Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:L57 3.6875405
2R:R:Y61 4.7825408
3R:R:I64 2.6825407
4R:R:Y92 5.235407
5R:R:L93 3.5225428
6R:R:R110 10.32407
7R:R:W120 7.04509
8R:R:T132 5.7825415
9R:R:I140 2.315407
10R:R:I143 3.568505
11R:R:S171 4.0425407
12R:R:F186 5.3225417
13R:R:F205 7.488554
14R:R:Y207 6.676513
15R:R:F227 11.8875438
16R:R:F231 6.7925407
17R:R:I234 4.8825408
18R:R:Y238 5.786508
19R:R:R247 4.545405
20R:R:T264 4.19407
21R:R:L272 4.28407
22R:R:F275 5.53539
23R:R:F279 9.75438
24R:R:Y282 6.93716
25R:R:R286 5.47857716
26R:R:Y289 9.938514
27R:R:W301 3.55411
28R:R:K302 5.62414
29R:R:N309 7.8375415
30R:R:Y327 4.9375429
31R:R:F328 2.6225406
32R:R:I334 5.17528
33L:L:?1 8.592141410
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:E303 R:R:E50 90.66826.34NoNo014
2R:R:E303 R:R:K307 89.83856.75NoNo013
3R:R:K307 R:R:L53 89.13375.64NoNo035
4R:R:L53 R:R:L57 88.64312.77NoYes055
5R:R:L57 R:R:V56 16.76331.49YesNo055
6R:R:T59 R:R:V56 13.44463.17NoNo055
7R:R:H114 R:R:L57 61.31683.86NoYes055
8R:R:E310 R:R:L57 26.72856.63NoYes055
9R:R:H114 R:R:R110 35.97114.51NoYes057
10R:R:R110 R:R:Y61 68.11498.23YesYes078
11R:R:L107 R:R:Y61 33.50884.69NoYes078
12R:R:L107 R:R:S317 32.85753NoNo077
13R:R:I64 R:R:S317 33.25013.1YesNo077
14R:R:E310 R:R:R110 25.88999.3NoYes057
15R:R:V314 R:R:Y61 33.77643.79NoYes058
16R:R:S60 R:R:V314 33.12523.23NoNo055
17R:R:I64 R:R:S60 33.24113.1YesNo075
18R:R:I111 R:R:Y61 10.5542.42NoYes078
19R:R:C321 R:R:I64 34.53473.27NoYes077
20R:R:C321 R:R:G68 26.00591.96NoNo078
21R:R:G68 R:R:I104 21.71471.76NoNo085
22R:R:F65 R:R:I104 17.40572.51NoNo075
23R:R:E50 R:R:H306 92.394.92NoNo044
24R:R:H306 R:R:Y207 93.16627.62NoYes043
25R:R:Y207 R:R:Y289 93.55876.95YesYes134
26R:R:R286 R:R:Y289 30.23465.14YesYes164
27R:R:R286 R:R:Y282 37.15769.26YesYes166
28R:R:H283 R:R:Y282 27.21925.44NoYes086
29R:R:F227 R:R:H283 28.405730.55YesNo088
30R:R:F227 R:R:F275 18.19974.29YesYes389
31R:R:F275 R:R:L145 28.65552.44YesNo098
32R:R:D323 R:R:L145 25.5425.43NoNo098
33R:R:D323 R:R:P324 19.26133.22NoNo099
34R:R:N72 R:R:P324 16.09424.89NoNo099
35L:L:?1 R:R:Y289 77.937412.37YesYes104
36L:L:?1 R:R:I143 1003.76YesYes005
37R:R:I143 R:R:I230 57.36462.94YesNo059
38R:R:I230 R:R:I234 56.27622.94NoYes098
39R:R:F275 R:R:I234 40.14633.77YesYes098
40R:R:F147 R:R:I143 50.71823.77NoYes055
41R:R:F147 R:R:Y92 49.62987.22NoYes057
42R:R:I148 R:R:Y92 43.76844.84NoYes097
43R:R:I148 R:R:L93 61.44172.85NoYes098
44R:R:F79 R:R:L93 15.6664.87NoYes268
45R:R:F79 R:R:L94 21.830710.96NoNo066
46R:R:L93 R:R:Y327 72.4153.52YesYes289
