Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:F10 7.635435
2R:R:Y14 9.002514
3R:R:E35 4.7925427
4R:R:W36 3.45406
5R:R:V45 3.87425
6R:R:D46 6.585629
7R:R:I48 6.48449
8R:R:R56 6.11409
9R:R:Q60 4.92333617
10R:R:S63 5.456515
11R:R:N67 7.7425413
12R:R:W85 9.454515
13R:R:E86 6.365414
14R:R:N89 5.086518
15R:R:F93 6.614516
16R:R:T100 5.045418
17R:R:F102 6.2775408
18R:R:F126 5.376547
19R:R:Q151 4.216563
20R:R:P188 7.32418
21R:R:F192 7.042518
22R:R:T196 4.5425417
23R:R:M200 3.2525408
24R:R:L203 4.035409
25R:R:R222 7.47489
26R:R:F236 8.288517
27R:R:T242 4.0375496
28R:R:W261 10.55514
29R:R:E262 8.456513
30R:R:V265 5.1404
31R:R:Y266 6.12286714
32R:R:H272 5.446509
33R:R:M277 5.2025409
34R:R:P281 2.995427
35R:R:T282 5.335428
36R:R:L283 4.305409
37L:L:?1 6.33751210
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:F10 R:R:V260 15.073513.11YesNo354
2R:R:V260 R:R:W257 13.76222.45NoNo043
3R:R:F10 R:R:F9 19.12218.57YesNo055
4R:R:F9 R:R:I13 21.752611.3NoNo057
5R:R:E17 R:R:I13 23.05594.1NoNo087
6R:R:E17 R:R:Y266 26.91842.24NoYes084
7R:R:E262 R:R:Y266 30.71353.37YesYes134
8R:R:L258 R:R:W259 10.383110.25NoNo023
9R:R:Q60 R:R:Y266 12.18566.76YesYes174
10R:R:S63 R:R:Y266 28.47928.9YesYes154
11R:R:I269 R:R:Y266 61.66073.63NoYes084
12R:R:I269 R:R:R56 61.64486.26NoYes089
13R:R:H272 R:R:R56 71.37033.39YesYes099
14R:R:H272 R:R:L276 1002.57YesNo099
15R:R:L276 R:R:L49 99.16814.15NoNo098
16R:R:I28 R:R:L49 31.88612.85NoNo098
17R:R:I28 R:R:M277 13.96432.92NoYes099
18R:R:M277 R:R:Q24 12.577712.23YesNo097
19R:R:Q24 R:R:T274 11.03282.83NoNo074
20R:R:I22 R:R:Q60 13.82175.49NoYes077
21R:R:I22 R:R:W61 11.07248.22NoNo073
22R:R:I28 R:R:L32 21.21782.85NoNo098
23R:R:L49 R:R:S280 66.46993NoNo089
24R:R:D46 R:R:L32 20.19576.79YesNo098
25R:R:D46 R:R:P281 18.08033.22YesYes297
26R:R:P281 R:R:S280 64.14453.56YesNo079
27R:R:D46 R:R:L42 23.33328.14YesNo097
28R:R:E35 R:R:L42 10.47822.65YesNo077
29R:R:L42 R:R:W36 10.486110.25NoYes076
30R:R:P281 R:R:V45 44.00823.53YesYes275
31R:R:F102 R:R:V45 42.99815.24YesYes085
32R:R:F102 R:R:I48 10.89412.51YesYes089
33R:R:N89 R:R:W85 41.88097.91YesYes185
34R:R:S55 R:R:T92 13.38993.2NoNo088
35L:L:?1 R:R:S63 26.86294.94YesYes105
36L:L:?1 R:R:E86 13.51275.23YesYes104
37L:L:?1 R:R:E262 30.52338.72YesYes103
38R:R:L81 R:R:N66 10.08995.49NoNo125
39L:L:?1 R:R:N66 24.22062.71YesNo105
40R:R:L65 R:R:N66 12.30842.75NoNo145
41R:R:C79 R:R:L65 10.37521.59NoNo034
42R:R:F93 R:R:N89 46.0886.04YesYes168
43R:R:F236 R:R:H272 48.44127.92YesYes079
