Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 8.417691310
2R:R:Y54 8.304517
3R:R:V60 2.85546
4R:R:F72 8.285407
5R:R:M78 5.648527
6R:R:V81 4.19456
7R:R:F85 4.034508
8R:R:L89 6.695419
9R:R:C100 3.3225416
10R:R:Y108 5.055405
11R:R:F115 3.34667606
12R:R:F136 3.59833616
13R:R:Y146 8.482508
14R:R:W172 7.2375409
15R:R:Y206 9.12713
16R:R:Q214 8.0725413
17R:R:H217 6.5625416
18R:R:F222 5.1875416
19R:R:F225 4.016516
20R:R:Y226 7.2775418
21R:R:Y237 7.706569
22R:R:L244 2.81538
23R:R:I251 7.705434
24R:R:I263 5.065403
25R:R:R266 4.9825437
26R:R:F280 6.075419
27R:R:W284 5.12333618
28R:R:H288 7.84417
29R:R:L290 4.8625404
30R:R:Y291 8.085416
31R:R:H308 4.18403
32R:R:F320 5.57167617
33R:R:N322 5.355419
34R:R:H340 6.26525
35R:R:F341 6.545406
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:C100 53.47483.63YesYes106
2R:R:C100 R:R:Y54 29.21552.69YesYes167
3R:R:D104 R:R:Y54 11.364320.69NoYes067
4L:L:?1 R:R:R316 25.081216.69YesNo105
5R:R:F320 R:R:R316 24.61863.21YesNo175
6R:R:I58 R:R:Y54 26.74974.84NoYes177
7R:R:C100 R:R:F320 24.40692.79YesYes167
8R:R:F320 R:R:I58 42.94227.54YesNo177
9R:R:I58 R:R:L97 67.79212.85NoNo076
10R:R:G61 R:R:L97 18.3041.71NoNo086
11R:R:G61 R:R:V60 12.22073.68NoYes486
12R:R:D93 R:R:L97 55.35498.14NoNo096
13R:R:D93 R:R:N65 48.464416.16NoNo099
14R:R:L94 R:R:N65 45.05865.49NoNo079
15R:R:I62 R:R:L94 43.40491.43NoNo067
16R:R:I62 R:R:L63 41.8251.43NoNo064
17R:R:G64 R:R:L63 40.37313.42NoNo084
18R:R:G64 R:R:I67 37.84333.53NoNo087
19R:R:F341 R:R:I67 36.61785.02YesNo067
20L:L:?1 R:R:W284 75.81465.22YesYes108
21R:R:N322 R:R:W284 87.56776.78YesYes198
22R:R:N322 R:R:N326 1005.45YesNo199
23R:R:L89 R:R:N326 98.666213.73YesNo199
24R:R:L89 R:R:T137 98.76465.9YesNo097
25R:R:F85 R:R:T137 94.22195.19YesNo087
26R:R:F85 R:R:T164 92.2632.59YesNo087
27R:R:T164 R:R:V81 90.49124.76NoYes076
28R:R:T80 R:R:V81 88.07463.17NoYes586
29R:R:N83 R:R:T80 88.25674.39NoNo088
30R:R:F72 R:R:N83 85.60394.83YesNo078
31R:R:F72 R:R:T87 82.458918.16YesNo076
32R:R:L68 R:R:T87 82.16362.95NoNo096
33R:R:I86 R:R:L68 97.27344.28NoNo089
34R:R:F341 R:R:Y331 29.825811.35YesNo067
35R:R:F337 R:R:Y331 28.13272.06NoNo097
36R:R:I86 R:R:L141 95.86574.28NoNo089
37R:R:S88 R:R:T137 20.07583.2NoNo097
38R:R:S88 R:R:W172 16.82744.94NoYes099
39L:L:?1 R:R:R127 27.53725.56YesNo006
40R:R:R127 R:R:T99 24.4665.17NoNo066
41R:R:I126 R:R:T99 22.75813.04NoNo056
42R:R:I126 R:R:V122 19.30311.54NoNo054
43R:R:G119 R:R:V122 17.56571.84NoNo054
44R:R:F115 R:R:G119 15.81851.51YesNo065
45L:L:?1 R:R:S205 19.55414.58YesNo004
46R:R:S205 R:R:Y206 14.917813.99NoYes043
47R:R:P207 R:R:Y206 16.7291.39NoYes033
48R:R:F185 R:R:P207 13.33795.78NoNo043
49L:L:?1 R:R:H217 22.40872.94YesYes106
50R:R:H217 R:R:Y206 14.957213.07YesYes163
51R:R:V133 R:R:W172 11.881118.39NoYes079
52L:L:?1 R:R:F225 12.67353.72YesYes106
53R:R:F280 R:R:V135 13.42653.93YesNo098
54R:R:P229 R:R:V135 12.893.53NoNo098
