Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 7.3951410
2R:R:L57 4.14525
3R:R:Y61 5.268508
4R:R:Y92 7.358547
5R:R:D100 6.26509
6R:R:H114 5.77833625
7R:R:W120 4.696559
8R:R:L122 3.3407
9R:R:L133 4.4975415
10R:R:Y135 9.514515
11R:R:M136 4.82515
12R:R:Y139 8.72407
13R:R:I140 4.41407
14R:R:I142 6.0375418
15R:R:D151 5.755408
16R:R:Y153 6.138507
17R:R:F186 5.0075407
18R:R:L194 3.9025404
19R:R:F205 12.705404
20R:R:E216 1.85403
21R:R:F227 14.1225418
22R:R:I230 2.935419
23R:R:I234 6.2125408
24R:R:Y238 6.892508
25R:R:I241 4.055468
26R:R:L272 4.025407
27R:R:F275 7.62409
28R:R:F279 8.874518
29R:R:Y282 8.43616
30R:R:H283 13.28518
31R:R:R286 8.31571716
32R:R:Y289 8.88614
33R:R:K302 6.23404
34R:R:N309 9.145415
35R:R:L313 5.475415
36R:R:P324 4.6625409
37R:R:F328 3.2725406
38R:R:I334 3.645488
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:Y289 11.75325.89YesYes104
2R:R:Y207 R:R:Y289 14.28317.94NoYes134
3R:R:K302 R:R:Y207 13.095614.33YesNo043
4L:L:?1 R:R:Y135 31.486920.28YesYes105
5R:R:L313 R:R:Y135 30.90065.86YesYes155
6R:R:L313 R:R:Y61 1003.52YesYes058
7R:R:L57 R:R:Y61 40.06494.69YesYes058
8R:R:H114 R:R:L57 23.76095.14YesYes255
9R:R:H114 R:R:N118 16.86465.1YesNo054
10R:R:E50 R:R:N118 12.11465.26NoNo044
11L:L:?1 R:R:N309 17.76817.66YesYes105
12R:R:L313 R:R:N309 26.5125.49YesYes155
13R:R:R110 R:R:Y61 51.48629.26NoYes078
14R:R:H114 R:R:R110 23.30364.51YesNo057
15R:R:L57 R:R:V56 13.50491.49YesNo055
16R:R:L53 R:R:V56 11.02671.49NoNo055
17R:R:E303 R:R:M48 10.7394.06NoNo012
18R:R:S317 R:R:Y61 11.26643.82NoYes078
19R:R:F134 R:R:Y135 26.921411.35NoYes075
20R:R:F134 R:R:L103 25.89987.31NoNo077
21R:R:L103 R:R:L107 14.27574.15NoNo077
22R:R:F65 R:R:L107 13.01453.65NoNo077
23R:R:L103 R:R:S320 21.96124.5NoNo078
24R:R:D100 R:R:S320 21.673611.78YesNo098
25R:R:D100 R:R:N72 21.62566.73YesNo099
26R:R:N72 R:R:P324 20.4756.52NoYes099
27R:R:F328 R:R:P324 14.60024.33YesYes069
28L:L:?1 R:R:L223 28.9948.5YesNo105
29R:R:L223 R:R:Y139 29.200519.93NoYes057
30R:R:I142 R:R:Y139 31.48333.63YesYes087
31R:R:I142 R:R:I230 34.20122.94YesYes189
32R:R:I230 R:R:I234 30.38432.94YesYes098
33R:R:I234 R:R:S149 86.078310.84YesNo089
34R:R:S149 R:R:Y238 67.51735.09NoYes098
35R:R:R152 R:R:Y238 47.70628.23NoYes098
36R:R:I148 R:R:R152 26.01797.52NoNo099
37R:R:I148 R:R:Y92 16.27824.84NoYes097
38R:R:S171 R:R:Y92 11.86757.63NoYes077
39R:R:I91 R:R:S171 10.57314.64NoNo067
40R:R:I89 R:R:R152 20.96185.01NoNo079
41R:R:I89 R:R:K155 13.13255.82NoNo078
42R:R:K155 R:R:N87 11.83434.2NoNo088
43L:L:?1 R:R:M136 20.55617.1YesYes105
44R:R:I140 R:R:M136 11.69052.92YesYes075
45R:R:D100 R:R:D323 15.27513.99YesNo099
46R:R:S316 R:R:Y282 51.31665.09NoYes076
47R:R:F279 R:R:S316 50.89985.28YesNo087
48R:R:R286 R:R:Y282 14.869412.35YesYes166
49R:R:F205 R:R:R110 27.854428.86YesNo047
50R:R:H114 R:R:Y113 24.188710.89YesNo055
51R:R:F205 R:R:Y113 11.8978.25YesNo045
52R:R:W120 R:R:Y113 31.96273.86YesNo095
53R:R:C204 R:R:F205 12.93339.78NoYes094
54R:R:C204 R:R:W120 10.53625.22NoYes599
55R:R:L122 R:R:W120 32.93635.69YesYes079
56R:R:L122 R:R:T121 18.86344.42YesNo073
57R:R:N116 R:R:T121 14.15771.46NoNo033
58L:L:?1 R:R:T132 29.93444.94YesNo005
