Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 7.7651010
2L:L:S2 6.99410
3R:R:Y61 6.424508
4R:R:F65 3.66407
5R:R:I82 4.845405
6R:R:I89 5.4675427
7R:R:Q90 8.325407
8R:R:Y92 6.975407
9R:R:L93 3.815428
10R:R:D100 6.496509
11R:R:R110 10.2975407
12R:R:Y113 7.4575405
13R:R:H114 6.882505
14R:R:W120 8.87639
15R:R:L122 5.905407
16R:R:F134 6.41517
17R:R:Y135 7.762515
18R:R:Y153 6.8675407
19R:R:F186 4.762507
20R:R:F205 6.3225434
21R:R:Y207 5.844513
22R:R:R208 7.07405
23R:R:K210 9.42403
24R:R:E216 8.6403
25R:R:W228 4.4075405
26R:R:F231 5.932577
27R:R:Y238 8.144568
28R:R:F275 8.505409
29R:R:F279 8.59558
30R:R:Y282 8.874516
31R:R:F285 8.32405
32R:R:R286 8.78333616
33R:R:Y289 9.57333614
34R:R:V305 6.4325404
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:N220 10.215311.48YesNo004
2R:R:N220 R:R:R286 10.366210.85NoYes046
3L:L:?1 R:R:R208 34.65249.24YesYes005
4R:R:H206 R:R:R208 23.43517.9NoYes055
5R:R:H206 R:R:M203 22.37569.19NoNo054
6R:R:M203 R:R:Y113 18.8714.79NoYes045
7L:L:?1 R:R:Y135 21.80338.91YesYes105
8R:R:F134 R:R:Y135 22.02639.28YesYes175
9R:R:F134 R:R:S317 43.93133.96YesNo077
10R:R:S317 R:R:Y61 42.94245.09NoYes078
11R:R:R110 R:R:Y61 21.878712.35YesYes078
12R:R:L107 R:R:Y61 18.17734.69NoYes078
13R:R:F65 R:R:L107 10.99433.65YesNo077
14R:R:F134 R:R:L103 12.06197.31YesNo077
15R:R:L103 R:R:S320 11.92587.51NoNo078
16R:R:D100 R:R:S320 11.84878.83YesNo098
17L:L:?1 L:L:S2 11.463312.56YesYes100
18L:L:S2 R:R:R286 10.42523.95YesYes106
19R:R:R286 R:R:V224 26.78063.92YesNo064
20R:R:F287 R:R:V224 26.43785.24NoNo064
21R:R:F287 R:R:W228 25.65394.01NoYes065
22R:R:F231 R:R:W228 61.72824.01YesYes075
23R:R:F231 R:R:F275 58.18596.43YesYes079
24R:R:F275 R:R:I234 1008.79YesNo098
25R:R:I234 R:R:S149 98.34367.74NoNo089
26R:R:S149 R:R:Y238 70.142812.72NoYes698
27R:R:R152 R:R:Y238 63.14848.23NoYes098
28R:R:I89 R:R:R152 25.80156.26YesNo079
29R:R:I89 R:R:L93 20.78982.85YesYes278
30R:R:L93 R:R:Y327 14.23654.69YesNo289
31R:R:S331 R:R:Y327 12.4910.17NoNo089
32R:R:I334 R:R:S331 10.31044.64NoNo088
33R:R:Y135 R:R:Y282 35.13295.96YesYes156
34R:R:H283 R:R:Y282 52.047510.89NoYes086
35R:R:F227 R:R:H283 72.148537.33NoNo088
36R:R:F227 R:R:W228 37.08947.02NoYes085
37L:L:?1 R:R:L223 19.54028.42YesNo005
38R:R:L223 R:R:Y139 20.23064.69NoNo057
39R:R:H283 R:R:Y139 20.648811.98NoNo087
40R:R:F227 R:R:I142 35.35926.28NoNo088
41R:R:F279 R:R:I142 35.11658.79YesNo088
42R:R:F275 R:R:F279 44.433113.93YesYes098
43R:R:I148 R:R:R152 36.61547.52NoNo099
44R:R:I148 R:R:L93 21.14242.85NoYes098
45R:R:F79 R:R:L93 25.31614.87NoYes268
46R:R:F79 R:R:Q90 23.61385.86NoYes067
47R:R:H83 R:R:Q90 10.60412.36NoYes057
48R:R:I148 R:R:Y92 15.61084.84NoYes097
49R:R:C175 R:R:Y92 10.10874.03NoYes067
50R:R:D100 R:R:D323 11.27476.65YesNo099
51R:R:W120 R:R:Y113 15.77155.79YesYes095
