Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:E18 4.2403
2R:R:K22 6.55413
3R:R:Y37 4.885458
4R:R:F45 4.26406
5R:R:M64 5.5525426
6R:R:Y68 4.90167627
7R:R:F79 8.16407
8R:R:W86 7.76429717
9R:R:Y89 7.52514
10R:R:W94 12.212519
11R:R:F96 8.715407
12R:R:T105 5.9425415
13R:R:F117 3.9585
14R:R:F118 8.66467
15R:R:D125 7.41428
16R:R:R140 7.6875406
17R:R:F166 7.886545
18R:R:S169 4.36414
19R:R:C178 9.3575419
20R:R:F182 5.8875445
21R:R:Y187 8.51403
22R:R:W190 8.43667643
23R:R:K197 4.065403
24R:R:I200 2.99405
25R:R:P206 4.26409
26R:R:Y214 6.334509
27R:R:W248 7.932579
28R:R:Y251 9.6625407
29R:R:L255 8.5775406
30R:R:Q261 5.0954114
31R:R:M287 6.466558
32R:R:Y297 5.955409
33R:R:F304 5.67608
34R:R:F311 4.13404
35L:L:?23 8.352505
36L:L:D28 7.965414
37L:L:I29 4.6175415
38L:L:V30 8.12413
39L:L:Y50 4.33254127
40L:L:V62 4.60254128
41L:L:R70 7.095404
42L:L:Q71 4.7854103
43L:L:N75 5.99406
44L:L:W80 10.106538
45L:L:Y84 8.135434
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:R70 R:R:E18 12.59236.98YesYes043
2L:L:K68 L:L:R70 15.34513.61NoYes044
3L:L:K68 L:L:T66 16.26969.01NoNo049
4L:L:I47 L:L:T66 19.91543.04NoNo079
5L:L:F64 L:L:I47 20.81375.02NoNo087
6L:L:F64 L:L:V62 21.51245.24NoYes1288
7L:L:V62 L:L:Y52 27.74555.05YesNo083
8L:L:Y52 R:R:H181 28.54934.36NoNo034
9R:R:H181 R:R:R168 29.329410.16NoNo944
10R:R:N98 R:R:R168 31.08932.41NoNo034
11R:R:N98 R:R:S169 12.69734.47NoYes034
12R:R:S169 R:R:W94 17.55674.94YesYes149
13R:R:W94 R:R:Y89 14.54139.65YesYes194
14L:L:D28 R:R:Y89 18.54439.2YesYes144
15L:L:D28 R:R:K26 17.567213.83YesNo141
16L:L:D28 R:R:A30 18.14244.63YesNo044
17R:R:A30 R:R:A90 16.51911.79NoNo045
18R:R:A90 R:R:P34 14.89065.61NoNo056
19R:R:P34 R:R:P35 13.25685.84NoNo065
20R:R:L36 R:R:P35 11.61781.64NoNo065
21R:R:N98 R:R:Q102 26.41647.92NoNo037
22R:R:Q102 R:R:T167 27.01014.25NoNo075
23R:R:T105 R:R:T167 27.044210.99YesNo055
24R:R:F109 R:R:T105 34.07323.89NoYes055
25R:R:F109 R:R:Y108 33.02788.25NoNo057
26R:R:F79 R:R:Y108 86.068112.38YesNo077
27R:R:F79 R:R:M287 62.18383.73YesYes078
28R:R:M287 R:R:V83 21.55717.61YesNo587
29R:R:P84 R:R:V83 21.30763.53NoNo097
30R:R:F41 R:R:P84 19.91811.56NoNo079
31R:R:M287 R:R:V40 37.69549.13YesNo087
32R:R:C291 R:R:V40 36.30063.42NoNo087
33R:R:F41 R:R:F45 12.89179.65NoYes076
34R:R:C291 R:R:I292 33.49534.91NoNo086
35R:R:I292 R:R:I295 32.08482.94NoNo066
36R:R:F299 R:R:I295 30.6696.28NoNo076
37R:R:F299 R:R:F304 27.87166.43NoYes078
38R:R:F304 R:R:I54 13.43288.79YesNo087
39R:R:F311 R:R:I54 12.00135.02YesNo047
40R:R:T105 R:R:W86 10.33073.64YesYes157
41R:R:W86 R:R:Y89 26.36928.68YesYes174
42R:R:C178 R:R:W94 10.85619.59YesYes199
43R:R:C178 R:R:W86 18.59686.53YesYes197
44R:R:S180 R:R:T167 30.50094.8NoNo045
45R:R:F166 R:R:S180 30.3883.96YesNo054
46R:R:F166 R:R:F182 14.83284.29YesYes455
47R:R:F182 R:R:Q194 25.16617.03YesNo055
