Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:Y42 7.196557
2R:R:K64 8.264585
3R:R:Y73 7.2597
4R:R:L75 5.3025406
5R:R:N76 5.834109
6R:R:F84 9.11406
7R:R:F88 7.55407
8R:R:W99 7.533336129
9R:R:C106 4.98754129
10R:R:Y114 8.902515
11R:R:F117 8.905408
12R:R:Y118 6.16833617
13R:R:F123 6.7754108
14R:R:Y132 9.06538
15R:R:V136 8.8075437
16R:R:T165 5.1225417
17R:R:L168 8.835414
18R:R:Y172 8.158504
19R:R:Y187 9.96505
20R:R:K195 7.6475405
21R:R:N199 4.6415
22R:R:M202 4.255415
23R:R:N203 4.554136
24R:R:F214 6.65628
25R:R:C217 4.1425407
26R:R:Y218 7.07571729
27R:R:I237 3.7365147
28R:R:F250 6.72408
29R:R:W251 7.351676119
30R:R:N255 7.0675408
31R:R:F259 6.1654136
32R:R:H264 5.1825402
33R:R:F290 6.692557
34R:R:Y300 7.815629
35R:R:F302 5.436576
36R:R:F307 6.19578
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:L95 R:R:Y42 11.01113.52NoYes057
2R:R:F290 R:R:Y42 24.9919.28YesYes577
3R:R:C293 R:R:S49 11.48445.16NoNo088
4R:R:C293 R:R:F88 13.07956.98NoYes087
5R:R:F290 R:R:F88 23.514311.79YesYes077
6R:R:C106 R:R:W99 53.31625.22YesYes1299
7R:R:C106 R:R:Y172 61.5234.03YesYes094
8R:R:Y114 R:R:Y172 66.45748.94YesYes054
9R:R:Y114 R:R:Y118 31.21695.96YesYes157
10R:R:F117 R:R:Y118 64.1069.28YesYes087
11R:R:F117 R:R:F254 24.50736.43YesNo087
12R:R:F254 R:R:S289 23.31369.25NoNo078
13R:R:F290 R:R:S289 22.1253.96YesNo078
14R:R:M202 R:R:Y114 36.93853.59YesYes155
15R:R:F117 R:R:M202 58.19914.98YesYes085
16R:R:F302 R:R:V298 51.57197.87YesNo066
17R:R:I299 R:R:V298 52.87883.07NoNo086
18R:R:I299 R:R:V295 60.43223.07NoNo086
19R:R:F250 R:R:V295 61.667113.11YesNo086
20R:R:F250 R:R:W251 65.317.02YesYes089
21R:R:H292 R:R:W251 43.406212.7NoYes1199
22R:R:F84 R:R:H292 42.45437.92YesNo069
23R:R:F84 R:R:F88 23.4687.5YesYes067
24R:R:F302 R:R:V56 21.05483.93YesNo769
25R:R:F302 R:R:F307 25.24837.5YesYes768
26R:R:A78 R:R:V56 20.86443.39NoNo099
27R:R:A78 R:R:I57 19.32083.25NoNo097
28R:R:I57 R:R:L75 17.76694.28NoYes076
29R:R:F307 R:R:V59 20.47859.18YesNo087
30R:R:I314 R:R:V59 19.06354.61NoNo047
31R:R:C63 R:R:I314 17.61776.55NoNo054
32R:R:C63 R:R:K64 16.05873.23NoYes055
33R:R:I124 R:R:W251 94.77753.52NoYes089
34R:R:I124 R:R:Y300 49.34917.25NoYes089
35R:R:M127 R:R:Y300 30.37829.58NoYes099
36R:R:M127 R:R:Y73 28.95295.99NoYes097
37R:R:D130 R:R:Y73 15.8226.9NoYes087
38R:R:F84 R:R:G116 17.76694.52YesNo068
39R:R:G116 R:R:S119 16.20273.71NoNo087
40R:R:S119 R:R:S80 14.62826.52NoNo078
41R:R:F123 R:R:S80 13.04353.96YesNo088
42R:R:I115 R:R:L83 11.26838.56NoNo056
43R:R:I115 R:R:T165 12.83776.08NoYes057
44R:R:T165 R:R:Y118 13.77416.24YesYes177
45R:R:D97 R:R:Y93 11.62348.05NoNo042
46R:R:F101 R:R:Y93 16.19768.25NoNo072
47R:R:F101 R:R:W99 22.994618.04NoYes079
48R:R:W99 R:R:Y94 18.4773.86YesNo095
49R:R:Q182 R:R:Y94 16.20279.02NoNo045
50R:R:L168 R:R:Y118 20.71013.52YesYes147
51R:R:F117 R:R:M121 99.989714.93YesNo087
52R:R:F214 R:R:I124 46.06643.77YesNo088
53R:R:F214 R:R:S128 18.65195.28YesNo289
54R:R:C217 R:R:S128 19.9285.16YesNo079
55R:R:F214 R:R:Y218 19.413416.5YesYes289
56R:R:Y218 R:R:Y300 21.85755.96YesYes299
57R:R:D130 R:R:R145 12.755316.68NoNo087
58R:R:C217 R:R:Y132 10.94428.06YesYes078
59R:R:F171 R:R:L168 10.2293.65NoYes044
60R:R:L168 R:R:T198 12.41575.9YesNo046
61R:R:M202 R:R:N199 32.54444.21YesYes155