52R:R:K128 R:R:R208 12.33746.19NoYes085
53L:L:?1 R:R:T132 15.07955.6YesNo105
54R:R:F186 R:R:T132 13.98726.49YesNo075
55R:R:S149 R:R:S237 27.36614.89NoNo696
56R:R:S237 R:R:Y153 29.5573.82NoYes067
57R:R:N157 R:R:Y153 17.865810.47NoYes077
58R:R:N157 R:R:N244 16.752213.62NoNo075
59R:R:V271 R:R:Y238 10.174310.09NoYes078
60R:R:I248 R:R:N244 13.56914.25NoNo065
61R:R:D323 R:R:N319 11.228810.77NoNo099
62R:R:F279 R:R:N319 11.302612.08YesNo589
63R:R:L313 R:R:Y282 16.88187.03NoYes156
64R:R:F134 R:R:L313 16.57677.31YesNo175
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:T132 5.6 1 Yes No 0 5 0 1
L:L:?1 R:R:Y135 8.91 1 Yes Yes 0 5 0 1
L:L:?1 R:R:L181 4.21 1 Yes No 0 4 0 1
L:L:?1 R:R:M189 6.45 1 Yes No 0 4 0 1
L:L:?1 R:R:R208 9.24 1 Yes Yes 0 5 0 1
L:L:?1 R:R:N220 11.48 1 Yes No 0 4 0 1
L:L:?1 R:R:L223 8.42 1 Yes No 0 5 0 1
L:L:?1 R:R:M226 7.52 1 Yes No 0 5 0 1
L:L:S2 R:R:Y135 7.63 1 Yes Yes 0 5 0 1
L:L:S2 R:R:R286 3.95 1 Yes Yes 0 6 0 1
L:L:S2 R:R:Y289 3.82 1 Yes Yes 0 4 0 1
R:R:K128 R:R:R208 6.19 4 No Yes 8 5 2 1
R:R:F186 R:R:T132 6.49 0 Yes No 7 5 2 1
R:R:M189 R:R:T132 7.53 1 No No 4 5 1 1
R:R:F134 R:R:Y135 9.28 1 Yes Yes 7 5 2 1
R:R:F134 R:R:L313 7.31 1 Yes No 7 5 2 2
R:R:Y135 R:R:Y282 5.96 1 Yes Yes 5 6 1 2
R:R:L313 R:R:Y135 7.03 1 No Yes 5 5 2 1
R:R:L223 R:R:Y139 4.69 0 No No 5 7 1 2
R:R:I143 R:R:M226 4.37 0 No No 5 5 2 1
R:R:E216 R:R:M189 9.47 0 Yes No 3 4 2 1
R:R:H206 R:R:R208 7.9 0 No Yes 5 5 2 1
R:R:Y207 R:R:Y289 8.94 1 Yes Yes 3 4 2 1
R:R:Q293 R:R:Y207 4.51 1 No Yes 4 3 2 2
R:R:K210 R:R:R208 4.95 0 Yes Yes 3 5 2 1
R:R:E216 R:R:K210 14.85 0 Yes Yes 3 3 2 2
R:R:K210 R:R:Q293 16.27 0 Yes No 3 4 2 2
R:R:F219 R:R:L223 7.31 0 No No 5 5 2 1
R:R:N220 R:R:R286 10.85 0 No Yes 4 6 1 1
R:R:I290 R:R:N220 5.66 0 No No 5 4 2 1
R:R:R286 R:R:V224 3.92 1 Yes No 6 4 1 2
R:R:R286 R:R:Y282 12.35 1 Yes Yes 6 6 1 2
R:R:N309 R:R:Y282 8.14 1 No Yes 5 6 2 2
R:R:L313 R:R:Y282 7.03 1 No Yes 5 6 2 2
R:R:R286 R:R:Y289 14.4 1 Yes Yes 6 4 1 1
R:R:N309 R:R:R286 7.23 1 No Yes 5 6 2 1
R:R:Q293 R:R:Y289 11.27 1 No Yes 4 4 2 1
R:R:V305 R:R:Y289 5.05 0 Yes Yes 4 4 2 1
R:R:N309 R:R:Y289 13.96 1 No Yes 5 4 2 1
L:L:?1 R:R:I222 3.26 1 Yes No 0 5 0 1
R:R:I218 R:R:I222 1.47 0 No No 5 5 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8IZ4_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.82
Number of Linked Nodes 263
Number of Links 289
Number of Hubs 34
Number of Links mediated by Hubs 134
Number of Communities 7
Number of Nodes involved in Communities 36
Number of Links involved in Communities 47
Path Summary
Number Of Nodes in MetaPath 65
Number Of Links MetaPath 64
Number of Shortest Paths 87363
Length Of Smallest Path 3
Average Path Length 16.9152
Length of Longest Path 29
Minimum Path Strength 1.39
Average Path Strength 7.93213
Maximum Path Strength 24.655