48R:R:K197 R:R:Q194 1006.78YesNo035
49R:R:F113 R:R:K197 96.25966.2NoYes073
50R:R:F113 R:R:F117 89.48025.36NoYes875
51R:R:F117 R:R:T152 86.54095.19YesNo056
52R:R:L121 R:R:T152 65.52764.42NoNo066
53R:R:L121 R:R:Y68 59.44165.86NoYes267
54R:R:D125 R:R:Y68 54.92113.45YesYes287
55R:R:D125 R:R:T65 48.483110.12YesNo088
56R:R:L122 R:R:T65 47.30114.42NoNo098
57R:R:F118 R:R:T152 25.30015.19YesNo076
58R:R:L122 R:R:Y297 46.09288.21NoYes099
59R:R:F118 R:R:S114 14.84867.93YesNo677
60R:R:S114 R:R:S75 13.5516.52NoNo078
61R:R:G111 R:R:S75 10.88233.71NoNo088
62R:R:F112 R:R:F79 23.36425.36NoYes077
63L:L:P25 R:R:T105 23.02545.25NoYes155
64L:L:P26 R:R:W86 42.344616.21NoYes017
65R:R:K171 R:R:S169 16.32484.59NoYes024
66R:R:K171 R:R:Y176 11.68614.78NoNo024
67R:R:F112 R:R:W248 21.94327.02NoYes079
68R:R:W248 R:R:Y244 10.36758.68YesNo799
69R:R:R126 R:R:Y297 38.87746.17NoYes099
70R:R:R126 R:R:Y214 37.64556.17NoYes099
71R:R:T123 R:R:Y214 21.4736.24NoYes099
72R:R:C213 R:R:T123 18.86213.38NoNo089
73R:R:C213 R:R:Y127 17.54886.72NoNo088
74R:R:V131 R:R:Y127 12.242912.62NoNo078
75R:R:F166 R:R:W190 15.200511.02YesYes453
76L:L:?23 L:L:K56 10.714210.56YesNo053
77L:L:?23 L:L:G24 73.62567.32YesNo054
78L:L:G24 L:L:P25 73.91984.06NoNo045
79L:L:E77 R:R:S185 21.51244.31NoNo033
80R:R:Q186 R:R:S185 22.36352.89NoNo033
81R:R:Q186 R:R:W190 23.19615.48NoYes033
82L:L:E77 L:L:N75 18.95673.94NoYes036
83L:L:?23 R:R:L255 34.95848.88YesYes056
84L:L:P26 R:R:E283 34.56964.72NoNo016
85R:R:E283 R:R:Y251 34.17312.35NoYes067
86R:R:L255 R:R:M279 18.14775.65YesNo065
87R:R:M279 R:R:N258 14.60174.21NoNo054
88L:L:K78 L:L:N75 12.04594.2NoYes036
89L:L:D28 L:L:I29 15.0644.2YesYes145
90L:L:I29 R:R:W86 16.3724.7YesYes157
91L:L:P25 R:R:W86 51.301512.16NoYes157
92L:L:?23 R:R:Q194 87.07427.12YesNo055
93L:L:P26 R:R:Y108 54.479816.69NoNo017
94R:R:L255 R:R:Y251 30.508814.07YesYes067
95R:R:F182 R:R:W190 10.74055.01YesYes453
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:R70 R:R:T16 5.17 0 Yes No 4 2 0 1
R:R:E18 R:R:P19 4.72 0 Yes No 3 4 1 2
L:L:R70 R:R:E18 6.98 0 Yes Yes 4 3 0 1
R:R:K22 R:R:K26 7.18 1 Yes No 3 1 1 1
R:R:K22 R:R:N273 8.39 1 Yes No 3 1 1 2
L:L:V30 R:R:K22 7.59 1 Yes Yes 3 3 0 1
L:L:D28 R:R:K26 13.83 1 Yes No 4 1 0 1
L:L:V30 R:R:K26 4.55 1 Yes No 3 1 0 1
R:R:A29 R:R:Q280 4.55 0 No No 5 3 2 1
L:L:D28 R:R:A30 4.63 1 Yes No 4 4 0 1
R:R:L33 R:R:Q280 3.99 0 No No 6 3 2 1
R:R:F79 R:R:Y108 12.38 0 Yes No 7 7 2 1
R:R:W86 R:R:Y89 8.68 1 Yes Yes 7 4 1 1
R:R:T105 R:R:W86 3.64 1 Yes Yes 5 7 1 1
R:R:C178 R:R:W86 6.53 1 Yes Yes 9 7 2 1
L:L:P25 R:R:W86 12.16 1 No Yes 5 7 0 1
L:L:P26 R:R:W86 16.21 0 No Yes 1 7 0 1
L:L:I29 R:R:W86 4.7 1 Yes Yes 5 7 0 1
R:R:W94 R:R:Y89 9.65 1 Yes Yes 9 4 2 1
R:R:C178 R:R:Y89 4.03 1 Yes Yes 9 4 2 1
L:L:D28 R:R:Y89 9.2 1 Yes Yes 4 4 0 1
