Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:P29 8.3575420
2L:L:F30 5.555420
3L:L:R32 8.71667620
4L:L:F35 6.11333690
5L:L:R51 5.8420
6L:L:I56 6.3075420
7L:L:L62 5.59430
8L:L:I63 4.475420
9L:L:W80 5.788530
10L:L:V81 5.42430
11L:L:H84 4.6475400
12L:L:R85 7.016530
13R:R:I20 4.524503
14R:R:P24 6.7425425
15R:R:Y42 8.35407
16R:R:I57 3.665407
17R:R:C63 4.4275405
18R:R:Y73 6.782577
19R:R:L75 4.585406
20R:R:D81 6.17667619
21R:R:F84 6.32833616
22R:R:F88 9.318517
23R:R:W99 8.83714749
24R:R:F101 9.4325447
25R:R:Y114 8.28333615
26R:R:F117 7.1925418
27R:R:Y118 6.65667617
28R:R:S119 4.5925457
29R:R:M121 5.5025417
30R:R:F122 5.68415
31R:R:F123 8.854558
32R:R:D130 8.305478
33R:R:Y132 8.17408
34R:R:R145 6.27577
35R:R:Q182 5.29833624
36R:R:Y184 7.58333622
37R:R:F186 6.872524
38R:R:W194 9.852502
39R:R:K195 7.09425
40R:R:N199 5.7825425
41R:R:M202 4.9925415
42R:R:F211 5.7325417
43R:R:F214 7.384588
44R:R:Y218 8.19589
45R:R:F250 5.106518
46R:R:W251 9.22333619
47R:R:L260 1.4075404
48R:R:F290 11.4625417
49R:R:H292 8.55619
50R:R:Y300 5.43667619
51R:R:F307 7.1425468
52R:R:L311 5.4625466
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:W99 R:R:Y94 27.517810.61YesNo095
2R:R:C183 R:R:W99 26.359115.67NoYes499
3L:L:M26 R:R:C183 26.8094.86NoNo009
4L:L:M26 R:R:Y113 27.054.79NoNo006
5R:R:F84 R:R:Y113 83.16049.28YesNo066
6R:R:F290 R:R:F84 11.64867.5YesYes176
7R:R:Y113 R:R:Y114 58.564412.91NoYes065
8R:R:Q182 R:R:Y94 27.04114.51YesNo045
9L:L:P29 R:R:Q182 40.62864.74YesYes204
10L:L:P29 R:R:Y184 39.513716.69YesYes202
11R:R:Y172 R:R:Y184 83.79694.96NoYes042
12R:R:Y114 R:R:Y172 84.021910.92YesNo054
13R:R:F186 R:R:Q182 38.60317.03YesYes244
14R:R:F186 R:R:Y184 39.90734.13YesYes242
15R:R:M202 R:R:Y114 29.11663.59YesYes155
16L:L:F30 L:L:R32 99.15554.28YesYes200
17L:L:R32 L:L:R51 59.41515.33YesYes200
18L:L:E71 L:L:R32 18.150910.47NoYes200
19L:L:R32 R:R:P24 19.11687.21YesYes205
20L:L:C34 L:L:I63 49.35733.27NoYes000
21L:L:I63 L:L:R51 17.98583.76YesYes200
22L:L:E71 L:L:I63 17.23954.1NoYes200
23L:L:I63 R:R:P24 17.26366.77YesYes205
24L:L:C34 L:L:C73 29.0887.28NoNo000
25L:L:C73 R:R:S22 26.27433.44NoNo003
26L:L:F37 L:L:L75 14.65254.87NoNo000
27L:L:C34 L:L:L75 17.47343.17NoNo000
28L:L:C38 R:R:C21 17.50917.28NoNo003
29R:R:C21 R:R:S22 20.43265.16NoNo033
30L:L:C38 R:R:I20 14.58376.55NoYes003
31L:L:F64 L:L:W80 14.83464.01NoYes300
32L:L:F64 L:L:L62 15.81213.65NoYes300
33L:L:L62 L:L:Y50 33.39259.38YesNo300
34L:L:H90 L:L:Y50 41.22678.71NoNo000
35L:L:H90 L:L:R51 42.17123.39NoYes000
36L:L:V81 L:L:W80 14.88018.58YesYes300
37L:L:L62 L:L:V81 16.83514.47YesYes300
