Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:H6 6.965430
2L:L:?7 8.79445910
3L:L:R8 9.76710
4L:L:W9 6.89610
5R:R:I40 4.83536
6R:R:D42 6.4433
7R:R:F45 6.0625436
8R:R:S52 4.4975458
9R:R:E55 4.8175408
10R:R:N56 5.515409
11R:R:N66 11.365478
12R:R:L69 7.505408
13R:R:P72 4.795407
14R:R:Y74 7.5475408
15R:R:L80 5.955419
16R:R:D84 7.1925419
17R:R:T95 5.91435
18R:R:N118 5.1525414
19R:R:D121 10.118515
20R:R:M128 5.405415
21R:R:L132 5.37417
22R:R:F134 8.768548
23R:R:L135 5.4025418
24R:R:D141 6.5575489
25R:R:F147 13.985496
26R:R:Y152 8.565488
27R:R:V156 4.7075487
28R:R:W169 8.4775449
29R:R:F179 4.77505
30R:R:I180 5.4575415
31R:R:F196 7.44714717
32R:R:Y207 6.16708
33R:R:F250 5.772518
34R:R:W254 8.28833617
35R:R:F257 6.736505
36R:R:H260 10.5225424
37R:R:L261 5.695415
38R:R:V265 4.9275404
39R:R:H270 8.3675424
40R:R:C273 5.985424
41R:R:F277 7.846523
42R:R:F280 10.69404
43R:R:L282 5.825423
44R:R:F283 6.595425
45R:R:D294 5.85419
46R:R:Y298 6.74667619
47R:R:F300 4.856505
48R:R:T308 7.335408
49R:R:L309 6.03466
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?4 R:R:D117 16.42128.91NoNo006
2L:L:?7 L:L:R8 25.567312.35YesYes100
3L:L:?7 R:R:F257 18.65336.19YesYes005
4R:R:F257 R:R:F280 32.31924.29YesYes054
5R:R:F280 R:R:H260 43.197216.97YesYes044
6R:R:F283 R:R:H260 23.78446.79YesYes254
7R:R:F283 R:R:L282 33.81036.09YesYes253
8R:R:L282 R:R:V38 29.72128.94YesNo035
9R:R:I40 R:R:V38 28.30423.07YesNo065
10R:R:F45 R:R:I40 21.01515.02YesYes366
11L:L:?7 R:R:D121 20.848414.95YesYes105
12L:L:?7 R:R:L284 14.43464.69YesNo004
13R:R:F280 R:R:L284 13.554710.96YesNo044
14R:R:F45 R:R:T95 13.83255.19YesYes365
15L:L:?7 R:R:M128 54.72358.39YesYes105
16L:L:R8 R:R:I180 12.47118.77YesYes105
17R:R:D121 R:R:I180 12.12374.2YesYes155
18L:L:W9 R:R:L192 10.56774.56YesNo105
19R:R:F277 R:R:H260 25.99339.05YesYes234
20R:R:M128 R:R:W254 54.7565.82YesYes157
21R:R:S131 R:R:W254 73.76124.94NoYes197
22R:R:D84 R:R:S131 71.38095.89YesNo199
23R:R:D84 R:R:N56 1006.73YesYes099
24R:R:N56 R:R:P295 91.63666.52YesNo099
25R:R:E55 R:R:P295 90.74747.86YesNo089
26R:R:E55 R:R:I292 12.40624.1YesNo085
27R:R:E55 R:R:F300 81.42544.66YesYes085
28R:R:F300 R:R:L305 66.91676.09YesNo058
29R:R:L305 R:R:L69 59.15534.15NoYes088
30R:R:F300 R:R:L309 11.44768.53YesYes056
31R:R:T308 R:R:T62 13.23524.71YesNo088
32R:R:L69 R:R:Y74 49.263710.55YesYes088
33R:R:M73 R:R:Y74 45.44328.38NoYes088
34R:R:D141 R:R:M73 44.15585.54YesNo098
35R:R:D141 R:R:V156 20.34824.38YesYes897