47R:R:I334 R:R:Y327 76.76877.25YesYes289
48R:R:H83 R:R:I334 14.48842.65NoYes058
49R:R:S171 R:R:Y92 23.8385.09YesYes077
50R:R:I89 R:R:L93 31.11792.85NoYes078
51R:R:I148 R:R:R152 36.33695.01NoNo099
52R:R:I89 R:R:R152 29.7355.01NoNo079
53R:R:I98 R:R:L94 14.62224.28NoNo056
54L:L:?1 R:R:M136 26.22894.97YesNo005
55R:R:I143 R:R:V178 16.5761.54YesNo057
56R:R:I140 R:R:V178 14.42591.54YesNo077
57R:R:M136 R:R:N137 15.13962.8NoNo058
58R:R:L103 R:R:N137 10.16156.87NoNo078
59R:R:F205 R:R:R110 42.028719.24YesYes047
60R:R:F205 R:R:V130 12.90933.93YesNo045
61R:R:H114 R:R:Y113 44.54469.8NoNo055
62R:R:F205 R:R:Y113 18.69033.09YesNo045
63R:R:W120 R:R:Y113 43.50083.86YesNo095
64R:R:C204 R:R:W120 11.517518.28NoYes099
65R:R:C204 R:R:F205 15.96935.59NoYes594
66R:R:G123 R:R:W120 35.93542.81NoYes079
67R:R:G123 R:R:S201 31.95653.71NoNo074
68R:R:S201 R:R:V124 27.95973.23NoNo044
69R:R:H199 R:R:V124 19.91264.15NoNo034
70L:L:?1 R:R:T132 15.35379.07YesYes105
71L:L:?1 R:R:Y135 11.285622.67YesNo105
72R:R:I234 R:R:S149 57.329.29YesNo089
73R:R:S149 R:R:S237 65.70613.26NoNo096
74R:R:S149 R:R:Y238 48.29167.63NoYes098
75R:R:S237 R:R:Y153 39.20967.63NoNo067
76R:R:N157 R:R:Y153 32.09036.98NoNo077
77R:R:I241 R:R:S237 27.4693.1NoNo086
78R:R:G197 R:R:H199 15.86233.18NoNo013
79R:R:K302 R:R:Y207 21.27755.97YesYes143
80R:R:E216 R:R:H211 13.21263.69NoNo034
81R:R:H211 R:R:Q293 21.081311.13NoNo044
82R:R:F231 R:R:F275 12.38295.36YesYes079
83R:R:M312 R:R:Y282 19.32383.59NoYes066
84R:R:M312 R:R:P281 10.07233.35NoNo069
85R:R:P281 R:R:V280 10.06333.53NoNo095
86R:R:F231 R:R:V280 12.29375.24YesNo075
87R:R:L272 R:R:Y238 16.18347.03YesYes078
88R:R:V271 R:R:Y238 11.74953.79NoYes078
89R:R:G242 R:R:I241 22.73173.53NoNo048
90R:R:N157 R:R:N244 29.65478.17NoNo075
91R:R:N244 R:R:R247 27.45126.03NoYes055
92R:R:G242 R:R:T264 17.75361.82NoYes047
93R:R:L245 R:R:T264 10.15268.84NoYes087
94R:R:I248 R:R:R247 20.05538.77NoYes065
95R:R:I248 R:R:R252 17.55733.76NoNo064
96R:R:F279 R:R:N319 13.025214.5YesNo089
97R:R:F285 R:R:M312 10.3313.73NoNo056
98R:R:K302 R:R:W301 13.47135.8YesYes141
99R:R:F318 R:R:I64 67.32981.26NoYes057
100R:R:F318 R:R:L322 67.865110.96NoNo056
101R:R:F328 R:R:I334 72.66481.26YesYes068
102R:R:L322 R:R:V325 68.74831.49NoNo066
103R:R:F328 R:R:V325 69.64945.24YesNo066
104R:R:I98 R:R:L76 10.99121.43NoNo057
105R:R:A99 R:R:I140 10.29531.62NoYes087
106R:R:T58 R:R:T59 10.10791.57NoNo055
107R:R:R152 R:R:Y238 59.73774.12NoYes098
108L:L:?1 R:R:R286 15.20215.34YesYes106
109R:R:Q293 R:R:Y289 15.255611.27NoYes144