55R:R:L141 R:R:R145 95.17189.72NoNo099
56R:R:R145 R:R:Y237 94.4687.2NoYes099
57R:R:S142 R:R:Y237 89.649612.72NoYes699
58R:R:S142 R:R:Y236 89.26575.09NoNo097
59R:R:Y146 R:R:Y236 87.690711.91YesNo087
60R:R:V150 R:R:Y146 41.583813.88NoYes078
61R:R:I240 R:R:Y146 39.43793.63NoYes088
62R:R:V149 R:R:V150 38.55693.21NoNo097
63R:R:I240 R:R:V149 38.37983.07NoNo089
64R:R:L244 R:R:V149 74.59892.98YesNo089
65L:L:?1 R:R:Y291 17.34918.95YesYes106
66R:R:F222 R:R:H288 11.26595.66YesYes167
67R:R:A270 R:R:L244 17.64451.58NoYes078
68R:R:L244 R:R:R266 32.57213.64YesYes387
69R:R:I251 R:R:R266 27.90147.52YesYes347
70R:R:I251 R:R:I263 20.454810.3YesYes043
71R:R:I263 R:R:R260 12.86542.51YesNo033
72R:R:I269 R:R:L244 22.4532.85NoYes078
73R:R:I269 R:R:L333 20.22342.85NoNo076
74R:R:L333 R:R:T272 17.934811.79NoNo068
75R:R:T272 R:R:W332 10.30122.43NoNo086
76R:R:C283 R:R:N322 10.33573.15NoYes089
77R:R:A319 R:R:W284 11.16742.59NoYes088
78L:L:?1 R:R:N287 24.963123.06YesNo007
79R:R:A319 R:R:N287 10.3754.69NoNo087
80R:R:N287 R:R:S315 31.24324.47NoNo076
81R:R:L290 R:R:S315 27.44864.5YesNo046
82R:R:H294 R:R:L290 12.51115.14NoYes044
83R:R:F337 R:R:L68 28.02447.31NoNo099
84R:R:F280 R:R:N322 11.61046.04YesYes199
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:C100 3.63 1 Yes Yes 0 6 0 1
L:L:?1 R:R:R127 5.56 1 Yes No 0 6 0 1
L:L:?1 R:R:L128 9.51 1 Yes No 0 5 0 1
L:L:?1 R:R:V131 7.96 1 Yes No 0 8 0 1
L:L:?1 R:R:S205 4.58 1 Yes No 0 4 0 1
L:L:?1 R:R:H217 2.94 1 Yes Yes 0 6 0 1
L:L:?1 R:R:C221 4.85 1 Yes No 0 5 0 1
L:L:?1 R:R:F225 3.72 1 Yes Yes 0 6 0 1
L:L:?1 R:R:W284 5.22 1 Yes Yes 0 8 0 1
L:L:?1 R:R:N287 23.06 1 Yes No 0 7 0 1
L:L:?1 R:R:H288 12.76 1 Yes Yes 0 7 0 1
L:L:?1 R:R:Y291 8.95 1 Yes Yes 0 6 0 1
L:L:?1 R:R:R316 16.69 1 Yes No 0 5 0 1
R:R:C100 R:R:Y54 2.69 1 Yes Yes 6 7 1 2
R:R:F320 R:R:Y54 8.25 1 Yes Yes 7 7 2 2
R:R:R127 R:R:T99 5.17 0 No No 6 6 1 2
R:R:C100 R:R:R316 4.18 1 Yes No 6 5 1 1
R:R:C100 R:R:F320 2.79 1 Yes Yes 6 7 1 2
R:R:G132 R:R:V131 3.68 1 No No 7 8 2 1
R:R:V131 R:R:W284 4.9 1 No Yes 8 8 1 1
R:R:F136 R:R:G132 3.01 1 Yes No 6 7 2 2
R:R:F225 R:R:G132 4.52 1 Yes No 6 7 1 2
R:R:F136 R:R:V224 2.62 1 Yes No 6 5 2 2
R:R:F136 R:R:F225 6.43 1 Yes Yes 6 6 2 1
R:R:E182 R:R:S205 2.87 0 No No 5 4 2 1
R:R:S205 R:R:Y206 13.99 0 No Yes 4 3 1 2
R:R:Q214 R:R:Y206 5.64 1 Yes Yes 3 3 2 2
R:R:H217 R:R:Y206 13.07 1 Yes Yes 6 3 1 2
R:R:Q214 R:R:Y291 4.51 1 Yes Yes 3 6 2 1
R:R:H217 R:R:Y291 8.71 1 Yes Yes 6 6 1 1
R:R:S218 R:R:Y291 10.17 0 No Yes 5 6 2 1
R:R:C221 R:R:F225 2.79 1 No Yes 5 6 1 1
R:R:F222 R:R:Y226 5.16 1 Yes Yes 6 8 2 2
R:R:F222 R:R:H288 5.66 1 Yes Yes 6 7 2 1
R:R:F225 R:R:V224 2.62 1 Yes No 6 5 1 2
R:R:H288 R:R:Y226 8.71 1 Yes Yes 7 8 1 2
R:R:F280 R:R:W284 7.02 1 Yes Yes 9 8 2 1
R:R:F280 R:R:N322 6.04 1 Yes Yes 9 9 2 2
R:R:H288 R:R:W284 4.23 1 Yes Yes 7 8 1 1
R:R:A319 R:R:W284 2.59 0 No Yes 8 8 2 1
R:R:N322 R:R:W284 6.78 1 Yes Yes 9 8 2 1