59R:R:F186 R:R:T132 28.39656.49YesNo075
60R:R:F186 R:R:I190 26.10275.02YesNo075
61R:R:I190 R:R:L194 22.93112.85NoYes054
62R:R:K128 R:R:L194 16.49952.82NoYes084
63R:R:K128 R:R:T193 11.59836.01NoNo085
64R:R:H283 R:R:Y282 11.804814.16YesYes186
65R:R:F275 R:R:F279 50.881412.86YesYes098
66R:R:F275 R:R:L145 14.31263.65YesNo098
67R:R:S149 R:R:S237 25.88146.52NoNo096
68R:R:S237 R:R:Y153 24.77873.82NoYes067
69R:R:N157 R:R:Y153 23.049111.63NoYes077
70R:R:S268 R:R:Y238 14.58926.36NoYes078
71R:R:N157 R:R:N244 21.647713.62NoNo075
72L:L:?1 R:R:R208 14.56718.98YesNo005
73R:R:H283 R:R:V224 11.04154.15YesNo084
74R:R:V271 R:R:Y238 10.709510.09NoYes078
75R:R:I248 R:R:N244 17.49155.66NoNo065
76R:R:I248 R:R:Y261 16.06433.63NoNo066
77R:R:V305 R:R:Y289 11.35493.79NoYes044
78R:R:R286 R:R:Y289 10.49210.29YesYes164
79R:R:F275 R:R:I234 57.97687.54YesYes098
80R:R:L313 R:R:Y282 44.39817.03YesYes156
81R:R:D323 R:R:L145 13.0556.79NoNo098
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:T132 4.94 1 Yes No 0 5 0 1
L:L:?1 R:R:Y135 20.28 1 Yes Yes 0 5 0 1
L:L:?1 R:R:M136 7.1 1 Yes Yes 0 5 0 1
L:L:?1 R:R:M189 4.73 1 Yes No 0 4 0 1
L:L:?1 R:R:R208 18.98 1 Yes No 0 5 0 1
L:L:?1 R:R:F219 7.48 1 Yes No 0 5 0 1
L:L:?1 R:R:N220 6.13 1 Yes No 0 4 0 1
L:L:?1 R:R:L223 8.5 1 Yes No 0 5 0 1
L:L:?1 R:R:R286 4.75 1 Yes Yes 0 6 0 1
L:L:?1 R:R:Y289 5.89 1 Yes Yes 0 4 0 1
L:L:?1 R:R:N309 7.66 1 Yes Yes 0 5 0 1
R:R:F186 R:R:T132 6.49 0 Yes No 7 5 2 1
R:R:L133 R:R:M136 4.24 1 Yes Yes 5 5 2 1
R:R:L133 R:R:N137 4.12 1 Yes No 5 8 2 2
R:R:F186 R:R:L133 4.87 0 Yes Yes 7 5 2 2
R:R:F134 R:R:Y135 11.35 0 No Yes 7 5 2 1
R:R:Y135 R:R:Y282 5.96 1 Yes Yes 5 6 1 2
R:R:R286 R:R:Y135 4.12 1 Yes Yes 6 5 1 1
R:R:L313 R:R:Y135 5.86 1 Yes Yes 5 5 2 1
R:R:M136 R:R:N137 7.01 1 Yes No 5 8 1 2
R:R:L223 R:R:Y139 19.93 1 No Yes 5 7 1 2
R:R:F219 R:R:M189 8.71 1 No No 5 4 1 1
R:R:H206 R:R:R208 7.9 0 No No 5 5 2 1
R:R:Y207 R:R:Y289 7.94 1 No Yes 3 4 2 1
R:R:Q293 R:R:Y207 9.02 1 No No 4 3 2 2
R:R:K210 R:R:R208 4.95 0 No No 3 5 2 1
R:R:K210 R:R:Q293 13.56 0 No No 3 4 2 2
R:R:F219 R:R:L223 3.65 1 No No 5 5 1 1
R:R:N220 R:R:R286 16.87 1 No Yes 4 6 1 1
R:R:I290 R:R:N220 7.08 1 No No 5 4 2 1
R:R:R286 R:R:Y282 12.35 1 Yes Yes 6 6 1 2
R:R:L313 R:R:Y282 7.03 1 Yes Yes 5 6 2 2
R:R:R286 R:R:Y289 10.29 1 Yes Yes 6 4 1 1
R:R:I290 R:R:R286 5.01 1 No Yes 5 6 2 1
R:R:N309 R:R:R286 4.82 1 Yes Yes 5 6 1 1
R:R:Q293 R:R:Y289 6.76 1 No Yes 4 4 2 1
R:R:V305 R:R:Y289 3.79 0 No Yes 4 4 2 1
R:R:N309 R:R:Y289 18.61 1 Yes Yes 5 4 1 1
R:R:L313 R:R:N309 5.49 1 Yes Yes 5 5 2 1
R:R:I140 R:R:M136 2.92 0 Yes Yes 7 5 2 1
L:L:?1 R:R:G131 2.86 1 Yes No 0 6 0 1
R:R:L183 R:R:M136 2.83 0 No Yes 4 5 2 1
L:L:?1 R:R:L181 2.32 1 Yes No 0 4 0 1
R:R:G184 R:R:G185 2.11 0 No No 3 4 2 1
L:L:?1 R:R:G185 1.91 1 Yes No 0 4 0 1
R:R:G185 R:R:T188 1.82 0 No No 4 8 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8XBH_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.52
Number of Linked Nodes 286
Number of Links 316
Number of Hubs 38
Number of Links mediated by Hubs 145
Number of Communities 8
Number of Nodes involved in Communities 46
Number of Links involved in Communities 61