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:K128 R:R:T193 7.51 1 No No 8 5 1 2
R:R:K128 R:R:R208 4.95 1 No No 8 5 1 1
L:L:?1 R:R:K128 4.96 1 Yes No 0 8 0 1
R:R:F186 R:R:T132 6.49 1 Yes Yes 7 5 2 1
R:R:M189 R:R:T132 3.01 1 No Yes 4 5 1 1
R:R:I190 R:R:T132 4.56 1 No Yes 5 5 2 1
L:L:?1 R:R:T132 9.07 1 Yes Yes 0 5 0 1
R:R:Y135 R:R:Y282 4.96 1 No Yes 5 6 1 2
R:R:R286 R:R:Y135 5.14 1 Yes No 6 5 1 1
L:L:?1 R:R:Y135 22.67 1 Yes No 0 5 0 1
R:R:A182 R:R:M136 3.22 0 No No 7 5 2 1
L:L:?1 R:R:M136 4.97 1 Yes No 0 5 0 1
R:R:L223 R:R:Y139 12.89 0 No No 5 7 1 2
R:R:F147 R:R:I143 3.77 0 No Yes 5 5 2 1
R:R:I143 R:R:M226 5.83 0 Yes No 5 5 1 2
R:R:I143 R:R:I230 2.94 0 Yes No 5 9 1 2
L:L:?1 R:R:I143 3.76 1 Yes Yes 0 5 0 1
L:L:?1 R:R:L181 3.65 1 Yes No 0 4 0 1
R:R:F186 R:R:I190 6.28 1 Yes No 7 5 2 2
R:R:F219 R:R:M189 3.73 1 No No 5 4 1 1
L:L:?1 R:R:M189 8.7 1 Yes No 0 4 0 1
R:R:M203 R:R:R208 4.96 0 No No 4 5 2 1
R:R:Y207 R:R:Y289 6.95 1 Yes Yes 3 4 2 1
R:R:Q293 R:R:Y207 9.02 1 No Yes 4 3 2 2
L:L:?1 R:R:R208 8.54 1 Yes No 0 5 0 1
L:L:?1 R:R:F219 9.64 1 Yes No 0 5 0 1
R:R:N220 R:R:R286 4.82 1 No Yes 4 6 1 1
R:R:I290 R:R:N220 4.25 0 No No 5 4 2 1
L:L:?1 R:R:N220 10.86 1 Yes No 0 4 0 1
L:L:?1 R:R:L223 8.52 1 Yes No 0 5 0 1
R:R:R286 R:R:Y282 9.26 1 Yes Yes 6 6 1 2
R:R:L313 R:R:Y282 11.72 0 No Yes 5 6 2 2
R:R:R286 R:R:Y289 5.14 1 Yes Yes 6 4 1 1
R:R:N309 R:R:R286 6.03 1 Yes Yes 5 6 1 1
L:L:?1 R:R:R286 5.34 1 Yes Yes 0 6 0 1
R:R:Q293 R:R:Y289 11.27 1 No Yes 4 4 2 1
R:R:N309 R:R:Y289 13.96 1 Yes Yes 5 4 1 1
L:L:?1 R:R:Y289 12.37 1 Yes Yes 0 4 0 1
R:R:L313 R:R:N309 4.12 0 No Yes 5 5 2 1
L:L:?1 R:R:N309 7.24 1 Yes Yes 0 5 0 1
R:R:M136 R:R:N137 2.8 0 No No 5 8 1 2
R:R:R286 R:R:V224 2.62 1 Yes No 6 4 1 2
R:R:I143 R:R:V178 1.54 0 Yes No 5 7 1 2
R:R:I177 R:R:L181 1.43 0 No No 3 4 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8SAI_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.85
Number of Linked Nodes 261
Number of Links 284
Number of Hubs 33
Number of Links mediated by Hubs 131
Number of Communities 5
Number of Nodes involved in Communities 36
Number of Links involved in Communities 51
Path Summary
Number Of Nodes in MetaPath 110
Number Of Links MetaPath 109
Number of Shortest Paths 41540
Length Of Smallest Path 3
Average Path Length 13.0728
Length of Longest Path 33
Minimum Path Strength 1.24
Average Path Strength 5.53659
Maximum Path Strength 18.49
Minimum Path Correlation 0.7
Average Path Correlation 0.928636
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.33333
Average % Of Corr. Nodes 47.9354
