Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:I2 5.0275436
2R:R:M11 8.262514
3R:R:Y14 8.62571714
4R:R:I28 4.7225429
5R:R:L32 5.25428
6R:R:W36 7.48406
7R:R:L42 6.034527
8R:R:M43 3.965427
9R:R:P44 7.0925426
10R:R:D46 6.228529
11R:R:L49 4.965428
12R:R:Q60 5.90333617
13R:R:S63 5.48515
14R:R:M64 5.8025413
15R:R:N67 6.375413
16R:R:F72 9.775413
17R:R:W85 10.5112815
18R:R:E86 5.52414
19R:R:N89 9.355418
20R:R:F93 7.68833616
21R:R:L95 6.1625407
22R:R:N96 8.755417
23R:R:F110 7.51408
24R:R:F115 4.7975409
25R:R:I150 3.8975402
26R:R:Q177 6.02401
27R:R:H181 4.344512
28R:R:F192 6.13167618
29R:R:T196 6.2125417
30R:R:M200 3.98408
31R:R:I207 3.244508
32R:R:F233 5.145407
33R:R:F236 9.11517
34R:R:Y239 7.34625817
35R:R:F240 13.0925406
36R:R:I243 6.548513
37R:R:K254 6.01513
38R:R:W257 12.9425403
39R:R:W259 13.995613
40R:R:W261 15.02414
41R:R:E262 9.554513
42R:R:Y266 7.905814
43R:R:L270 3.4675407
44R:R:H272 10.6525419
45L:L:?1 7.481010
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:E17 R:R:L270 11.62352.65NoYes087
2R:R:I21 R:R:L270 25.99354.28NoYes087
3R:R:I21 R:R:Q60 28.84576.86NoYes087
4R:R:F252 R:R:K254 15.91453.72NoYes123
5R:R:F252 R:R:W257 15.200525.05NoYes023
6R:R:Q60 R:R:Y266 46.74910.15YesYes174
7R:R:E262 R:R:Y266 12.63254.49YesYes134
8R:R:I22 R:R:Q60 12.58515.49NoYes077
9R:R:M64 R:R:Y14 13.35747.18YesYes134
10R:R:M64 R:R:W61 17.67755.82YesNo033
11R:R:F57 R:R:W61 18.39875.01NoNo063
12R:R:F57 R:R:S25 12.27193.96NoNo069
13R:R:I269 R:R:Y266 32.45913.63NoYes084
14R:R:I269 R:R:R56 18.0611.27NoNo089
15R:R:H272 R:R:R56 17.564615.8YesNo099
16R:R:H272 R:R:L276 61.87676.43YesNo099
17R:R:L276 R:R:L49 60.53984.15NoYes098
18L:L:?1 R:R:K254 25.07927.42YesYes103
19L:L:?1 R:R:W85 58.135730.71YesYes105
20R:R:W85 R:R:Y239 76.4073.86YesYes157
21R:R:F236 R:R:Y239 97.52674.13YesYes177
22R:R:F236 R:R:H272 32.881710.18YesYes179
23R:R:D46 R:R:L49 46.31924.07YesYes298
24R:R:D46 R:R:L42 12.49778.14YesYes297
25R:R:D46 R:R:P281 23.44014.83YesNo297
26R:R:M43 R:R:P281 20.30386.71YesNo277
27R:R:M43 R:R:P44 17.21853.35YesYes276
28R:R:F126 R:R:P44 11.204611.56NoYes276
29R:R:F236 R:R:N96 12.592410.87YesYes177
30R:R:L99 R:R:N96 21.25455.49NoYes097
31R:R:I48 R:R:L99 17.0917.14NoNo099
32L:L:?1 R:R:E86 19.27663.49YesYes104
33R:R:E86 R:R:I90 18.36968.2YesNo046
34R:R:I90 R:R:T137 15.62316.08NoNo068
35R:R:L91 R:R:T137 11.44878.84NoNo068
36R:R:F93 R:R:P188 11.14272.89YesNo068
37R:R:F192 R:R:F236 87.85563.22YesYes187
38R:R:F192 R:R:T196 1007.78YesYes187
39R:R:F110 R:R:F198 23.421812.86YesNo087
40R:R:F110 R:R:S109 49.32432.64YesNo087
41R:R:Q206 R:R:S109 51.60465.78NoNo057
42R:R:Q206 R:R:R222 54.121614.02NoNo059
