Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 6.17400
2R:R:Y65 5.35833627
3R:R:L69 5.0075427
4R:R:F70 6.206507
5R:R:I80 5.025459
6R:R:V83 2.878508
7R:R:F87 5.0025405
8R:R:I93 6.0925406
9R:R:Y97 7.84467
10R:R:D105 7.804519
11R:R:N140 7.9875478
12R:R:F147 10.055438
13R:R:W150 6.772567
14R:R:Y156 5.156508
15R:R:T189 4.31407
16R:R:F193 2.755404
17R:R:V219 3.8575405
18R:R:P226 3.655409
19R:R:I230 5.4475408
20R:R:Y234 7.01408
21R:R:W272 6.91667649
22R:R:E275 4.53446
23R:R:V309 2.544507
24R:R:C318 3.635428
25R:R:N320 7.91419
26R:R:Y324 7.16833619
27R:R:Y338 7.3925405
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:E275 37.13978.98YesYes006
2R:R:E275 R:R:V309 37.59282.85YesYes067
3R:R:I308 R:R:V309 26.89211.54NoYes057
4R:R:I308 R:R:L304 24.70512.85NoNo052
5R:R:L304 R:R:Q54 18.22232.66NoNo024
6R:R:E51 R:R:Q54 13.91082.55NoNo024
7R:R:E275 R:R:W272 71.93633.27YesYes469
8R:R:N316 R:R:W272 73.22515.82NoYes099
9R:R:C271 R:R:N316 83.54296.3NoNo099
10R:R:C271 R:R:S315 81.2315.16NoNo095
11R:R:L69 R:R:S315 80.05164.5YesNo075
12R:R:L69 R:R:Y65 41.28728.21YesYes277
13R:R:F70 R:R:Y65 20.90143.09YesYes077
14R:R:F70 R:R:L113 14.64512.18YesNo079
15R:R:L113 R:R:T66 12.59861.47NoNo095
16R:R:I67 R:R:T66 10.53661.52NoNo045
17R:R:V116 R:R:Y65 13.08292.52NoYes077
18R:R:F314 R:R:Y65 11.44264.13NoYes267
19R:R:C318 R:R:L69 35.12463.17YesYes287
20R:R:C318 R:R:G73 37.93643.92YesNo088
21R:R:G73 R:R:I72 36.17121.76NoNo085
22R:R:I72 R:R:L322 34.39044.28NoNo056
23R:R:F268 R:R:W272 48.13729.02NoYes099
24R:R:F268 R:R:I230 39.38927.54NoYes098
25R:R:I230 R:R:S152 38.88934.64YesNo089
26R:R:S152 R:R:Y234 39.15495.09NoYes098
27R:R:I261 R:R:Y234 56.99459.67NoYes078
28R:R:I237 R:R:I261 49.18382.94NoNo087
29R:R:I237 R:R:Y156 47.52013.63NoYes088
30R:R:I157 R:R:Y156 40.56083.63NoYes058
31R:R:F153 R:R:I157 39.08467.54NoNo065
32R:R:F153 R:R:W150 38.6555.01NoYes067
33R:R:W150 R:R:Y97 86.128313.5YesYes677
34R:R:I93 R:R:Y97 79.74694.84YesYes067
35R:R:I93 R:R:P94 73.70153.39YesNo068
36R:R:P94 R:R:T92 72.03783.5NoNo087
37R:R:D95 R:R:T92 70.358510.12NoNo077
38R:R:D95 R:R:K334 59.93914.15NoNo075
39R:R:K334 R:R:V83 42.71664.55NoYes058
40R:R:N84 R:R:V83 27.86852.96NoYes078
41R:R:I80 R:R:N84 17.46472.83YesNo097
42R:R:F331 R:R:I80 10.9746.28NoYes599
43R:R:N316 R:R:N320 1009.54NoYes099
44R:R:D105 R:R:N320 92.90799.42YesYes199
45R:R:D105 R:R:S144 67.82794.42YesNo199
46R:R:A104 R:R:S144 69.06191.71NoNo089
47R:R:A104 R:R:S143 68.03871.71NoNo087
48R:R:S143 R:R:W182 63.977214.83NoNo079
49R:R:F147 R:R:W182 58.90039.02YesNo389
50R:R:F147 R:R:I181 57.189711.3YesNo087
51R:R:I181 R:R:W150 56.62734.7NoYes077
52R:R:F87 R:R:K334 16.67583.72YesNo055
53R:R:D95 R:R:M91 11.04438.32NoNo076
54R:R:N320 R:R:Y324 24.59585.81YesYes199
55R:R:D105 R:R:S317 53.503110.31YesNo098
56R:R:L108 R:R:S317 51.99566.01NoNo078
57R:R:L108 R:R:N140 50.47252.75NoYes078
58L:L:?1 R:R:L137 22.44016.26YesNo006
59R:R:L137 R:R:M133 15.9652.83NoNo065
60R:R:L129 R:R:M133 13.91081.41NoNo065
61R:R:N140 R:R:V139 44.36462.96YesNo085
62R:R:T189 R:R:V139 42.76346.35YesNo075
63R:R:L135 R:R:T189 13.30941.47NoYes067
64R:R:F193 R:R:L135 11.59884.87YesNo046
65R:R:Q138 R:R:T189 13.31725.67NoYes057
66R:R:T189 R:R:Y142 17.21473.75YesNo077
67R:R:F227 R:R:F268 28.22784.29NoNo069
68R:R:F227 R:R:F269 26.454711.79NoNo065
69R:R:F269 R:R:L273 24.66617.31NoNo055
70R:R:F223 R:R:L273 19.20643.65NoNo095
71R:R:F223 R:R:N276 17.355316.92NoNo098
72R:R:N276 R:R:V219 15.48864.43NoYes085
73R:R:I261 R:R:V238 15.46514.61NoNo075
74R:R:L258 R:R:V238 13.58284.47NoNo065
75R:R:L322 R:R:L327 32.59394.15NoNo066
76R:R:L327 R:R:M260 30.76621.41NoNo068
77R:R:K256 R:R:M260 27.2672.88NoNo078
78R:R:K256 R:R:R332 23.52572.48NoNo078
79R:R:E329 R:R:R332 21.80742.33NoNo048
80R:R:E329 R:R:R253 17.98025.82NoNo045
81R:R:L250 R:R:R253 16.05093.64NoNo035
82R:R:L250 R:R:P252 14.09834.93NoNo033
83R:R:P252 R:R:R251 12.132.88NoNo033
84R:R:H245 R:R:R251 10.146114.67NoNo043
85L:L:?1 R:R:H282 11.23963.63YesNo004
86R:R:R155 R:R:Y324 22.58856.17NoYes099
87R:R:R155 R:R:Y234 22.22928.23NoYes098
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:L137 6.26 0 Yes No 0 6 0 1
L:L:?1 R:R:E275 8.98 0 Yes Yes 0 6 0 1
L:L:?1 R:R:H282 3.63 0 Yes No 0 4 0 1
L:L:?1 R:R:H300 5.81 0 Yes No 0 4 0 1
R:R:D111 R:R:L137 13.57 0 No No 7 6 2 1
R:R:E275 R:R:W272 3.27 4 Yes Yes 6 9 1 2
R:R:A313 R:R:W272 3.89 4 No Yes 8 9 2 2
R:R:A313 R:R:E275 3.02 4 No Yes 8 6 2 1
R:R:F278 R:R:H282 7.92 0 No No 5 4 2 1
R:R:H282 R:R:H302 4.78 0 No No 4 4 1 2
R:R:E275 R:R:V309 2.85 4 Yes Yes 6 7 1 2
R:R:L137 R:R:M133 2.83 0 No No 6 5 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8XOF_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.94
Number of Linked Nodes 248
Number of Links 265
Number of Hubs 27
Number of Links mediated by Hubs 107
Number of Communities 8
Number of Nodes involved in Communities 32
Number of Links involved in Communities 37
Path Summary
Number Of Nodes in MetaPath 88
Number Of Links MetaPath 87
Number of Shortest Paths 33443
Length Of Smallest Path 3
Average Path Length 15.8316
Length of Longest Path 44
Minimum Path Strength 1.34
Average Path Strength 5.98541
Maximum Path Strength 13.54
Minimum Path Correlation 0.7
Average Path Correlation 0.924047
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.0303
Average % Of Corr. Nodes 45.8726
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 34.4379
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeA1L
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeA1L
Name[2-[[(2S)-1-[bis(phenylmethyl)amino]-5-[[N-(methylcarbamoyl)carbamimidoyl]amino]-1-oxidanylidene-pentan-2-yl]amino]-2-oxidanylidene-ethyl]-diazonio-azanide
Synonyms
Identifier
FormulaC24 H31 N9 O3
Molecular Weight493.561
SMILES
PubChem44129754
Formal Charge0
Total Atoms67
Total Chiral Atoms1
Total Bonds68
Total Aromatic Bonds12