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 39.8814
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeS12
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeS12
NameO-[(S)-hydroxy{[(2S)-2-hydroxy-3-(octadec-9-enoyloxy)propyl]oxy}phosphoryl]-L-serine
Synonyms1-oleoyl-2-hydroxy-sn-glycero-3-phospho-L-serine
Identifier
FormulaC24 H46 N O9 P
Molecular Weight523.597
SMILES
PubChem137349977
Formal Charge0
Total Atoms81
Total Chiral Atoms2
Total Bonds80
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ9UPC5
Sequence
>8SAI_nogp_Chain_R
MDEKLLSTV LTTSYSVIF IVGLVGNII ALYVFLGIH RKRNSIQIY 
LLNVAIADL LLIFCLPFR IMYHINQNK WTLGVILCK VVGTLFYMN 
MYISIILLG FISLDRYIK INRSIQQRK AITTKQSIY VCCIVWMLA 
LGGFLTMII LTLKKGGHN STMCFHYRD KHNAKGEAI FNFILVVMF 
WLIFLLIIL SYIKIGKNL LRISKRRSK FPNSGKYAT TARNSFIVL 
IIFTICFVP YHAFRFIYI SSQLNVSSC YWKEIVHKT NEIMLVLSS 
FNSCLDPVM YFLMSSNIR KIM


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8XBGAOrphanOrphanGPR34Homo sapiensS3E-LysoPS--3.432024-05-1510.1038/s41467-024-45046-z
8XBEAOrphanOrphanGPR34Homo sapiensS3E-LysoPS-Gi1/β1/γ13.42024-05-1510.1038/s41467-024-45046-z
8XBE (No Gprot) AOrphanOrphanGPR34Homo sapiensS3E-LysoPS-3.42024-05-1510.1038/s41467-024-45046-z
8IZ4AOrphanOrphanGPR34Homo sapiensLysophosphatidylserine-Gi1/β1/γ22.942024-04-10To be published
8IZ4 (No Gprot) AOrphanOrphanGPR34Homo sapiensLysophosphatidylserine-2.942024-04-10To be published
8IYXAOrphanOrphanGPR34Homo sapiensYL-365--3.342024-03-2010.1073/pnas.2308435120
8XBIAOrphanOrphanGPR34Homo sapiensS3E-LysoPS--3.062023-12-27To be published
8XBHAOrphanOrphanGPR34Homo sapiensS3E-LysoPS-Gi1/β1/γ22.832023-12-27To be published
8XBH (No Gprot) AOrphanOrphanGPR34Homo sapiensS3E-LysoPS-2.832023-12-27To be published
8WRBAOrphanOrphanGPR34Homo sapiensLysophosphatidylserine-Gi1/β1/γ22.912023-11-0810.1371/journal.pbio.3002387
8WRB (No Gprot) AOrphanOrphanGPR34Homo sapiensLysophosphatidylserine-2.912023-11-0810.1371/journal.pbio.3002387
8K4NAOrphanOrphanGPR34Homo sapiensVF0-Gi1/β1/γ22.832023-10-25To be published
8K4N (No Gprot) AOrphanOrphanGPR34Homo sapiensVF0-2.832023-10-25To be published
8SAIAOrphanOrphanGPR34Homo sapiens1-Oleoyl-2-Hydroxy-Sn-Glycero-3-Phospho-L-Serine-Gi1/β1/γ23.272023-10-0410.1073/pnas.2308435120
8SAI (No Gprot) AOrphanOrphanGPR34Homo sapiens1-Oleoyl-2-Hydroxy-Sn-Glycero-3-Phospho-L-Serine-3.272023-10-0410.1073/pnas.2308435120




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8SAI_nogp.zip



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