Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:F5 6.23667614
2R:R:Y6 6.02716
3R:R:N34 7.735429
4R:R:F61 5.194569
5R:R:L73 3.78428
6R:R:K76 4.482528
7R:R:L79 3.435486
8R:R:R94 5.8225402
9R:R:F108 3.098506
10R:R:F110 2.61507
11R:R:F114 6.31407
12R:R:S118 2.7525477
13R:R:Q122 4.778577
14R:R:F171 4.3225404
15R:R:F174 5.805406
16R:R:V175 6.3625414
17R:R:Y177 5.648519
18R:R:W182 4.735409
19R:R:I185 5.1125407
20R:R:Q186 9.4175415
21R:R:Y199 6.05406
22R:R:L225 3.77439
23R:R:T271 4.504508
24R:R:F274 5.022509
25R:R:Y287 2.7404
26R:R:D305 6.4925417
27R:R:N319 3.7625409
28R:R:F326 4.02254135
29R:R:R327 5.734549
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:F174 R:R:I185 71.0613.77YesYes067
2R:R:F184 R:R:I185 62.20357.54NoYes087
3R:R:F184 R:R:Y177 53.59667.22NoYes089
4R:R:Y177 R:R:Y6 31.31537.94YesYes196
5R:R:F5 R:R:Y6 17.939710.32YesYes146
6R:R:V175 R:R:Y177 10.96523.79YesYes149
7R:R:G30 R:R:T29 11.07551.82NoNo096
8R:R:G30 R:R:K76 11.70115.23NoYes298
9R:R:K76 R:R:N34 13.65036.99YesYes289
10R:R:N34 R:R:P320 20.61284.89YesNo099
11R:R:N319 R:R:P320 21.21443.26YesNo099
12R:R:L68 R:R:N319 56.20752.75NoYes099
13R:R:L68 R:R:Q122 56.42816.65NoYes097
14R:R:Q122 R:R:S118 56.85322.89YesYes777
15R:R:S118 R:R:S160 58.57783.26YesNo077
16R:R:F114 R:R:S160 1007.93YesNo077
17R:R:F114 R:R:F115 18.82419.65YesNo078
18R:R:F115 R:R:L79 17.59282.44NoYes086
19R:R:F108 R:R:L79 16.42372.44YesYes066
20R:R:C183 R:R:F108 11.33014.19NoYes096
21R:R:R327 R:R:R332 13.34553.2YesNo096
22R:R:D262 R:R:R332 14.460511.91NoNo096
23R:R:D262 R:R:F326 15.49724.78NoYes095
24R:R:F326 R:R:L269 21.83412.44YesNo055
25R:R:L266 R:R:L269 23.97984.15NoNo085
26R:R:F61 R:R:L266 25.05464.87YesNo098
27R:R:F61 R:R:M126 63.5233.73YesNo699
28R:R:L267 R:R:M126 65.47624.24NoNo099
29R:R:L267 R:R:N218 69.08586.87NoNo099
30R:R:N218 R:R:T271 71.750911.7NoYes098
31R:R:L123 R:R:T271 80.37382.95NoYes088
32R:R:F274 R:R:L123 81.2147.31YesNo098
33R:R:F274 R:R:T120 41.07332.59YesNo097
34R:R:L210 R:R:T120 41.28785.9NoNo067
35R:R:L206 R:R:L210 40.83062.77NoNo056
36R:R:L117 R:R:L206 40.50782.77NoNo1085
37R:R:L117 R:R:S160 41.69693NoNo087
38R:R:F274 R:R:N319 47.02714.83YesYes099
39R:R:R130 R:R:S133 21.34483.95NoNo099
40R:R:A263 R:R:R130 38.00514.15NoNo089
41R:R:A263 R:R:F61 38.95764.16NoYes089
42R:R:F168 R:R:F174 79.3331.07NoYes046
43R:R:F110 R:R:F168 81.61311.07YesNo074
44R:R:F110 R:R:L161 41.51042.44YesNo073
45R:R:F114 R:R:L161 41.76914.87YesNo073
46R:R:C164 R:R:F110 41.51042.79NoYes087
47R:R:C164 R:R:F114 41.76912.79NoYes087
48R:R:S133 R:R:Y140 11.308111.45NoNo598
49R:R:E260 R:R:R130 16.76668.14NoNo099
50R:R:E260 R:R:L225 12.33283.98NoYes399
51R:R:I144 R:R:Y140 10.33954.84NoNo058
52R:R:F174 R:R:P167 12.69188.67YesNo069
53R:R:Q186 R:R:V196 13.32752.87YesNo055