44R:R:F192 R:R:F236 34.69487.5YesYes187
45R:R:F192 R:R:T196 30.26583.89YesYes187
46R:R:F102 R:R:K106 24.83068.69YesNo089
47R:R:F115 R:R:I105 19.7565.02NoNo097
48R:R:I105 R:R:R119 21.13855.01NoNo079
49R:R:K106 R:R:R119 23.46392.48NoNo099
50R:R:F115 R:R:H112 12.92643.39NoNo097
51R:R:H112 R:R:I114 10.03057.95NoNo574
52R:R:Q151 R:R:Q177 10.43463.84YesNo031
53R:R:N148 R:R:Q151 22.15272.64NoYes633
54R:R:I83 R:R:N148 39.94371.42NoNo043
55R:R:I83 R:R:S144 41.73041.55NoNo043
56R:R:H181 R:R:S144 41.98796.97NoNo023
57L:L:?1 R:R:H181 43.29524.23YesNo102
58R:R:I152 R:R:N148 16.05594.25NoNo623
59R:R:I152 R:R:T156 14.34461.52NoNo021
60R:R:Q153 R:R:T156 12.28462.83NoNo031
61R:R:Q153 R:R:Y149 10.21677.89NoNo033
62R:R:M200 R:R:T196 25.71011.51YesYes087
63R:R:L226 R:R:M200 21.45944.24NoYes078
64R:R:L203 R:R:L226 19.41132.77YesNo097
65R:R:L203 R:R:R222 16.21847.29YesYes099
66L:L:?1 R:R:W85 36.390321.72YesYes105
67R:R:F236 R:R:F93 41.40959.65YesYes176
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:S63 R:R:Y14 2.54 1 Yes Yes 5 4 1 2
R:R:N67 R:R:Y14 10.47 1 Yes Yes 3 4 1 2
R:R:E262 R:R:Y14 15.71 1 Yes Yes 3 4 1 2
R:R:Y14 R:R:Y266 12.91 1 Yes Yes 4 4 2 2
R:R:L59 R:R:W85 6.83 0 No Yes 5 5 2 1
R:R:N67 R:R:S63 5.96 1 Yes Yes 3 5 1 1
R:R:S63 R:R:W85 4.94 1 Yes Yes 5 5 1 1
R:R:S63 R:R:Y266 8.9 1 Yes Yes 5 4 1 2
L:L:?1 R:R:S63 4.94 1 Yes Yes 0 5 0 1
R:R:L65 R:R:N66 2.75 1 No No 4 5 2 1
R:R:L65 R:R:L81 5.54 1 No No 4 2 2 2
R:R:L81 R:R:N66 5.49 1 No No 2 5 2 1
L:L:?1 R:R:N66 2.71 1 Yes No 0 5 0 1
R:R:E262 R:R:N67 11.83 1 Yes Yes 3 3 1 1
L:L:?1 R:R:N67 2.71 1 Yes Yes 0 3 0 1
L:L:?1 R:R:T82 2.91 1 Yes No 0 1 0 1
R:R:N89 R:R:W85 7.91 1 Yes Yes 8 5 2 1
R:R:I243 R:R:W85 5.87 0 No Yes 3 5 2 1
L:L:?1 R:R:W85 21.72 1 Yes Yes 0 5 0 1
R:R:E86 R:R:I90 2.73 1 Yes No 4 6 1 2
R:R:E86 R:R:I141 2.73 1 Yes No 4 5 1 2
R:R:E86 R:R:H181 14.77 1 Yes No 4 2 1 1
L:L:?1 R:R:E86 5.23 1 Yes Yes 0 4 0 1
R:R:I141 R:R:S144 3.1 0 No No 5 3 2 2
R:R:H181 R:R:S144 6.97 1 No No 2 3 1 2
R:R:F178 R:R:I247 2.51 0 No No 4 4 2 1
L:L:?1 R:R:H181 4.23 1 Yes No 0 2 0 1
R:R:I245 R:R:W261 5.87 0 No Yes 5 4 2 1
R:R:T246 R:R:W261 10.92 1 No Yes 4 4 1 1
L:L:?1 R:R:T246 7.76 1 Yes No 0 4 0 1
L:L:?1 R:R:I247 5.63 1 Yes No 0 4 0 1
R:R:F252 R:R:K254 7.44 0 No No 2 3 2 1
R:R:F252 R:R:W261 28.06 0 No Yes 2 4 2 1
R:R:K254 R:R:L258 4.23 0 No No 3 2 1 2
L:L:?1 R:R:K254 6.49 1 Yes No 0 3 0 1
R:R:E262 R:R:L258 2.65 1 Yes No 3 2 1 2
R:R:V265 R:R:W261 4.9 0 Yes Yes 4 4 2 1
L:L:?1 R:R:W261 3 1 Yes Yes 0 4 0 1
