Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:Y21 7.61455
2R:R:Y26 5.845608
3R:R:Y44 8.62857737
4R:R:M48 5.73536
5R:R:W51 7.595436
6R:R:Y57 6.6025468
7R:R:F59 6.978536
8R:R:D65 8.8475429
9R:R:F68 6.45333627
10R:R:M74 9.825447
11R:R:I76 2.815407
12R:R:W84 7.26429748
13R:R:Y96 5.7425405
14R:R:N101 6.5528
15R:R:Y103 6.915417
16R:R:T104 6.155427
17R:R:F108 9.065427
18R:R:Y117 9.2725408
19R:R:M120 6.955408
20R:R:F122 8.295486
21R:R:R125 10.7575404
22R:R:Q130 6.6775486
23R:R:W143 5.6875429
24R:R:Y171 8.766513
25R:R:Y183 9.328516
26R:R:L187 6.86415
27R:R:F192 9.162518
28R:R:F241 8.532518
29R:R:Y244 6.82616
30R:R:H245 9.99833618
31R:R:R248 6.93143716
32R:R:R251 7.8525404
33R:R:W259 7.555401
34R:R:Y272 8.57833615
35R:R:N282 6.3525419
36R:R:S283 5.42428
37R:R:N286 9.795409
38R:R:F289 7.64407
39R:R:Y290 11.932539
40R:R:F297 6.58429738
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:C270 R:R:W10 11.34915.22NoNo013
2R:R:C270 R:R:L17 14.54963.17NoNo014
3R:R:L17 R:R:Y21 16.14273.52NoYes045
4R:R:P277 R:R:Y21 19.22936.95NoYes555
5R:R:P277 R:R:Y26 25.60196.95NoYes058
6R:R:L22 R:R:Y26 14.79428.21NoYes068
7R:R:I273 R:R:L22 10.40414.28NoNo046
8R:R:R251 R:R:Y272 28.66717.2YesYes045
9R:R:L72 R:R:Y26 23.6174.69NoYes078
10R:R:F280 R:R:Y26 23.63839.28NoYes078
11R:R:F30 R:R:L72 10.01233.65NoNo077
12R:R:F68 R:R:L72 30.71138.53YesNo077
13R:R:F68 R:R:N101 38.399310.87YesYes278
14R:R:D65 R:R:N101 32.9936.73YesYes298
15R:R:D65 R:R:N37 74.431412.12YesNo099
16R:R:F280 R:R:F68 22.41085.36NoYes277
17R:R:F68 R:R:S283 31.91755.28YesYes278
18R:R:D65 R:R:S283 32.38764.42YesYes298
19R:R:N37 R:R:S62 1004.47NoNo098
20R:R:N37 R:R:P287 27.76258.15NoNo099
21R:R:D65 R:R:N286 44.964112.12YesYes099
22R:R:N286 R:R:P287 27.99046.52YesNo099
23R:R:S62 R:R:Y290 98.88176.36NoYes089
24R:R:F297 R:R:Y290 22.18537.22YesYes389
25R:R:Y290 R:R:Y44 73.111312.91YesYes397
26R:R:N55 R:R:Y44 60.969211.63NoYes387
27R:R:N52 R:R:N55 60.439713.62NoNo078
28R:R:N52 R:R:R125 53.779914.46NoYes074
29R:R:I112 R:R:Y57 15.58244.84NoYes098
30R:R:I112 R:R:L229 16.85035.71NoNo098
31R:R:F289 R:R:L229 23.11844.87YesNo078
32R:R:F289 R:R:L109 31.694315.83YesNo078
33R:R:L109 R:R:L61 34.10184.15NoNo089
34R:R:L61 R:R:N286 35.298413.73NoYes099
35R:R:N101 R:R:S64 10.02665.96YesNo288
36R:R:F68 R:R:T71 21.73652.59YesNo076
37R:R:N94 R:R:T71 20.694213.16NoNo056
38R:R:M74 R:R:N94 19.64727.01YesNo075
39R:R:M74 R:R:W84 10.98114.65YesYes478
40R:R:H99 R:R:L98 14.597.71NoNo057
41R:R:H99 R:R:M153 11.201913.13NoNo053
42R:R:N101 R:R:S105 10.25934.47YesNo089
43R:R:N282 R:R:S105 10.16678.94YesNo099
44R:R:F241 R:R:N282 61.23044.83YesYes189
45R:R:Y244 R:R:Y272 22.35395.96YesYes165
46R:R:L102 R:R:Y244 16.55824.69NoYes076
47R:R:R248 R:R:Y272 14.3818.23YesYes165
48R:R:H245 R:R:Y244 17.902110.89YesYes186