Path Summary
Number Of Nodes in MetaPath 82
Number Of Links MetaPath 81
Number of Shortest Paths 62466
Length Of Smallest Path 3
Average Path Length 12.8125
Length of Longest Path 27
Minimum Path Strength 1.24
Average Path Strength 6.86381
Maximum Path Strength 25.745
Minimum Path Correlation 0.7
Average Path Correlation 0.939639
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 4.7619
Average % Of Corr. Nodes 54.4669
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 47.2716
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeKW3
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeKW3
Name(2~{S})-2-azanyl-3-[[(2~{R})-1-ethoxy-3-[3-[2-[(3-phenoxyphenyl)methoxy]phenyl]propanoyloxy]propan-2-yl]oxy-oxidanyl-phosphoryl]oxy-propanoic acid
Synonyms
Identifier
FormulaC30 H36 N O11 P
Molecular Weight617.581
SMILES
PubChem162656636
Formal Charge0
Total Atoms79
Total Chiral Atoms2
Total Bonds81
Total Aromatic Bonds18

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ9UPC5
Sequence
>8XBH_nogp_Chain_R
TCPMDEKLL STVLTTSYS VIFIVGLVG NIIALYVFL GIHRKRNSI 
QIYLLNVAI ADLLLIFCL PFRIMYHIN QNKWTLGVI LCKVVGTLF 
YMNMYISII LLGFISLDR YIKINRSIQ QRKAITTKQ SIYVCCIVW 
MLALGGFLT MIILTLKKG GHNSTMCFH YRDKHNAKG EAIFNFILV 
VMFWLIFLL IILSYIKIG KNLLRISKR RSKFPNSGK YATTARNSF 
IVLIIFTIC FVPYHAFRF IYISSQLNV SSCYWKEIV HKTNEIMLV 
LSSFNSCLD PVMYFLMSS NIRKIMCQL L


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8XBEAOrphanOrphanGPR34Homo sapiensS3E-LysoPS-Gi1/β1/γ13.42024-05-15doi.org/10.1038/s41467-024-45046-z
8XBE (No Gprot) AOrphanOrphanGPR34Homo sapiensS3E-LysoPS-3.42024-05-15doi.org/10.1038/s41467-024-45046-z
8XBGAOrphanOrphanGPR34Homo sapiensS3E-LysoPS--3.432024-05-15doi.org/10.1038/s41467-024-45046-z
8SAIAOrphanOrphanGPR34Homo sapiens1-Oleoyl-2-Hydroxy-Sn-Glycero-3-Phospho-L-Serine-Gi1/β1/γ23.272023-10-04doi.org/10.1073/pnas.2308435120
8SAI (No Gprot) AOrphanOrphanGPR34Homo sapiens1-Oleoyl-2-Hydroxy-Sn-Glycero-3-Phospho-L-Serine-3.272023-10-04doi.org/10.1073/pnas.2308435120
8IYXAOrphanOrphanGPR34Homo sapiensYL-365--3.342024-03-20doi.org/10.1073/pnas.2308435120
8WRBAOrphanOrphanGPR34Homo sapiensLysophosphatidylserine-Gi1/β1/γ22.912023-11-08doi.org/10.1371/journal.pbio.3002387
8WRB (No Gprot) AOrphanOrphanGPR34Homo sapiensLysophosphatidylserine-2.912023-11-08doi.org/10.1371/journal.pbio.3002387
8XBHAOrphanOrphanGPR34Homo sapiensS3E-LysoPS-Gi1/β1/γ22.832023-12-27doi.org/10.1038/s41467-024-45046-z
8XBH (No Gprot) AOrphanOrphanGPR34Homo sapiensS3E-LysoPS-2.832023-12-27doi.org/10.1038/s41467-024-45046-z
8XBIAOrphanOrphanGPR34Homo sapiensS3E-LysoPS--3.062023-12-27doi.org/10.1038/s41467-024-45046-z
8K4NAOrphanOrphanGPR34Homo sapiensVF0-Gi1/β1/γ22.832023-10-25To be published
8K4N (No Gprot) AOrphanOrphanGPR34Homo sapiensVF0-2.832023-10-25To be published
8IZ4AOrphanOrphanGPR34Homo sapiensLysophosphatidylserine-Gi1/β1/γ22.942024-04-10To be published
8IZ4 (No Gprot) AOrphanOrphanGPR34Homo sapiensLysophosphatidylserine-2.942024-04-10To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8XBH_nogp.zip



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