L:L:I29 R:R:Y89 6.04 1 Yes Yes 5 4 0 1
R:R:C178 R:R:W94 19.59 1 Yes Yes 9 9 2 2
R:R:F109 R:R:T105 3.89 0 No Yes 5 5 2 1
R:R:T105 R:R:T167 10.99 1 Yes No 5 5 1 2
L:L:P25 R:R:T105 5.25 1 No Yes 5 5 0 1
R:R:F109 R:R:Y108 8.25 0 No No 5 7 2 1
L:L:P26 R:R:Y108 16.69 0 No No 1 7 0 1
R:R:Q170 R:R:R168 8.18 9 No No 1 4 2 2
R:R:H181 R:R:R168 10.16 9 No No 4 4 1 2
R:R:H181 R:R:Q170 7.42 9 No No 4 1 1 2
L:L:F51 R:R:E172 22.15 10 No No 4 2 0 1
L:L:L31 R:R:T177 5.9 0 No No 4 2 0 1
L:L:Y52 R:R:H181 4.36 0 No No 3 4 0 1
R:R:F182 R:R:Y187 7.22 4 Yes Yes 5 3 2 1
R:R:F182 R:R:Q194 7.03 4 Yes No 5 5 2 1
L:L:P76 R:R:Y184 9.74 0 No No 9 1 0 1
L:L:E77 R:R:Y184 6.73 0 No No 3 1 0 1
L:L:E77 R:R:S185 4.31 0 No No 3 3 0 1
R:R:K191 R:R:Y187 7.17 0 No Yes 4 3 2 1
L:L:G55 R:R:Y187 4.35 0 No Yes 6 3 0 1
L:L:P60 R:R:Y187 15.3 0 No Yes 6 3 0 1
R:R:K197 R:R:Q194 6.78 0 Yes No 3 5 2 1
L:L:?23 R:R:Q194 7.12 0 Yes No 5 5 0 1
R:R:T195 R:R:T259 12.56 0 No No 5 5 1 2
L:L:?23 R:R:T195 7.88 0 Yes No 5 5 0 1
R:R:I198 R:R:L255 5.71 0 No Yes 5 6 2 1
R:R:L255 R:R:Y251 14.07 0 Yes Yes 6 7 1 2
R:R:E283 R:R:Y251 12.35 0 No Yes 6 7 1 2
R:R:L255 R:R:M279 5.65 0 Yes No 6 5 1 2
L:L:?23 R:R:L255 8.88 0 Yes Yes 5 6 0 1
R:R:Q261 R:R:S272 5.78 11 Yes No 4 3 2 1
L:L:F35 R:R:S272 3.96 0 No No 5 3 0 1
L:L:V30 R:R:D276 14.61 1 Yes No 3 4 0 1
L:L:V30 R:R:Q280 5.73 1 Yes No 3 3 0 1
L:L:P26 R:R:E283 4.72 0 No No 1 6 0 1
L:L:S54 R:R:S179 3.26 0 No No 7 3 0 1
R:R:S179 R:R:T177 3.2 0 No No 3 2 1 1
R:R:K22 R:R:V25 3.04 1 Yes No 3 1 1 2
R:R:Q186 R:R:S185 2.89 0 No No 3 3 2 1
L:L:Q71 R:R:L174 2.66 10 Yes No 3 4 0 1
R:R:E18 R:R:Q21 2.55 0 Yes No 3 1 1 2
L:L:Q71 R:R:E18 2.55 10 Yes Yes 3 3 0 1
R:R:T82 R:R:W86 2.43 0 No Yes 7 7 2 1
R:R:A30 R:R:A90 1.79 0 No No 4 5 1 2
R:R:E172 R:R:G173 1.64 0 No No 2 1 1 1
L:L:E49 R:R:G173 1.64 0 No No 6 1 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7O7F_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.38
Number of Linked Nodes 339
Number of Links 365
Number of Hubs 45
Number of Links mediated by Hubs 169
Number of Communities 12
Number of Nodes involved in Communities 52
Number of Links involved in Communities 63
Path Summary
Number Of Nodes in MetaPath 96
Number Of Links MetaPath 95
Number of Shortest Paths 83863
Length Of Smallest Path 3
Average Path Length 17.4638
Length of Longest Path 46
Minimum Path Strength 1.415
Average Path Strength 6.71026
Maximum Path Strength 19.315
Minimum Path Correlation 0.7
Average Path Correlation 0.947039
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 2.63158
Average % Of Corr. Nodes 56.5713
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 36.8646
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Interleukin 8-like chemokines   • Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like   • WD40 repeat-like   • Ras-like P-loop GTPases