Minimum Path Correlation 0.7
Average Path Correlation 0.928284
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.16667
Average % Of Corr. Nodes 39.0801
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 41.0274
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeTJR
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeTJR
Name[(2~{R})-2-oxidanyl-3-phosphonooxy-propyl] octadecanoate
Synonyms
Identifier
FormulaC21 H43 O7 P
Molecular Weight438.536
SMILES
PubChem9547179
Formal Charge0
Total Atoms72
Total Chiral Atoms1
Total Bonds71
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ9UPC5
Sequence
>8IZ4_nogp_Chain_R
KLLSTVLTT SYSVIFIVG LVGNIIALY VFLGIHRKR NSIQIYLLN 
VAIADLLLI FCLPFRIMY HINQNKWTL GVILCKVVG TLFYMNMYI 
SIILLGFIS LDRYIKINT TKQSIYVCC IVWMLALGG FLTMIILTL 
KKGGHNSTM CFHYRDKHN AKGEAIFNF ILVVMFWLI FLLIILSYI 
KIGKNLLRI SKRRSKFPN SGKYATTAR NSFIVLIIF TICFVPYHA 
FRFIYISSQ LNVSSCYWK EIVHKTNEI MLVLSSFNS CLDPVMYFL 
MSSNIRKIM CQ


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8SAIAOrphanOrphanGPR34Homo sapiensLysophosphatidylserine (S12)-Gi1/β1/γ23.272023-10-04doi.org/10.1073/pnas.2308435120
8SAI (No Gprot) AOrphanOrphanGPR34Homo sapiensLysophosphatidylserine (S12)-3.272023-10-04doi.org/10.1073/pnas.2308435120
8K4NAOrphanOrphanGPR34Homo sapiensPubChem 168719765-Gi1/β1/γ22.832023-10-25To be published
8K4N (No Gprot) AOrphanOrphanGPR34Homo sapiensPubChem 168719765-2.832023-10-25To be published
8WRBAOrphanOrphanGPR34Homo sapiensLysophosphatidylserine (UBL)-Gi1/β1/γ22.912023-11-08doi.org/10.1371/journal.pbio.3002387
8WRB (No Gprot) AOrphanOrphanGPR34Homo sapiensLysophosphatidylserine (UBL)-2.912023-11-08doi.org/10.1371/journal.pbio.3002387
8XBEAOrphanOrphanGPR34Homo sapiensS3E-Lysophosphatidylserine-Gi1/β1/γ13.42024-05-15doi.org/10.1038/s41467-024-45046-z
8XBE (No Gprot) AOrphanOrphanGPR34Homo sapiensS3E-Lysophosphatidylserine-3.42024-05-15doi.org/10.1038/s41467-024-45046-z
8XBGAOrphanOrphanGPR34Homo sapiensS3E-Lysophosphatidylserine--3.432024-05-15doi.org/10.1038/s41467-024-45046-z
8XBHAOrphanOrphanGPR34Homo sapiensPubChem 162656636-Gi1/β1/γ22.832023-12-27doi.org/10.1038/s41467-024-45046-z
8XBH (No Gprot) AOrphanOrphanGPR34Homo sapiensPubChem 162656636-2.832023-12-27doi.org/10.1038/s41467-024-45046-z
8XBIAOrphanOrphanGPR34Homo sapiensPubChem 162656636--3.062023-12-27doi.org/10.1038/s41467-024-45046-z
8IYXAOrphanOrphanGPR34Homo sapiensYL-365--3.342024-03-20doi.org/10.1073/pnas.2308435120
8IZ4AOrphanOrphanGPR34Homo sapiensLysophosphatidylserine (TJR)-Gi1/β1/γ22.942024-04-10To be published
8IZ4 (No Gprot) AOrphanOrphanGPR34Homo sapiensLysophosphatidylserine (TJR)-2.942024-04-10To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8IZ4_nogp.zip



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