36R:R:P72 R:R:V156 12.31363.53YesYes077
37R:R:F179 R:R:L192 18.11616.09YesNo055
38R:R:F250 R:R:W254 23.04344.01YesYes187
39R:R:F250 R:R:L135 25.10427.31YesYes188
40R:R:E94 R:R:I120 20.38995.47NoNo045
41R:R:I120 R:R:L116 17.45867.14NoNo053
42R:R:L116 R:R:V97 15.91184.47NoNo034
43R:R:L101 R:R:V97 14.36972.98NoNo034
44R:R:I180 R:R:V122 21.92744.61YesNo055
45R:R:F257 R:R:I287 21.14015.02YesNo057
46R:R:F196 R:R:W254 25.57194.01YesYes177
47R:R:F196 R:R:L132 14.54113.65YesYes177
48R:R:F195 R:R:L132 30.87438.53NoYes147
49R:R:F257 R:R:F258 11.37359.65YesNo055
50R:R:F196 R:R:F258 11.544927.86YesNo075
51R:R:F250 R:R:L132 22.36733.65YesYes187
52R:R:C133 R:R:F195 28.00785.59NoNo044
53R:R:C133 R:R:I168 25.09036.55NoNo046
54R:R:L135 R:R:Y298 10.36864.69YesYes189
55R:R:D294 R:R:Y298 15.69424.6YesYes199
56R:R:F250 R:R:M203 15.27287.46YesNo088
57R:R:M203 R:R:Y207 13.16577.18NoYes088
58R:R:D141 R:R:Y152 18.644110.34YesYes898
59R:R:S145 R:R:Y152 16.5378.9NoYes098
60R:R:I146 R:R:S145 15.05513.1NoNo089
61R:R:F147 R:R:I146 13.56411.3YesNo068
62R:R:T177 R:R:V122 19.21833.17NoNo045
63R:R:L178 R:R:T177 16.51.47NoNo054
64R:R:L178 R:R:Y182 11.03553.52NoNo054
65R:R:C273 R:R:F277 18.79694.19YesYes243
66R:R:F196 R:R:G255 22.41834.52YesNo075
67R:R:L246 R:R:Y298 11.4435.86NoYes089
68R:R:G255 R:R:P256 21.26054.06NoNo059
69R:R:F283 R:R:P256 20.77898.67YesNo059
70L:L:?7 L:L:W9 13.96226.76YesYes100
71R:R:F257 R:R:L261 15.28678.53YesYes055
72R:R:F134 R:R:I168 22.191412.56YesNo086
73R:R:F196 R:R:F250 10.57246.43YesYes178
74L:L:?7 R:R:E94 20.18157.86YesNo104
75R:R:I287 R:R:W254 20.649311.74NoYes177
76R:R:D84 R:R:L80 11.25319.5YesYes199
77R:R:D294 R:R:D84 18.29676.65YesYes199
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?4 R:R:D117 8.91 0 No No 0 6 0 1
L:L:H6 R:R:D42 7.56 3 Yes Yes 0 3 0 1
L:L:H6 R:R:F45 6.79 3 Yes Yes 0 6 0 1
L:L:H6 R:R:T95 8.21 3 Yes Yes 0 5 0 1
L:L:H6 R:R:I98 5.3 3 Yes No 0 3 0 1
L:L:?7 R:R:E94 7.86 1 Yes No 0 4 0 1
L:L:?7 R:R:D121 14.95 1 Yes Yes 0 5 0 1
L:L:?7 R:R:T124 11.24 1 Yes No 0 5 0 1
L:L:?7 R:R:C125 6.72 1 Yes No 0 4 0 1
L:L:?7 R:R:M128 8.39 1 Yes Yes 0 5 0 1
L:L:?7 R:R:F257 6.19 1 Yes Yes 0 5 0 1
L:L:?7 R:R:L284 4.69 1 Yes No 0 4 0 1
L:L:R8 R:R:D117 7.15 1 Yes No 0 6 0 1
L:L:R8 R:R:N118 8.44 1 Yes Yes 0 4 0 1
L:L:R8 R:R:D121 14.29 1 Yes Yes 0 5 0 1
L:L:R8 R:R:I180 8.77 1 Yes Yes 0 5 0 1
L:L:R8 R:R:Y183 11.32 1 Yes No 0 3 0 1
L:L:W9 R:R:Y183 5.79 1 Yes No 0 3 0 1
