:R:L285 8.53 3 Yes No 3 3 1 1
L:L:S1 R:R:D110 2.94 0 No No 0 6 0 1
R:R:M116 R:R:M97 2.89 0 No No 5 4 2 1
R:R:C268 R:R:P269 1.88 10 Yes No 4 2 2 1
R:R:P42 R:R:T95 1.75 0 No No 4 5 2 1
L:L:Y2 R:R:D110 1.15 1 Yes No 0 6 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8W8W_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.04
Number of Linked Nodes 246
Number of Links 267
Number of Hubs 33
Number of Links mediated by Hubs 133
Number of Communities 10
Number of Nodes involved in Communities 42
Number of Links involved in Communities 49
Path Summary
Number Of Nodes in MetaPath 56
Number Of Links MetaPath 55
Number of Shortest Paths 71137
Length Of Smallest Path 3
Average Path Length 15.3629
Length of Longest Path 30
Minimum Path Strength 1.43
Average Path Strength 5.83912
Maximum Path Strength 17.75
Minimum Path Correlation 0.7
Average Path Correlation 0.926558
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.54545
Average % Of Corr. Nodes 40.4015
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 48.4698
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeCA
PDB ResiduesI:I:?1
Environment DetailsOpen EMBL-EBI Page
CodeCA
NameCALCIUM ION
Synonyms
Identifier
FormulaCa
Molecular Weight40.078
SMILES
PubChem
Formal Charge2
Total Atoms1
Total Chiral Atoms0
Total Bonds0
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP41968
Sequence
>8W8W_nogp_Chain_R
VFIKPEVFL SLGIVSLLE NILVILAVV RNGNLHSPM YFFLCSLAV 
ADMLVSVSN ALETIMIAI VHSDYLTFE DQFIQHMDN IFDSMICIS 
LVASICNLL AIAVDRYVT IFYALRYHS IMTVRKALT LIVAIWVCC 
GVCGVVFIV YSESKMVIV CLITMFFAM MLLMGTLYV HMFLFARLH 
VKRIAALMK GAVTITILL GVFIFCWAP FFLHLVLII TCPTNPYCI 
CYTAHFNTY LVLIMCNSV IDPLIYAFR SLELRNTF


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8IOCAPeptideMelanocortinMC3Homo sapiensγ-MSHCachim(NtGi1-Gs)/β1/γ22.862023-09-20doi.org/10.1038/s41421-023-00586-4
8IOC (No Gprot) APeptideMelanocortinMC3Homo sapiensγ-MSHCa2.862023-09-20doi.org/10.1038/s41421-023-00586-4
8KIGAPeptideMelanocortinMC3Homo sapiensSHU9119Ca-3.12025-02-26doi.org/10.2210/pdb8KIG/pdb
8W8WAPeptideMelanocortinMC3Homo sapiensα-MSHCaGs/β1/γ22.92025-03-19To be published
8W8W (No Gprot) APeptideMelanocortinMC3Homo sapiensα-MSHCa2.92025-03-19To be published
8W8XAPeptideMelanocortinMC3Homo sapiensβ-MSHCaGs/β1/γ22.92025-03-19To be published
8W8X (No Gprot) APeptideMelanocortinMC3Homo sapiensβ-MSHCa2.92025-03-19To be published
8W8YAPeptideMelanocortinMC3Homo sapiensγ-MSHCaGs/β1/γ22.92025-03-19To be published
8W8Y (No Gprot) APeptideMelanocortinMC3Homo sapiensγ-MSHCa2.92025-03-19To be published
9K3FAPeptideMelanocortinMC3Homo sapiens--chim(NtGi1-Gs)/β1/γ22.752025-08-06doi.org/10.1016/j.str.2025.03.004
9K3F (No Gprot) APeptideMelanocortinMC3Homo sapiens--2.752025-08-06doi.org/10.1016/j.str.2025.03.004




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8W8W_nogp.zip



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