43R:R:I207 R:R:R222 68.81582.51YesNo089
44R:R:I207 R:R:L203 41.81334.28YesNo089
45R:R:L203 R:R:L226 44.104515.22NoNo097
46R:R:L226 R:R:M200 87.85565.65NoYes078
47R:R:M200 R:R:T196 96.65613.01YesYes087
48R:R:I207 R:R:T204 41.70043.04YesNo086
49R:R:L226 R:R:T204 42.84054.42NoNo076
50R:R:F115 R:R:I105 15.68862.51YesNo097
51R:R:F115 R:R:S108 18.2537.93YesNo097
52R:R:F110 R:R:S108 20.83936.61YesNo087
53R:R:F115 R:R:F198 18.27495.36YesNo097
54R:R:I105 R:R:R119 10.46885.01NoNo079
55R:R:F115 R:R:H112 15.69963.39YesNo097
56R:R:H181 R:R:Q177 29.37022.47YesYes021
57L:L:?1 R:R:H181 29.69073.38YesYes102
58R:R:Q151 R:R:Q177 19.236515.36NoYes031
59R:R:I150 R:R:Q151 12.61062.74YesNo023
60R:R:L229 R:R:M200 10.43975.65NoYes078
61R:R:H210 R:R:R222 13.229910.16NoNo069
62R:R:F223 R:R:I207 10.5895.02NoYes068
63R:R:V265 R:R:Y266 15.51745.05NoYes144
64R:R:N67 R:R:W259 13.28453.39YesYes133
65R:R:W85 R:R:Y266 20.20547.72YesYes154
66R:R:V265 R:R:Y239 15.1243.79NoYes147
67R:R:I269 R:R:Y239 15.484610.88NoYes087
68R:R:H272 R:R:N96 19.673610.2YesYes197
69R:R:K254 R:R:W261 13.48499.28YesYes134
70R:R:Y14 R:R:Y266 13.153414.89YesYes144
71R:R:S63 R:R:W85 10.61813.71YesYes155
72R:R:F192 R:R:N96 20.71548.46YesYes187
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:S63 R:R:Y14 3.82 1 Yes Yes 5 4 1 2
R:R:N67 R:R:Y14 5.81 1 Yes Yes 3 4 2 2
R:R:E262 R:R:Y14 19.08 1 Yes Yes 3 4 1 2
R:R:Y14 R:R:Y266 14.89 1 Yes Yes 4 4 2 2
R:R:L59 R:R:W85 21.64 1 No Yes 5 5 2 1
R:R:L59 R:R:Y266 5.86 1 No Yes 5 4 2 2
R:R:A62 R:R:W85 3.89 0 No Yes 4 5 2 1
R:R:N67 R:R:S63 4.47 1 Yes Yes 3 5 2 1
R:R:S63 R:R:W85 3.71 1 Yes Yes 5 5 1 1
R:R:S63 R:R:Y266 11.45 1 Yes Yes 5 4 1 2
L:L:?1 R:R:S63 3.95 1 Yes Yes 0 5 0 1
L:L:?1 R:R:N66 5.42 1 Yes No 0 5 0 1
R:R:E262 R:R:N67 11.83 1 Yes Yes 3 3 1 2
R:R:N80 R:R:T82 4.39 0 No No 3 1 2 1
R:R:N89 R:R:W85 9.04 1 Yes Yes 8 5 2 1
R:R:W85 R:R:Y239 3.86 1 Yes Yes 5 7 1 2
R:R:I243 R:R:W85 3.52 1 Yes Yes 3 5 2 1
R:R:W85 R:R:Y266 7.72 1 Yes Yes 5 4 1 2
L:L:?1 R:R:W85 30.71 1 Yes Yes 0 5 0 1
R:R:E86 R:R:I90 8.2 1 Yes No 4 6 1 2
R:R:E86 R:R:I141 5.47 1 Yes No 4 5 1 2
R:R:E86 R:R:H181 4.92 1 Yes Yes 4 2 1 1
L:L:?1 R:R:E86 3.49 1 Yes Yes 0 4 0 1
R:R:N89 R:R:Y239 11.63 1 Yes Yes 8 7 2 2
R:R:I243 R:R:N89 7.08 1 Yes Yes 3 8 2 2
R:R:I141 R:R:S144 4.64 0 No No 5 3 2 2
R:R:H181 R:R:S144 6.97 1 Yes No 2 3 1 2
R:R:H181 R:R:I247 3.98 1 Yes No 2 4 1 1
L:L:?1 R:R:H181 3.38 1 Yes Yes 0 2 0 1
R:R:I247 R:R:T182 3.04 1 No No 4 4 1 2
R:R:I243 R:R:Y239 13.3 1 Yes Yes 3 7 2 2
L:L:?1 R:R:T246 6.79 1 Yes No 0 4 0 1
L:L:?1 R:R:I247 3.76 1 Yes No 0 4 0 1
R:R:F252 R:R:K254 3.72 1 No Yes 2 3 2 1
R:R:F252 R:R:W261 37.08 1 No Yes 2 4 2 2
R:R:K254 R:R:L258 4.23 1 Yes No 3 2 1 2
