Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 8.86830
2R:R:Y30 6.19667638
3R:R:E33 5.7875407
4R:R:Y48 6.566557
5R:R:N56 7.4975407
6R:R:Y61 4.9075467
7R:R:F63 6.078556
8R:R:S68 4.3325428
9R:R:F72 7.3125407
10R:R:W88 7.845688
11R:R:Y100 3.83406
12R:R:Y107 4.6025417
13R:R:F112 7.1575428
14R:R:Y121 7.858508
15R:R:N184 6.8525403
16R:R:Y187 5.42405
17R:R:F196 7.296518
18R:R:M203 4.71418
19R:R:Y207 5.64667619
20R:R:L227 3.62406
21R:R:F241 5.262519
22R:R:F245 8.204518
23R:R:Y248 6.7475417
24R:R:H249 8.304518
25R:R:R252 6.6516
26R:R:Y277 6.36667615
27R:R:F294 4.132507
28R:R:F302 3.4425408
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:Y30 38.80925.2YesYes308
2R:R:F285 R:R:Y30 27.58317.22NoYes078
3R:R:E33 R:R:F285 28.38935.83YesNo077
4R:R:E33 R:R:F29 17.12610.49YesNo075
5R:R:F29 R:R:Y25 14.51179.28NoNo454
6R:R:V279 R:R:Y25 13.25016.31NoNo054
7R:R:L21 R:R:V279 11.93791.49NoNo045
8R:R:L21 R:R:S275 10.62241.5NoNo041
9L:L:?1 R:R:R281 84.260422.65YesNo006
10R:R:R281 R:R:Y277 85.82569.26NoYes065
11R:R:R255 R:R:Y277 10.75737.2NoYes055
12L:L:?1 R:R:L102 41.30883.69YesNo007
13R:R:F72 R:R:L102 23.87596.09YesNo077
14R:R:F72 R:R:L73 11.77946.09YesNo076
15R:R:D69 R:R:L73 10.49764.07NoNo096
16R:R:D69 R:R:N41 18.39114.81NoNo099
17R:R:N41 R:R:P292 10.54824.89NoNo099
18R:R:F72 R:R:S288 11.77945.28YesNo079
19R:R:D69 R:R:S288 10.497610.31NoNo099
20R:R:Y248 R:R:Y277 43.44756.95YesYes175
21R:R:H249 R:R:Y248 43.90625.44YesYes187
22R:R:F196 R:R:H249 10020.36YesYes188
23R:R:F196 R:R:F241 90.89224.29YesYes189
24R:R:F241 R:R:M203 90.43683.73YesYes198
25R:R:M203 R:R:Y207 89.95455.99YesYes189
26R:R:R120 R:R:Y207 86.13596.17NoYes099
27R:R:I116 R:R:R120 79.87523.76NoNo099
28R:R:I116 R:R:L62 79.19725.71NoNo098
29R:R:F296 R:R:L62 78.49899.74NoNo068
30R:R:R252 R:R:Y277 53.2947.2YesYes165
31R:R:H249 R:R:R252 43.70054.51YesYes186
32R:R:F296 R:R:Y48 77.13615.16NoYes067
33R:R:F302 R:R:Y48 12.02565.16YesYes087
34R:R:N59 R:R:Y48 63.518310.47NoYes077
35R:R:N56 R:R:N59 62.70879.54YesNo077
36R:R:N56 R:R:S58 30.76074.47YesNo078
37R:R:N56 R:R:R129 36.022913.26YesNo075
38R:R:D119 R:R:S58 29.69135.89NoNo088
39R:R:D119 R:R:Y61 27.55274.6NoYes087
40R:R:F115 R:R:Y61 16.38396.19NoYes667
41R:R:F115 R:R:I146 15.46646.28NoNo067
42R:R:F112 R:R:I146 13.24348.79YesNo087
43R:R:R120 R:R:Y295 10.63596.17NoNo099
44R:R:L102 R:R:T75 20.99174.42NoNo076
45R:R:N98 R:R:T75 19.73017.31NoNo046
46R:R:M78 R:R:N98 18.46187.01NoNo074
47R:R:L94 R:R:M78 17.18672.83NoNo067
48R:R:L94 R:R:W88 14.61633.42NoYes068
49L:L:?1 R:R:R99 10.008414.02YesNo006
50R:R:L191 R:R:Y107 21.42017.03NoYes057
51R:R:Q134 R:R:R129 17.25424.67NoNo075
