Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:F46 4.0525407
2R:R:N53 6.61409
3R:R:I57 3.72457
4R:R:I69 5.662526
5R:R:Y73 6.04333627
6R:R:D81 7.0025419
7R:R:F84 6.425416
8R:R:F88 7.81417
9R:R:Y113 7.33333616
10R:R:Y118 5.212507
11R:R:M121 5.9425417
12R:R:F123 7.982538
13R:R:Y132 6.192568
14R:R:R145 7.5425427
15R:R:W158 7.06439
16R:R:L207 6.7975418
17R:R:P210 4.7275409
18R:R:F211 5.062517
19R:R:F214 6.93518
20R:R:C217 4.48407
21R:R:Y218 7.43833619
22R:R:F250 7.31408
23R:R:W251 8.405619
24R:R:F254 6.946517
25R:R:F290 9.0225417
26R:R:C293 5.3375418
27R:R:N296 9.0425419
28R:R:Y300 6.19509
29R:R:F307 8.54408
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:F46 R:R:V85 14.00695.24YesNo076
2R:R:S49 R:R:V85 16.4688.08NoNo086
3R:R:C294 R:R:S49 19.51556.89NoNo078
4R:R:C294 R:R:L45 12.92064.76NoNo077
5R:R:N53 R:R:S49 37.66584.47YesNo098
6R:R:D81 R:R:N53 49.81738.08YesYes099
7R:R:D81 R:R:L77 21.99584.07YesNo099
8R:R:L77 R:R:Y300 22.81293.52NoYes099
9R:R:M127 R:R:Y300 1008.38NoYes099
10R:R:M127 R:R:Y73 98.84644.79NoYes097
11R:R:I69 R:R:Y73 66.53539.67YesYes267
12R:R:I69 R:R:S68 60.47883.1YesNo067
13R:R:D71 R:R:S68 56.80642.94NoNo087
14R:R:D71 R:R:L60 47.57744.07NoNo087
15R:R:D81 R:R:N296 28.75418.08YesYes199
16R:R:N296 R:R:Y300 65.28555.81YesYes099
17R:R:L60 R:R:V56 26.06232.98NoNo479
18R:R:L60 R:R:L74 19.53474.15NoNo478
19R:R:A78 R:R:V56 24.94713.39NoNo099
20R:R:A78 R:R:I57 22.77453.25NoYes097
21R:R:I57 R:R:L75 16.07385.71YesNo576
22R:R:A301 R:R:F307 16.13158.32NoYes078
23R:R:A301 R:R:L74 18.36193.15NoNo078
24R:R:L66 R:R:L75 13.89164.15NoNo066
25R:R:L66 R:R:V72 11.62282.98NoNo066
26R:R:L126 R:R:Y73 24.94717.03NoYes277
27R:R:F123 R:R:V157 20.842110.49YesNo086
28R:R:L126 R:R:V157 23.05332.98NoNo076
29R:R:F112 R:R:S87 14.33382.64NoNo057
30R:R:S87 R:R:Y113 25.26445.09NoYes076
31R:R:F84 R:R:Y113 17.79479.28YesYes166
32R:R:C293 R:R:F84 25.12986.98YesYes186
33R:R:F290 R:R:F88 12.084216.08YesYes177
34R:R:E286 R:R:Y113 14.21845.61NoYes156
35R:R:F117 R:R:W251 14.25695.01NoYes189
36R:R:H292 R:R:W251 33.839622.22NoYes099
37R:R:H292 R:R:N296 35.560519.13NoYes099
38R:R:F117 R:R:Y118 17.092911.35NoYes087
39R:R:M121 R:R:P210 13.21863.35YesYes079
40R:R:F214 R:R:I124 34.87795.02YesNo088
41R:R:I124 R:R:Y300 35.31056.04NoYes089
42R:R:F214 R:R:S128 43.89543.96YesNo189
43R:R:R131 R:R:Y300 42.73227.2NoYes099
44R:R:R131 R:R:Y218 42.2138.23NoYes099
45R:R:S128 R:R:Y218 27.36015.09NoYes199
46R:R:C217 R:R:S128 68.60225.16YesNo079
47R:R:C217 R:R:Y132 57.75819.41YesYes078
48R:R:L133 R:R:Y132 11.97853.52NoYes058
49R:R:V136 R:R:Y132 35.810410.09NoYes678
50R:R:Q224 R:R:V136 33.00335.73NoNo057
51R:R:Q224 R:R:V135 27.11022.87NoNo058
52R:R:L225 R:R:V135 24.13962.98NoNo088
53R:R:F211 R:R:W251 29.0046.01YesYes179
54R:R:F211 R:R:L207 17.64082.44YesYes178
55R:R:L207 R:R:N203 11.87274.12YesNo186
56R:R:V244 R:R:Y218 10.61335.05NoYes189
57R:R:V240 R:R:Y218 19.08298.83NoYes079
58R:R:L222 R:R:V240 14.72795.96NoNo057