L:L:W9 R:R:L189 13.67 1 Yes No 0 4 0 1
L:L:W9 R:R:L192 4.56 1 Yes No 0 5 0 1
L:L:W9 R:R:L261 4.56 1 Yes Yes 0 5 0 1
L:L:G10 R:R:F280 10.54 0 No Yes 0 4 0 1
L:L:P12 R:R:F277 8.67 0 No Yes 0 3 0 1
R:R:F45 R:R:I40 5.02 3 Yes Yes 6 6 1 2
R:R:I40 R:R:N281 4.25 3 Yes No 6 4 2 2
R:R:D42 R:R:T95 4.34 3 Yes Yes 3 5 1 1
R:R:D42 R:R:I98 4.2 3 Yes No 3 3 1 1
R:R:D42 R:R:L99 9.5 3 Yes No 3 4 1 2
R:R:F45 R:R:T95 5.19 3 Yes Yes 6 5 1 1
R:R:F45 R:R:N281 7.25 3 Yes No 6 4 1 2
R:R:L46 R:R:T95 5.9 0 No Yes 5 5 2 1
R:R:S90 R:R:T124 4.8 0 No No 5 5 2 1
R:R:E94 R:R:I120 5.47 1 No No 4 5 1 2
R:R:D121 R:R:E94 6.5 1 Yes No 5 4 1 1
R:R:N118 R:R:Q115 6.6 1 Yes No 4 1 1 2
R:R:D117 R:R:D121 10.65 1 No Yes 6 5 1 1
R:R:I180 R:R:N118 4.25 1 Yes Yes 5 4 1 1
R:R:D121 R:R:I180 4.2 1 Yes Yes 5 5 1 1
R:R:I180 R:R:V122 4.61 1 Yes No 5 5 1 2
R:R:M128 R:R:W254 5.82 1 Yes Yes 5 7 1 2
R:R:I287 R:R:M128 4.37 1 No Yes 7 5 2 1
R:R:F179 R:R:L192 6.09 0 Yes No 5 5 2 1
R:R:L189 R:R:L261 5.54 1 No Yes 4 5 1 1
R:R:L189 R:R:V265 4.47 1 No Yes 4 4 1 2
R:R:L192 R:R:L261 4.15 1 No Yes 5 5 1 1
R:R:I287 R:R:W254 11.74 1 No Yes 7 7 2 2
R:R:F257 R:R:F258 9.65 0 Yes No 5 5 1 2
R:R:F257 R:R:L261 8.53 0 Yes Yes 5 5 1 1
R:R:F257 R:R:F280 4.29 0 Yes Yes 5 4 1 1
R:R:F257 R:R:I287 5.02 0 Yes No 5 7 1 2
R:R:H260 R:R:I264 9.28 2 Yes No 4 4 2 2
R:R:F277 R:R:H260 9.05 2 Yes Yes 3 4 1 2
R:R:F280 R:R:H260 16.97 0 Yes Yes 4 4 1 2
R:R:F277 R:R:I264 11.3 2 Yes No 3 4 1 2
R:R:C273 R:R:F277 4.19 2 Yes Yes 4 3 2 1
R:R:F277 R:R:G274 6.02 2 Yes No 3 2 1 2
R:R:F280 R:R:L284 10.96 0 Yes No 4 4 1 1
R:R:C125 R:R:S176 3.44 0 No No 4 7 1 2
R:R:M128 R:R:V87 3.04 1 Yes No 5 8 1 2
L:L:P12 R:R:P268 1.95 0 No No 0 3 0 1
L:L:Y2 R:R:A110 1.33 0 No No 0 3 0 1
R:R:N118 R:R:Q114 1.32 1 Yes No 4 2 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7F4F_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.93
Number of Linked Nodes 242
Number of Links 285
Number of Hubs 49
Number of Links mediated by Hubs 174
Number of Communities 9
Number of Nodes involved in Communities 65
Number of Links involved in Communities 90
Path Summary
Number Of Nodes in MetaPath 78
Number Of Links MetaPath 77
Number of Shortest Paths 48966
Length Of Smallest Path 3
Average Path Length 13.3032
Length of Longest Path 31
Minimum Path Strength 1.3
Average Path Strength 6.68089
Maximum Path Strength 18.755
Minimum Path Correlation 0.7
Average Path Correlation 0.929707
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.57143