52R:R:L122 R:R:Q134 12.66665.32NoNo057
53R:R:L122 R:R:Y121 11.59723.52NoYes058
54R:R:I123 R:R:R129 18.16167.52NoNo085
55R:R:I123 R:R:I124 17.09231.47NoNo088
56R:R:L191 R:R:Y187 20.7594.69NoYes055
57R:R:I157 R:R:Y187 11.02046.04NoYes045
58R:R:F213 R:R:I124 15.36186.28NoNo058
59R:R:F213 R:R:L214 14.3062.44NoNo057
60R:R:L214 R:R:P230 13.13543.28NoNo077
61R:R:L227 R:R:P230 10.88893.28YesNo067
62R:R:H249 R:R:Y107 12.92634.36YesYes187
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:Y30 5.2 3 Yes Yes 0 8 0 1
L:L:?1 R:R:L79 6.14 3 Yes No 0 6 0 1
L:L:?1 R:R:Y83 6.24 3 Yes No 0 5 0 1
L:L:?1 R:R:R99 14.02 3 Yes No 0 6 0 1
L:L:?1 R:R:L102 3.69 3 Yes No 0 7 0 1
L:L:?1 R:R:H103 5.71 3 Yes No 0 5 0 1
L:L:?1 R:R:D174 7.23 3 Yes No 0 5 0 1
L:L:?1 R:R:R281 22.65 3 Yes No 0 6 0 1
R:R:L26 R:R:Y30 5.86 0 No Yes 6 8 2 1
R:R:L76 R:R:Y30 7.03 0 No Yes 8 8 2 1
R:R:L79 R:R:Y30 7.03 3 No Yes 6 8 1 1
R:R:I80 R:R:Y30 4.84 0 No Yes 6 8 2 1
R:R:F285 R:R:Y30 7.22 0 No Yes 7 8 2 1
R:R:F72 R:R:L102 6.09 0 Yes No 7 7 2 1
R:R:F285 R:R:F72 11.79 0 No Yes 7 7 2 2
R:R:L102 R:R:T75 4.42 0 No No 7 6 1 2
R:R:L79 R:R:Y83 5.86 3 No No 6 5 1 1
R:R:I161 R:R:R99 3.76 0 No No 4 6 2 1
R:R:D174 R:R:S177 5.89 0 No No 5 4 1 2
R:R:R281 R:R:Y277 9.26 0 No Yes 6 5 1 2
R:R:I278 R:R:R281 3.76 0 No No 4 6 2 1
R:R:D174 R:R:N173 1.35 0 No No 5 4 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8JPN_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.65
Number of Linked Nodes 277
Number of Links 293
Number of Hubs 28
Number of Links mediated by Hubs 117
Number of Communities 8
Number of Nodes involved in Communities 37
Number of Links involved in Communities 44
Path Summary
Number Of Nodes in MetaPath 63
Number Of Links MetaPath 62
Number of Shortest Paths 49018
Length Of Smallest Path 3
Average Path Length 17.1719
Length of Longest Path 40
Minimum Path Strength 1.21
Average Path Strength 6.96577
Maximum Path Strength 18.335
Minimum Path Correlation 0.7
Average Path Correlation 0.930194
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 2.85714
Average % Of Corr. Nodes 41.57
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 41.4989
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeU9S
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeU9S
Name(2R,3S)-oxirane-2,3-dicarboxylic acid
Synonymscis-2,3-epoxysuccinic acid
Identifier
FormulaC4 H4 O5
Molecular Weight132.072
SMILES
PubChem2734802
Formal Charge0
Total Atoms13
Total Chiral Atoms2
Total Bonds13
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ9BXA5
Sequence
>8JPN_nogp_Chain_R
TCKNWLAAE AALEKYYLS IFYGIEFVV GVLGNTIVV FGYLFCLKN 
WNSSNIYLF NLSISDLAF LCTLPMLIR SYANGNWIY GDVLCISNR 