59R:R:I237 R:R:L222 12.31494.28NoNo075
60R:R:C228 R:R:L225 18.44841.59NoNo068
61R:R:F250 R:R:H292 27.01413.58YesNo089
62R:R:F250 R:R:V295 20.89987.87YesNo086
63R:R:I299 R:R:V295 18.82333.07NoNo086
64R:R:I242 R:R:I299 16.70832.94NoNo058
65R:R:I242 R:R:L239 14.98751.43NoNo058
66R:R:K235 R:R:L239 10.69994.23NoNo078
67R:R:F254 R:R:W251 28.2353.01YesYes179
68R:R:C293 R:R:N296 24.40883.15YesYes189
69R:R:E286 R:R:F254 22.147NoYes157
70R:R:F211 R:R:F214 39.96355.36YesYes178
71R:R:F211 R:R:M121 11.92086.22YesYes177
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 8XML_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.95
Number of Linked Nodes 202
Number of Links 226
Number of Hubs 29
Number of Links mediated by Hubs 110
Number of Communities 6
Number of Nodes involved in Communities 48
Number of Links involved in Communities 64
Path Summary
Number Of Nodes in MetaPath 72
Number Of Links MetaPath 71
Number of Shortest Paths 24869
Length Of Smallest Path 3
Average Path Length 12.0331
Length of Longest Path 28
Minimum Path Strength 1.38
Average Path Strength 6.22218
Maximum Path Strength 20.675
Minimum Path Correlation 0.7
Average Path Correlation 0.915423
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.54545
Average % Of Corr. Nodes 47.2541
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 43.1867
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP51685
Sequence
>8XML_nogp_Chain_R
VFYCLLFVF SLLGNSLVI LVLVVCKKL RSITDVYLL NLALSDLLF 
VFSFPFQTY YLLDQWVFG TVMCKVVSG FYYIGFYSS MFITLMSVD 
RYLAVVHAV YALKVRTIR MGTTLCLAV WLTAIMATI PLCYTNFKM 
NILGLLIPF TIFMFCYIK ILHQLKRCQ NHNKTKAIR LVLIVVIAS 
LLFWVPFNV VLFLTSTEI ISFTHCCVN PVIYAFVGE KFKKHLW


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8TLMAProteinChemokineCCR8Homo sapiensAnti-murine CCR8 antibody--3.92023-12-20doi.org/10.1038/s41467-023-43601-8
8U1UAProteinChemokineCCR8Homo sapiensCCL1-Gi1/β1/γ23.12023-12-20doi.org/10.1038/s41467-023-43601-8
8U1U (No Gprot) AProteinChemokineCCR8Homo sapiensCCL1-3.12023-12-20doi.org/10.1038/s41467-023-43601-8
8KFXAProteinChemokineCCR8Homo sapiensLMD-009-Gi1/β1/γ22.962024-02-07doi.org/10.1126/sciadv.adj7500
8KFX (No Gprot) AProteinChemokineCCR8Homo sapiensLMD-009-2.962024-02-07doi.org/10.1126/sciadv.adj7500
8KFYAProteinChemokineCCR8Homo sapiensZK-756326-Gi1/β1/γ23.062024-02-07doi.org/10.1126/sciadv.adj7500
8KFY (No Gprot) AProteinChemokineCCR8Homo sapiensZK-756326-3.062024-02-07doi.org/10.1126/sciadv.adj7500
8KFZAProteinChemokineCCR8Homo sapiens--Gi1/β1/γ23.32024-02-07doi.org/10.1126/sciadv.adj7500
8KFZ (No Gprot) AProteinChemokineCCR8Homo sapiens--3.32024-02-07doi.org/10.1126/sciadv.adj7500
8XMLAProteinChemokineCCR8Homo sapiens--Gi1/β1/γ22.582025-01-01To be published
8XML (No Gprot) AProteinChemokineCCR8Homo sapiens--2.582025-01-01To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8XML_nogp.zip



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