38L:L:H84 L:L:W80 21.86718.46YesYes000
39L:L:L48 L:L:L88 11.95398.3NoNo000
40L:L:H84 L:L:L88 15.92462.57YesNo000
41R:R:K195 R:R:Y184 10.16324.78YesYes252
42R:R:F84 R:R:H292 44.91536.79YesYes169
43R:R:D81 R:R:H292 40.84475.04YesYes199
44R:R:D81 R:R:N53 14.809610.77YesNo099
45R:R:C293 R:R:F84 36.64195.59NoYes186
46R:R:C293 R:R:D81 36.31524.67NoYes189
47R:R:N53 R:R:P297 14.12586.52NoNo099
48R:R:P297 R:R:V56 13.19653.53NoNo099
49R:R:A78 R:R:V56 12.26543.39NoNo099
50R:R:A78 R:R:I57 11.33263.25NoYes097
51R:R:D81 R:R:N296 63.71966.73YesNo199
52R:R:N296 R:R:Y300 62.98236.98NoYes199
53R:R:M127 R:R:Y300 40.01543.59NoYes099
54R:R:M127 R:R:Y73 39.18524.79NoYes097
55R:R:D130 R:R:Y73 24.41579.2YesYes787
56R:R:D130 R:R:T70 17.02434.34YesNo088
57R:R:S68 R:R:T70 16.09156.4NoNo078
58R:R:D71 R:R:S68 15.15514.42NoNo087
59R:R:D71 R:R:K64 13.34654.15NoNo085
60R:R:H310 R:R:K64 12.404715.72NoNo045
61R:R:C63 R:R:H310 11.46115.9YesNo054
62R:R:F117 R:R:M202 23.94538.71YesYes185
63R:R:F117 R:R:M121 11.82453.73YesYes187
64R:R:F211 R:R:W251 12.46997.02YesYes179
65R:R:F211 R:R:L248 20.03896.09YesNo076
66R:R:L248 R:R:M215 18.27144.24NoNo064
67R:R:F214 R:R:M215 17.09313.73YesNo084
68R:R:R131 R:R:Y300 14.06066.17NoYes099
69R:R:R131 R:R:Y218 13.248312.35NoYes099
70R:R:V240 R:R:Y218 16.30935.05NoYes079
71R:R:L222 R:R:V240 14.83554.47NoNo057
72R:R:I237 R:R:L222 11.88254.28NoNo075
73R:R:I299 R:R:Y300 10.5067.25NoYes189
74L:L:F30 R:R:Q182 1004.68YesYes204
75R:R:F117 R:R:W251 15.14176.01YesYes189
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:K24 R:R:E28 6.75 0 No No 0 2 0 1
L:L:K24 R:R:Y94 7.17 0 No No 0 5 0 1
L:L:S25 R:R:Q91 8.66 0 No No 0 6 0 1
L:L:S25 R:R:E286 8.62 0 No No 0 5 0 1
L:L:M26 R:R:Y113 4.79 0 No No 0 6 0 1
L:L:M26 R:R:C183 4.86 0 No No 0 9 0 1
L:L:Q27 R:R:Y114 5.64 1 No Yes 0 5 0 1
L:L:Q27 R:R:M202 4.08 1 No Yes 0 5 0 1
L:L:Q27 R:R:L258 5.32 1 No No 0 5 0 1
L:L:V28 R:R:T282 4.76 0 No No 0 4 0 1
L:L:P29 R:R:Q182 4.74 2 Yes Yes 0 4 0 1
L:L:P29 R:R:Y184 16.69 2 Yes Yes 0 2 0 1
L:L:F30 R:R:E28 9.33 2 Yes No 0 2 0 1
L:L:F30 R:R:V180 3.93 2 Yes No 0 3 0 1
L:L:F30 R:R:Q182 4.68 2 Yes Yes 0 4 0 1
L:L:R32 R:R:P24 7.21 2 Yes Yes 0 5 0 1
L:L:R32 R:R:D26 13.1 2 Yes No 0 3 0 1
L:L:R32 R:R:D178 11.91 2 Yes No 0 2 0 1
L:L:F35 R:R:C25 5.59 9 Yes No 0 9 0 1
L:L:F35 R:R:C272 6.98 9 Yes No 0 8 0 1
L:L:F35 R:R:S275 5.28 9 Yes No 0 1 0 1
L:L:S36 R:R:S22 6.52 0 No No 0 3 0 1
L:L:C38 R:R:I20 6.55 0 No Yes 0 3 0 1
L:L:C38 R:R:C21 7.28 0 No No 0 3 0 1
L:L:Q40 R:R:I20 6.86 0 No Yes 0 3 0 1
L:L:R51 R:R:D178 10.72 2 Yes No 0 2 0 1
H:H:?900 L:L:N52 28.34 0 No No 0 0 1 0