R:R:N287 R:R:S315 4.47 0 No No 7 6 1 2
R:R:A319 R:R:N287 4.69 0 No No 8 7 2 1
R:R:F320 R:R:R316 3.21 1 Yes No 7 5 2 1
R:R:H217 R:R:P181 1.53 1 Yes No 6 7 1 2
R:R:R127 R:R:V103 1.31 0 No No 6 5 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9K07_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.59
Number of Linked Nodes 247
Number of Links 285
Number of Hubs 35
Number of Links mediated by Hubs 144
Number of Communities 6
Number of Nodes involved in Communities 49
Number of Links involved in Communities 72
Path Summary
Number Of Nodes in MetaPath 85
Number Of Links MetaPath 84
Number of Shortest Paths 53408
Length Of Smallest Path 3
Average Path Length 16.761
Length of Longest Path 39
Minimum Path Strength 1.27
Average Path Strength 6.07045
Maximum Path Strength 19.875
Minimum Path Correlation 0.7
Average Path Correlation 0.927389
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.0303
Average % Of Corr. Nodes 46.0616
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 36.2284
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
Code_L_
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
Code_L_
Name
Synonyms
Identifier
Formula
Molecular Weight
SMILES
PubChem
Formal Charge
Total Atoms
Total Chiral Atoms
Total Bonds
Total Aromatic Bonds

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP32247
Sequence
>9K07_nogp_Chain_R
CAIYITYAV IISVGILGN AILIKVFFK TKSMQTVPN IFITSLAFG 
DLLLLLTCV PVDATHYLA EGWLFGRIG CKVLSFIRL TSVGVSVFT 
LTILSADRY KAVVKPLER QPSNAILKT CVKAGCVWI VSMIFALPE 
AIFTSYPVS KKLLQEIHS LLCFLVFYI IPLSIISVY YSLIARTLY 
KSTLNIPTE EQSHARKQI ESRKRIART VLVLVALFA LCWLPNHLL 
YLYHSFTSA MHFIFTIFS RVLAFSNSC VNPFALYWL SKSFQKHFK 
AQL


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8Y52APeptideBombesinBB3Homo sapiensBA1-chim(NtGi1-Gs-CtGq)/β1/γ22.92024-09-11doi.org/10.1016/j.celrep.2024.114511
8Y52 (No Gprot) APeptideBombesinBB3Homo sapiensBA1-2.92024-09-11doi.org/10.1016/j.celrep.2024.114511
8Y53APeptideBombesinBB3Homo sapiensMK5046-chim(NtGi1-Gs-CtGq)/β1/γ22.932024-09-11doi.org/10.1016/j.celrep.2024.114511
8Y53 (No Gprot) APeptideBombesinBB3Homo sapiensMK5046-2.932024-09-11doi.org/10.1016/j.celrep.2024.114511
8Y51APeptideBombesinBB3Homo sapiens--chim(NtGi1-Gs-CtGq)/β1/γ23.32025-02-12To be published
8Y51 (No Gprot) APeptideBombesinBB3Homo sapiens--3.32025-02-12To be published
9LWPAPeptideBombesinBB3Homo sapiens--chim(NtGi2L-Gs-CtGq)/β1/γ22.932025-07-16doi.org/10.1016/j.apsb.2025.06.025
9LWP (No Gprot) APeptideBombesinBB3Homo sapiens--2.932025-07-16doi.org/10.1016/j.apsb.2025.06.025
9K07APeptideBombesinBB3Homo sapiensDSO-5a-chim(NtGi2L-Gs-CtGq)/β1/γ22.872025-08-27doi.org/10.1016/j.apsb.2025.06.025
9K07 (No Gprot) APeptideBombesinBB3Homo sapiensDSO-5a-2.872025-08-27doi.org/10.1016/j.apsb.2025.06.025




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9K07_nogp.zip



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