YVLHANLYT SILFLTFIS IDRYLIIKY PFREHLLQK KEFAILISL 
AIWVLVTLE LLPILPLIN PTCNDYASS GDPNYNLIY SMCLTLLGF 
LIPLFVMCF FYYKIALFL KQRNRQLAT ALPLEKPLN LVIMAVVIF 
SVLFTPYHV MRNVRIASR LGSWKQYQC TQVVINSFY IVTRPLAFL 
NSVINPVFY FLLGDHFRE MLMNKLRH


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6Z10AAlicarboxylic acidSuccinateSuccinateRattus norvegicusPubChem 154585554--2.272020-09-16doi.org/10.1021/acs.jmedchem.0c01020
8JPNAAlicarboxylic acidSuccinateSuccinateHomo sapiensCis-Epoxysuccinic acid-Gi1/β1/γ12.92024-05-22doi.org/10.1038/s41422-024-00968-7
8JPN (No Gprot) AAlicarboxylic acidSuccinateSuccinateHomo sapiensCis-Epoxysuccinic acid-2.92024-05-22doi.org/10.1038/s41422-024-00968-7
8JPPAAlicarboxylic acidSuccinateSuccinateHomo sapiensSuccinic acid-chim(Gs-CtGq)/β1/γ13.22024-05-22doi.org/10.1038/s41422-024-00968-7
8JPP (No Gprot) AAlicarboxylic acidSuccinateSuccinateHomo sapiensSuccinic acid-3.22024-05-22doi.org/10.1038/s41422-024-00968-7
8YKWAAlicarboxylic acidSuccinateSuccinateHomo sapiensSuccinic acid-Gi1/β1/γ12.752024-05-29doi.org/10.1038/s41422-024-00984-7
8YKW (No Gprot) AAlicarboxylic acidSuccinateSuccinateHomo sapiensSuccinic acid-2.752024-05-29doi.org/10.1038/s41422-024-00984-7
8YKXAAlicarboxylic acidSuccinateSuccinateHomo sapiensMaleic acid-Gi1/β1/γ12.692024-05-29doi.org/10.1038/s41422-024-00984-7
8YKX (No Gprot) AAlicarboxylic acidSuccinateSuccinateHomo sapiensMaleic acid-2.692024-05-29doi.org/10.1038/s41422-024-00984-7
6IBBAAlicarboxylic acidSuccinateSuccinateRattus norvegicus---2.122019-08-14doi.org/10.1038/s41586-019-1663-8
6RNKAAlicarboxylic acidSuccinateSuccinateRattus norvegicusNF-56-EJ40--1.942019-08-14doi.org/10.1038/s41586-019-1663-8
8WOGAAlicarboxylic acidSuccinateSuccinateHomo sapiensSuccinic acid-Gi1/β1/γ22.972024-09-11doi.org/10.1016/j.celrep.2024.114381
8WOG (No Gprot) AAlicarboxylic acidSuccinateSuccinateHomo sapiensSuccinic acid-2.972024-09-11doi.org/10.1016/j.celrep.2024.114381
8WP1AAlicarboxylic acidSuccinateSuccinateHomo sapiensCis-Epoxysuccinic acid-Gi1/β1/γ23.152024-09-11doi.org/10.1016/j.celrep.2024.114381
8WP1 (No Gprot) AAlicarboxylic acidSuccinateSuccinateHomo sapiensCis-Epoxysuccinic acid-3.152024-09-11doi.org/10.1016/j.celrep.2024.114381
8YKVAAlicarboxylic acidSuccinateSuccinateHomo sapiensPubChem 137553168-Gi1/β1/γ22.482024-05-29doi.org/10.1038/s41422-024-00984-7
8YKV (No Gprot) AAlicarboxylic acidSuccinateSuccinateHomo sapiensPubChem 137553168-2.482024-05-29doi.org/10.1038/s41422-024-00984-7




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Download 8JPN_nogp.zip



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