L:L:S55 R:R:T191 7.99 0 No No 0 3 0 1
L:L:I56 R:R:Y184 6.04 2 Yes Yes 0 2 0 1
L:L:I56 R:R:T191 6.08 2 Yes No 0 3 0 1
L:L:S58 R:R:L192 7.51 0 No No 0 1 0 1
L:L:S58 R:R:H267 4.18 0 No No 0 1 0 1
L:L:N59 R:R:D270 4.04 0 No No 0 1 0 1
L:L:I63 R:R:P24 6.77 2 Yes Yes 0 5 0 1
L:L:E71 R:R:P24 9.43 2 No Yes 0 5 0 1
L:L:A72 R:R:I20 4.87 0 No Yes 0 3 0 1
H:H:?900 L:L:R85 9.81 0 No Yes 0 0 1 0
R:R:C21 R:R:S22 5.16 0 No No 3 3 1 1
R:R:P24 R:R:S23 3.56 2 Yes No 5 5 1 2
R:R:C25 R:R:C272 7.28 9 No No 9 8 1 1
R:R:Q91 R:R:Y42 12.4 0 No Yes 6 7 1 2
R:R:F290 R:R:Y42 5.16 1 Yes Yes 7 7 2 2
R:R:F84 R:R:Y113 9.28 1 Yes No 6 6 2 1
R:R:F290 R:R:F84 7.5 1 Yes Yes 7 6 2 2
R:R:W99 R:R:Y94 10.61 4 Yes No 9 5 2 1
R:R:Q182 R:R:Y94 4.51 2 Yes No 4 5 1 1
R:R:C106 R:R:W99 3.92 4 No Yes 9 9 2 2
R:R:C183 R:R:W99 15.67 4 No Yes 9 9 1 2
R:R:C106 R:R:C183 7.28 4 No No 9 9 2 1
R:R:Y113 R:R:Y114 12.91 0 No Yes 6 5 1 1
R:R:T165 R:R:Y114 3.75 0 No Yes 7 5 2 1
R:R:L168 R:R:Y114 12.89 0 No Yes 4 5 2 1
R:R:Y114 R:R:Y172 10.92 1 Yes No 5 4 1 2
R:R:M202 R:R:Y114 3.59 1 Yes Yes 5 5 1 1
R:R:F117 R:R:Y118 10.32 1 Yes Yes 8 7 2 2
R:R:F117 R:R:M202 8.71 1 Yes Yes 8 5 2 1
R:R:M202 R:R:Y118 3.59 1 Yes Yes 5 7 1 2
R:R:Y172 R:R:Y184 4.96 0 No Yes 4 2 2 1
R:R:E177 R:R:Q182 5.1 2 No Yes 1 4 2 1
R:R:E177 R:R:F186 7 2 No Yes 1 4 2 2
R:R:Q182 R:R:V180 5.73 2 Yes No 4 3 1 1
R:R:F186 R:R:Q182 7.03 2 Yes Yes 4 4 2 1
R:R:S185 R:R:Y184 8.9 0 No Yes 4 2 2 1
R:R:F186 R:R:Y184 4.13 2 Yes Yes 4 2 2 1
R:R:K195 R:R:Y184 4.78 2 Yes Yes 5 2 2 1
R:R:F186 R:R:T191 6.49 2 Yes No 4 3 2 1
R:R:K195 R:R:S265 9.18 2 Yes No 5 3 2 1
R:R:I196 R:R:S265 4.64 0 No No 3 3 2 1
R:R:F254 R:R:L258 14.61 0 No No 7 5 2 1
R:R:H264 R:R:S275 6.97 0 No No 2 1 2 1
R:R:E286 R:R:F290 12.83 0 No Yes 5 7 1 2
L:L:C73 R:R:S22 3.44 0 No No 0 3 0 1
L:L:S58 R:R:S265 3.26 0 No No 0 3 0 1
L:L:V28 R:R:T279 3.17 0 No No 0 4 0 1
L:L:F35 R:R:G271 3.01 9 Yes No 0 3 0 1
L:L:K70 R:R:I20 2.91 0 No Yes 0 3 0 1
L:L:S25 R:R:H283 2.79 0 No No 0 4 0 1
L:L:S93 R:R:G179 1.86 0 No No 0 4 0 1
R:R:G179 R:R:S176 1.86 0 No No 4 3 1 2
L:L:S31 R:R:A27 1.71 0 No No 0 3 0 1
R:R:C25 R:R:Q276 1.53 9 No No 9 3 1 2
L:L:L66 R:R:I20 1.43 0 No Yes 0 3 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8U1U_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.56
Number of Linked Nodes 353
Number of Links 402
Number of Hubs 52
Number of Links mediated by Hubs 201
Number of Communities 10
Number of Nodes involved in Communities 76
Number of Links involved in Communities 103
Path Summary
Number Of Nodes in MetaPath 76
Number Of Links MetaPath 75