R:R:K254 R:R:W261 9.28 1 Yes Yes 3 4 1 2
R:R:E262 R:R:K254 5.4 1 Yes Yes 3 3 1 1
L:L:?1 R:R:K254 7.42 1 Yes Yes 0 3 0 1
R:R:E262 R:R:Y266 4.49 1 Yes Yes 3 4 1 2
L:L:?1 R:R:E262 6.97 1 Yes Yes 0 3 0 1
L:L:?1 R:R:T82 2.91 1 Yes No 0 1 0 1
R:R:H181 R:R:Q177 2.47 1 Yes Yes 2 1 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9KPD_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.04
Number of Linked Nodes 251
Number of Links 302
Number of Hubs 45
Number of Links mediated by Hubs 163
Number of Communities 4
Number of Nodes involved in Communities 58
Number of Links involved in Communities 97
Path Summary
Number Of Nodes in MetaPath 73
Number Of Links MetaPath 72
Number of Shortest Paths 64487
Length Of Smallest Path 3
Average Path Length 13.2515
Length of Longest Path 29
Minimum Path Strength 1.33
Average Path Strength 6.86789
Maximum Path Strength 31.065
Minimum Path Correlation 0.7
Average Path Correlation 0.93082
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.7619
Average % Of Corr. Nodes 46.1071
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 54.5561
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeSA0
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeSA0
NameSalicin
SynonymsD-salicin
Identifier
FormulaC13 H18 O7
Molecular Weight286.278
SMILES
PubChem439503
Formal Charge0
Total Atoms38
Total Chiral Atoms5
Total Bonds39
Total Aromatic Bonds6

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ9NYV7
Sequence
>9KPD_nogp_Chain_R
IPIQLTVFF MIIYVLESL TIIVQSSLI VAVLGREWL QVRRLMPVD 
MILISLGIS RFCLQWASM LNNFCSYFN LNYVLCNLT ITWEFFNIL 
TFWLNSLLT VFYCIKVSS FTHHIFLWL RWRILRLFP WILLGLMIT 
CVTIIPSAI GNYIQIQLL TENFHQYQF QAHTVALVI PFILFLAST 
IFLMASLTK QIQHHSTGH CNPSMKARF TALRSLAVL FIVFTSYFL 
TILITIIGT LFDKRCWLW VWEAFVYAF ILMHSTSLM LSSPTLKRC


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
9K6LT2SensoryTaste2TAS2R16Homo sapiensSA0-Gi2/β1/γ22.772025-04-02To be published
9K6L (No Gprot) T2SensoryTaste2TAS2R16Homo sapiensSA0-2.772025-04-02To be published
9KPDT2SensoryTaste2TAS2R16Homo sapiensSA0-chim(Gs-CtGt3)/β1/γ22.842025-04-02To be published
9KPD (No Gprot) T2SensoryTaste2TAS2R16Homo sapiensSA0-2.842025-04-02To be published
9KPET2SensoryTaste2TAS2R16Homo sapiensSA0-Gi1/β1/γ23.352025-04-02To be published
9KPE (No Gprot) T2SensoryTaste2TAS2R16Homo sapiensSA0-3.352025-04-02To be published
9KPFT2SensoryTaste2TAS2R16Homo sapiensSA0-Gi1/β1/γ23.152025-04-02To be published
9KPF (No Gprot) T2SensoryTaste2TAS2R16Homo sapiensSA0-3.152025-04-02To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9KPD_nogp.zip



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