R:R:E262 R:R:Y266 3.37 1 Yes Yes 3 4 1 2
L:L:?1 R:R:E262 8.72 1 Yes Yes 0 3 0 1
R:R:V265 R:R:Y266 5.05 0 Yes Yes 4 4 2 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9KPF_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.48
Number of Linked Nodes 253
Number of Links 295
Number of Hubs 37
Number of Links mediated by Hubs 135
Number of Communities 9
Number of Nodes involved in Communities 57
Number of Links involved in Communities 76
Path Summary
Number Of Nodes in MetaPath 68
Number Of Links MetaPath 67
Number of Shortest Paths 52367
Length Of Smallest Path 3
Average Path Length 13.6498
Length of Longest Path 34
Minimum Path Strength 1.07
Average Path Strength 5.19886
Maximum Path Strength 18.855
Minimum Path Correlation 0.7
Average Path Correlation 0.931226
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.33333
Average % Of Corr. Nodes 46.0792
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 43.3175
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeSA0
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeSA0
NameSalicin
SynonymsD-salicin
Identifier
FormulaC13 H18 O7
Molecular Weight286.278
SMILES
PubChem439503
Formal Charge0
Total Atoms38
Total Chiral Atoms5
Total Bonds39
Total Aromatic Bonds6

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ9NYV7
Sequence
>9KPF_nogp_Chain_R
IPIQLTVFF MIIYVLESL TIIVQSSLI VAVLGREWL QVRRLMPVD 
MILISLGIS RFCLQWASM LNNFCSYFN LNYVLCNLT ITWEFFNIL 
TFWLNSLLT VFYCIKVSS FTHHIFLWL RWRILRLFP WILLGLMIT 
CVTIIPSAI GNYIQIQLL TENFHQYQF QAHTVALVI PFILFLAST 
IFLMASLTK QIQHHSTGH CNPSMKARF TALRSLAVL FIVFTSYFL 
TILITIIGT LFDKRCWLW VWEAFVYAF ILMHSTSLM LSSPTLKRI 
LC


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
9K6LT2SensoryTaste2TAS2R16Homo sapiensSA0-Gi2/β1/γ22.772025-04-02To be published
9K6L (No Gprot) T2SensoryTaste2TAS2R16Homo sapiensSA0-2.772025-04-02To be published
9KPDT2SensoryTaste2TAS2R16Homo sapiensSA0-chim(Gs-CtGt3)/β1/γ22.842025-04-02To be published
9KPD (No Gprot) T2SensoryTaste2TAS2R16Homo sapiensSA0-2.842025-04-02To be published
9KPET2SensoryTaste2TAS2R16Homo sapiensSA0-Gi1/β1/γ23.352025-04-02To be published
9KPE (No Gprot) T2SensoryTaste2TAS2R16Homo sapiensSA0-3.352025-04-02To be published
9KPFT2SensoryTaste2TAS2R16Homo sapiensSA0-Gi1/β1/γ23.152025-04-02To be published
9KPF (No Gprot) T2SensoryTaste2TAS2R16Homo sapiensSA0-3.152025-04-02To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9KPF_nogp.zip



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