62R:R:K195 R:R:N199 28.35615.6YesYes055
63R:R:K195 R:R:Y187 12.889119.11YesYes055
64R:R:E177 R:R:Q182 11.623410.19NoNo014
65R:R:T191 R:R:Y187 20.83357.49NoYes035
66R:R:T191 R:R:W194 10.46051.21NoNo032
67R:R:F211 R:R:W251 17.14959.02NoYes079
68R:R:F211 R:R:L207 15.667617.05NoNo078
69R:R:L207 R:R:N255 14.535612.36NoYes088
70R:R:N203 R:R:N255 10.46054.09YesYes068
71R:R:V240 R:R:Y218 30.99563.79NoYes079
72R:R:L222 R:R:V240 28.44872.98NoNo057
73R:R:I237 R:R:L222 22.79912.85YesNo1475
74R:R:I237 R:R:K233 11.49992.91YesNo076
75R:R:H264 R:R:L278 14.23215.14YesNo025
76R:R:L278 R:R:T261 15.45151.47NoNo054
77R:R:S265 R:R:T261 16.8151.6NoNo034
78R:R:K195 R:R:S265 21.99643.06YesNo053
79R:R:M121 R:R:W251 1008.14NoYes079
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 8KFZ_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.52
Number of Linked Nodes 270
Number of Links 294
Number of Hubs 36
Number of Links mediated by Hubs 142
Number of Communities 14
Number of Nodes involved in Communities 51
Number of Links involved in Communities 57
Path Summary
Number Of Nodes in MetaPath 80
Number Of Links MetaPath 79
Number of Shortest Paths 46204
Length Of Smallest Path 3
Average Path Length 13.3358
Length of Longest Path 28
Minimum Path Strength 1.22
Average Path Strength 6.67753
Maximum Path Strength 15.9133
Minimum Path Correlation 0.7
Average Path Correlation 0.926988
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.34783
Average % Of Corr. Nodes 49.9358
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 45.8688
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP51685
Sequence
>8KFZ_nogp_Chain_R
IQTNGKLLL AVFYCLLFV FSLLGNSLV ILVLVVCKK LRSITDVYL 
LNLALSDLL FVFSFPFQT YYLLDQWVF GTVMCKVVS GFYYIGFYS 
SMFFITLMS VDRYLAVVH AVYALKVRT IRMGTTLCL AVWLTAIMA 
TIPLLVFYQ VASEDGVLQ CYSFYNQQT LKWKIFTNF KMNILGLLI 
PFTIFMFCY IKILHQLKR CQNHNKTKA IRLVLIVVI ASLLFWVPF 
NVVLFLTSL HSMHILDGC SISQQLTYA THVTEIISF THCCVNPVI 
YAFVGEKFK KHLSEIFQK


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8TLMAProteinChemokineCCR8Homo sapiensAnti-murine CCR8 antibody--3.92023-12-20doi.org/10.1038/s41467-023-43601-8
8U1UAProteinChemokineCCR8Homo sapiensCCL1-Gi1/β1/γ23.12023-12-20doi.org/10.1038/s41467-023-43601-8
8U1U (No Gprot) AProteinChemokineCCR8Homo sapiensCCL1-3.12023-12-20doi.org/10.1038/s41467-023-43601-8
8KFXAProteinChemokineCCR8Homo sapiensLMD-009-Gi1/β1/γ22.962024-02-07doi.org/10.1126/sciadv.adj7500
8KFX (No Gprot) AProteinChemokineCCR8Homo sapiensLMD-009-2.962024-02-07doi.org/10.1126/sciadv.adj7500
8KFYAProteinChemokineCCR8Homo sapiensZK-756326-Gi1/β1/γ23.062024-02-07doi.org/10.1126/sciadv.adj7500
8KFY (No Gprot) AProteinChemokineCCR8Homo sapiensZK-756326-3.062024-02-07doi.org/10.1126/sciadv.adj7500
8KFZAProteinChemokineCCR8Homo sapiens--Gi1/β1/γ23.32024-02-07doi.org/10.1126/sciadv.adj7500
8KFZ (No Gprot) AProteinChemokineCCR8Homo sapiens--3.32024-02-07doi.org/10.1126/sciadv.adj7500
8XMLAProteinChemokineCCR8Homo sapiens--Gi1/β1/γ22.582025-01-01To be published
8XML (No Gprot) AProteinChemokineCCR8Homo sapiens--2.582025-01-01To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8KFZ_nogp.zip



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