SCOP2Family Identifier• Interleukin 8-like chemokines   • Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like   • WD40 repeat-like   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodePCA
PDB ResiduesL:L:?23
Environment DetailsOpen EMBL-EBI Page
CodePCA
NamePidolic acid
Synonyms(S)-(−)-2-pyrrolidone-5-carboxylic acid
Identifier
FormulaC5 H7 N O3
Molecular Weight129.114
SMILES
PubChem7405
Formal Charge0
Total Atoms16
Total Chiral Atoms1
Total Bonds16
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP51681
Sequence
>7O7F_nogp_Chain_R
TSEPCQKIN VKQIAARLL PPLYSLVFI FGFVGNMLV ILILINCKR 
LKSMTDIYL LNLAISDLF FLLTVPFWA HYAAAQWDF GNTMCQLLT 
GLYFIGFFS GIFFIILLT IDRYLAVVH AVFALKART VTFGVVTSV 
ITWVVAVFA SLPGIIFTR SQKEGLHYT CSSHFPYSQ YQFWKNFQT 
LKIVILGLV LPLLVMVIC YSGILKTLL RCRNEKKRH RAVRLIFTI 
MIVYFLFWA PYNIVLLLN TFQEFFGLN NCSSSNRLD QAMQVTETL 
GMTHCCINP IIYAFVGEK FRNYLLVFF QKH


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

ChainL
Protein6P4-CCL5
UniProtP13501
Sequence
>7O7F_nogp_Chain_L
?GPPGDIVL ACCFAYIAR PLPRAHIKE YFYTSGKCS NPAVVFVTR 
KNRQVCANP EKKWVREYI NSLE


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
4MBSAProteinChemokineCCR5Homo sapiens-Maraviroc-2.712013-09-11doi.org/10.1126/science.1241475
5UIWAProteinChemokineCCR5Homo sapiens5P7-CCL5--2.22017-06-28doi.org/10.1016/j.immuni.2017.05.002
6AKXAProteinChemokineCCR5Homo sapiens-A4R-2.82018-10-24doi.org/10.1021/acs.jmedchem.8b01077
6AKYAProteinChemokineCCR5Homo sapiens-Maraviroc-2.82018-10-24doi.org/10.1021/acs.jmedchem.8b01077
6MEOAProteinChemokineCCR5Homo sapiensGp160; CD4--3.92018-12-12doi.org/10.1038/s41586-018-0804-9
6METAProteinChemokineCCR5Homo sapiensGp160; CD4--4.52018-12-12doi.org/10.1038/s41586-018-0804-9
7O7FAProteinChemokineCCR5Homo sapiens6P4-CCL5-Gi1/β1/γ13.152021-06-30doi.org/10.1126/sciadv.abg8685
7O7F (No Gprot) AProteinChemokineCCR5Homo sapiens6P4-CCL5-3.152021-06-30doi.org/10.1126/sciadv.abg8685
7F1QAProteinChemokineCCR5Homo sapiensCCL3-Gi1/β1/γ22.92021-07-14doi.org/10.1038/s41467-021-24438-5
7F1Q (No Gprot) AProteinChemokineCCR5Homo sapiensCCL3-2.92021-07-14doi.org/10.1038/s41467-021-24438-5
7F1RAProteinChemokineCCR5Homo sapiens--Gi1/β1/γ232021-07-14doi.org/10.1038/s41467-021-24438-5
7F1R (No Gprot) AProteinChemokineCCR5Homo sapiens--32021-07-14doi.org/10.1038/s41467-021-24438-5
7F1SAProteinChemokineCCR5Homo sapiens--Gi1/β1/γ22.82021-07-14doi.org/10.1038/s41467-021-24438-5
7F1S (No Gprot) AProteinChemokineCCR5Homo sapiens--2.82021-07-14doi.org/10.1038/s41467-021-24438-5
7F1TAProteinChemokineCCR5Homo sapiensCCL3--2.62021-07-14doi.org/10.1038/s41467-021-24438-5




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Download 7O7F_nogp.zip



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