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ99527
Sequence
>8XOF_nogp_Chain_R
SEHQQYVIG LFLSCLYTI FLFPIGFVG NILILVVNI SFREKMTIP 
DLYFINLAV ADLILVADS LIEVFNLHE RYYDIAVLC TFMSLFLQV 
NMYSSVFFL TWMSFDRYI ALARAMRCS LFRTKHHAR LSCGLIWMA 
SVSATLVPF TAVHLVREV QWLEVTLGF IVPFAIIGL CYSLIVRVL 
VRAHRHRGL RPRRQKALR MILAVVLVF FVCWLPENV FISVHLHAH 
PLTGHIVNL AAFSNSCLN PLIYSFLGE TFRDKLRLY IEQK


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8XOGAOrphanOrphanGPR30Homo sapiens--chim(NtGi1-Gs-CtGq)/β1/γ22.92024-04-10To be published
8XOG (No Gprot) AOrphanOrphanGPR30Homo sapiens--2.92024-04-10To be published
8XOJAOrphanOrphanGPR30Homo sapiens--chim(NtGi1-Gs-CtGq)/β1/γ23.12024-04-10To be published
8XOJ (No Gprot) AOrphanOrphanGPR30Homo sapiens--3.12024-04-10To be published
8XOIAOrphanOrphanGPR30Homo sapiens--chim(NtGi1-Gs-CtGq)/β1/γ23.22024-04-10To be published
8XOI (No Gprot) AOrphanOrphanGPR30Homo sapiens--3.22024-04-10To be published
8XOHAOrphanOrphanGPR30Homo sapiens--chim(NtGi1-Gs-CtGq)/β1/γ23.22024-04-10To be published
8XOH (No Gprot) AOrphanOrphanGPR30Homo sapiens--3.22024-04-10To be published
8XOFAOrphanOrphanGPR30Homo sapiensLys05-chim(NtGi1-Gs-CtGq)/β1/γ22.62024-04-10doi.org/10.1038/s41422-024-00963-y
8XOF (No Gprot) AOrphanOrphanGPR30Homo sapiensLys05-2.62024-04-10doi.org/10.1038/s41422-024-00963-y




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8XOF_nogp.zip



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