54R:R:H189 R:R:V196 11.12565.54NoNo045
55R:R:A289 R:R:L197 10.09281.58NoNo074
56R:R:H189 R:R:L197 13.44981.29NoNo044
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 9EI5
Class A
SubFamily Lipid
Type Prostanoid
SubType DP1
Species Homo Sapiens
Ligand -
Other Ligand(s) -
Protein Partners -
PDB Resolution 2.84
Date 2025-09-03
D.O.I. doi.org/10.1038/s41467-025-64002-z
Net Summary
Imin 2.44
Number of Linked Nodes 282
Number of Links 303
Number of Hubs 29
Number of Links mediated by Hubs 115
Number of Communities 13
Number of Nodes involved in Communities 58
Number of Links involved in Communities 69
Path Summary
Number Of Nodes in MetaPath 57
Number Of Links MetaPath 56
Number of Shortest Paths 67908
Length Of Smallest Path 3
Average Path Length 20.1727
Length of Longest Path 37
Minimum Path Strength 1.07
Average Path Strength 4.69675
Maximum Path Strength 14.79
Minimum Path Correlation 0.7
Average Path Correlation 0.925366
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.22581
Average % Of Corr. Nodes 38.0747
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 38.6958
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier
SCOP2Family Identifier
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ13258
Sequence
>9EI5_Chain_R
MKSPFYRCQ NTTSVEKGN SAVMGGVLF STGLLGNLL ALGLLARSG 
LSVFYMLVC GLTVTDLLG KCLLSPVVL AAYAQNRSL RVLAPALDN 
SLCQAFAFF MSFFGLSST LQLLAMALE WLSLGHPFF YRRHITLRL 
GALVAPVVS AFSLAFCAL PFMGFGKFV QYCPGTWCF IQMVHEEGS 
LSVLGYSVL YSSLMALLV LATVLCNLG AMRNLYAMH RRLQLEELD 
LLLLALMTV LFTMCSLPV IYRAYYGAF KDVKEKNRT SEEAEDLRA 
LRFLSVISI VPWIFIIFR SPVFRIFFH KIFIRPRAN


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
9E9SALipidProstanoidDP1Homo sapiensPGD2-Gs/β1/γ12.682025-09-03To be published
9E9S (No Gprot) ALipidProstanoidDP1Homo sapiensPGD2-2.682025-09-03To be published
9EE5ALipidProstanoidDP1Homo sapiensONO-2550289--2.892025-09-03doi.org/10.1038/s41467-025-64002-z
9EKHALipidProstanoidDP1Homo sapiensONO-3030297--2.892025-09-03doi.org/10.1038/s41467-025-64002-z
9UWDALipidProstaglandinDP1Homo sapiens----2025-04-09doi.org/10.1073/pnas.2501902122
8ZVZALipidProstaglandinDP1Homo sapiensBW245C-Gs/β1/γ22.352025-05-28doi.org/10.1073/pnas.2501902122
8ZVZ (No Gprot) ALipidProstaglandinDP1Homo sapiensBW245C-2.352025-05-28doi.org/10.1073/pnas.2501902122
8ZW0ALipidProstaglandinDP1Homo sapiensPGD2-Gs/β1/γ22.722025-05-28doi.org/10.1073/pnas.2501902122
8ZW0 (No Gprot) ALipidProstaglandinDP1Homo sapiensPGD2-2.722025-05-28doi.org/10.1073/pnas.2501902122
9AU0ALipidProstaglandinDP1Homo sapiensBW245C-Gs/β1/γ22.452025-08-27To be published
9AU0 (No Gprot) ALipidProstaglandinDP1Homo sapiensBW245C-2.452025-08-27To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9EI5.zip



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