Average % Of Corr. Nodes 51.7401
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 55.16
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeNLE
PDB ResiduesL:L:?4
Environment DetailsOpen EMBL-EBI Page
CodeNLE
NameNorleucine
Synonyms
  • L-NORLEUCINE
  • Norleucine
Identifier
FormulaC6 H13 N O2
Molecular Weight131.173
SMILES
PubChem21236
Formal Charge0
Total Atoms22
Total Chiral Atoms1
Total Bonds21
Total Aromatic Bonds0

CodeDPN
PDB ResiduesL:L:?7
Environment DetailsOpen EMBL-EBI Page
CodeDPN
NameD-Phenylalanine
SynonymsD-Phenylalanine
Identifier
FormulaC9 H11 N O2
Molecular Weight165.189
SMILES
PubChem71567
Formal Charge0
Total Atoms23
Total Chiral Atoms1
Total Bonds23
Total Aromatic Bonds6

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ01726
Sequence
>7F4F_nogp_Chain_R
LEVSISDGL FLSLGLVSL VENALVVAT IAKNRNLHS PMYCFICCL 
ALSDLLVSG SNVLETAVI LLLEAGALV ARAAVLQQL DNVIDVITC 
SSMLSSLCF LGAIAVDRY ISIFYALRY HSIVTLPRA RRAVAAIWV 
ASVVFSTLF IAYYDHVAV LLCLVVFFL AMLVLMAVL YVHMLARAC 
QHAQGIARL HKLKGAVTL TILLGIFFL CWGPFFLHL TLIVLCPEH 
PTCGCIFKN FNLFLALII CNAIIDPLI YAFHSQELR RTLKEVLT


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7F4DAPeptideMelanocortinMC1Homo sapiensα-MSH-chim(NtGi1-Gs)/β1/γ232021-09-08doi.org/10.1038/s41422-021-00557-y
7F4D (No Gprot) APeptideMelanocortinMC1Homo sapiensα-MSH-32021-09-08doi.org/10.1038/s41422-021-00557-y
7F4FAPeptideMelanocortinMC1Homo sapiensAfamelanotide-chim(NtGi1-Gs)/β1/γ22.92021-09-08doi.org/10.1038/s41422-021-00557-y
7F4F (No Gprot) APeptideMelanocortinMC1Homo sapiensAfamelanotide-2.92021-09-08doi.org/10.1038/s41422-021-00557-y
7F4HAPeptideMelanocortinMC1Homo sapiensAfamelanotide-chim(NtGi1-Gs)/β1/γ22.72021-09-08doi.org/10.1038/s41422-021-00557-y
7F4H (No Gprot) APeptideMelanocortinMC1Homo sapiensAfamelanotide-2.72021-09-08doi.org/10.1038/s41422-021-00557-y
7F4IAPeptideMelanocortinMC1Homo sapiensSHU9119-chim(NtGi1-Gs)/β1/γ23.12021-09-08doi.org/10.1038/s41422-021-00557-y
7F4I (No Gprot) APeptideMelanocortinMC1Homo sapiensSHU9119-3.12021-09-08doi.org/10.1038/s41422-021-00557-y
9K3PAPeptideMelanocortinMC1Homo sapiens--chim(NtGi1-Gs)/β1/γ22.982025-08-06doi.org/10.1016/j.str.2025.03.004
9K3P (No Gprot) APeptideMelanocortinMC1Homo sapiens--2.982025-08-06doi.org/10.1016/j.str.2025.03.004




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Download 7F4F_nogp.zip



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