49R:R:H245 R:R:R248 17.3565.64YesYes186
50R:R:Q130 R:R:R125 48.94349.35YesYes064
51R:R:F122 R:R:Q130 44.95.86YesYes866
52R:R:F122 R:R:K121 39.619611.17YesNo068
53R:R:K121 R:R:Y117 21.302114.33NoYes088
54R:R:F209 R:R:K121 17.04977.44NoNo048
55R:R:F209 R:R:M120 14.24818.71NoYes048
56R:R:L210 R:R:M120 11.69815.65NoYes088
57R:R:R251 R:R:R255 14.4575.33YesNo043
58R:R:P177 R:R:R255 12.405610.09NoNo013
59R:R:L210 R:R:L227 10.25214.15NoNo086
60R:R:T275 R:R:Y244 15.47793.75NoYes076
61R:R:M247 R:R:T275 13.48126.02NoNo057
62R:R:M247 R:R:V250 10.51813.04NoNo055
63R:R:F241 R:R:L102 16.96668.53YesNo087
64R:R:N282 R:R:N286 55.34936.81YesYes099
65R:R:F241 R:R:H245 38.90266.79YesYes188
66R:R:F68 R:R:L98 13.31976.09YesNo277
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 6IBB
Class A
SubFamily Alicarboxylic acid
Type Succinate
SubType Succinate
Species Rattus norvegicus
Ligand -
Other Ligand(s) -
Protein Partners -
PDB Resolution 2.12
Date 2019-08-14
D.O.I. 10.1038/s41586-019-1663-8
Net Summary
Imin 4.14
Number of Linked Nodes 274
Number of Links 311
Number of Hubs 40
Number of Links mediated by Hubs 150
Number of Communities 8
Number of Nodes involved in Communities 53
Number of Links involved in Communities 74
Path Summary
Number Of Nodes in MetaPath 67
Number Of Links MetaPath 66
Number of Shortest Paths 78273
Length Of Smallest Path 3
Average Path Length 14.8158
Length of Longest Path 32
Minimum Path Strength 1.435
Average Path Strength 7.60774
Maximum Path Strength 17.18
Minimum Path Correlation 0.7
Average Path Correlation 0.941104
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 3.84615
Average % Of Corr. Nodes 55.0503
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 46.247
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier
SCOP2Family Identifier
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ6IYF9
Sequence
>6IBB_Chain_R
SCENWLALE NILKKYYLS AFYGIEFIV GMLGNFTVV FGYLFCMKN 
WNSSNVYLF NLSISDLAF LCTLPMLIR SYATGNWTY GDVLCISNR 
YVLHANLYT SILFLTFIS IDRYLLMKF PFREHILQK KEFAILISL 
AVWVLVTLE VLPMLTFIT SSCVDYASS GNPKYSLIY SLCLTLLGF 
LIPLSVMCF FYYKMVVFL KKRNKPLRL VVLAVVIFS VLFTPYHIM 
RNVRIASRL DSWPQGCSQ KAIKCLYIL TRPLAFLNS AVNPIFYFL 
VGDHFRDML FSKLRQYFK SLTSFRL


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6IBBAAlicarboxylic acidSuccinateSuccinateRattus norvegicus---2.122019-08-1410.1038/s41586-019-1663-8
6RNKAAlicarboxylic acidSuccinateSuccinateRattus norvegicusNF-56-EJ40--1.942019-08-1410.1038/s41586-019-1663-8
6Z10AAlicarboxylic acidSuccinateSuccinateRattus norvegicusPubChem 154585554--2.272020-09-1610.1021/acs.jmedchem.0c01020




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Download 6IBB.zip



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