Number of Shortest Paths 183862
Length Of Smallest Path 3
Average Path Length 18.4738
Length of Longest Path 38
Minimum Path Strength 1.38
Average Path Strength 6.36841
Maximum Path Strength 19.075
Minimum Path Correlation 0.7
Average Path Correlation 0.937557
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.125
Average % Of Corr. Nodes 44.1315
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 49.9277
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases   • Interleukin 8-like chemokines
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases   • Interleukin 8-like chemokines
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeNAG
PDB ResiduesH:H:?900
Environment DetailsOpen EMBL-EBI Page
CodeNAG
NameN-Acetylglucosamine
SynonymsN-Acetylglucosamine
Identifier
FormulaC8 H15 N O6
Molecular Weight221.208
SMILES
PubChem24139
Formal Charge0
Total Atoms30
Total Chiral Atoms5
Total Bonds30
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP51685
Sequence
>8U1U_nogp_Chain_R
DICSSPCDA ELIQTNGKL LLAVFYCLL FVFSLLGNS LVILVLVVC 
KKLRSITDV YLLNLALSD LLFVFSFPF QTYYLLDQW VFGTVMCKV 
VSGFYYIGF YSSMFFITL MSVDRYLAV VHAVYALKV RTIRMGTTL 
CLAVWLTAI MATIPLLVF YQVASEDGV LQCYSFYNQ QTLKWKIFT 
NFKMNILGL LIPFTIFMF CYIKILHQL KRCQNHNKT KAIRLVLIV 
VIASLLFWV PFNVVLFLT SLHSMHILD GCSISQQLT YATHVTEII 
SFTHCCVNP VIYAFVGEK FKKHLSEI


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8TLMAProteinChemokineCCR8Homo sapiensAnti-murine CCR8 antibody--3.92023-12-20doi.org/10.1038/s41467-023-43601-8
8U1UAProteinChemokineCCR8Homo sapiensCCL1-Gi1/β1/γ23.12023-12-20doi.org/10.1038/s41467-023-43601-8
8U1U (No Gprot) AProteinChemokineCCR8Homo sapiensCCL1-3.12023-12-20doi.org/10.1038/s41467-023-43601-8
8KFXAProteinChemokineCCR8Homo sapiensLMD-009-Gi1/β1/γ22.962024-02-07doi.org/10.1126/sciadv.adj7500
8KFX (No Gprot) AProteinChemokineCCR8Homo sapiensLMD-009-2.962024-02-07doi.org/10.1126/sciadv.adj7500
8KFYAProteinChemokineCCR8Homo sapiensZK-756326-Gi1/β1/γ23.062024-02-07doi.org/10.1126/sciadv.adj7500
8KFY (No Gprot) AProteinChemokineCCR8Homo sapiensZK-756326-3.062024-02-07doi.org/10.1126/sciadv.adj7500
8KFZAProteinChemokineCCR8Homo sapiens--Gi1/β1/γ23.32024-02-07doi.org/10.1126/sciadv.adj7500
8KFZ (No Gprot) AProteinChemokineCCR8Homo sapiens--3.32024-02-07doi.org/10.1126/sciadv.adj7500
8XMLAProteinChemokineCCR8Homo sapiens--Gi1/β1/γ22.582025-01-01To be published
8XML (No Gprot) AProteinChemokineCCR8Homo sapiens--2.582025-01-01To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8U1U_nogp.zip



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