Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:L52 5.6525478
2R:R:M56 4.166577
3R:R:P60 6.458517
4R:R:F61 8.2175418
5R:R:Y64 7.39608
6R:R:L68 5.41667639
7R:R:D72 7.6075439
8R:R:F75 4.52167626
9R:R:M79 6.885425
10R:R:E86 5.2025403
11R:R:E99 7.9875455
12R:R:R103 7.555454
13R:R:M105 6.8225424
14R:R:Y109 6.71667628
15R:R:I119 4.1575439
16R:R:Q122 9.83419
17R:R:F133 6.8617
18R:R:R137 7.49719
19R:R:W150 6.6825409
20R:R:M180 6.086543
21R:R:Q182 6.445406
22R:R:W204 6.055486
23R:R:Q210 11.005495
24R:R:F220 10.155495
25R:R:L237 7.44425
26R:R:Y240 5.53403
27R:R:W241 8.13424
28R:R:Y245 6.31444
29R:R:L249 4.0554103
30R:R:R262 9.8975404
31R:R:N272 6.9125439
32R:R:Y276 5.44739
33R:R:F277 4.774577
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:E86 R:R:Y27 27.59733.37YesNo033
2R:R:V255 R:R:Y27 19.51313.79NoNo013
3R:R:V23 R:R:V255 13.24521.6NoNo611
4R:R:T22 R:R:V23 11.11273.17NoNo011
5R:R:E86 R:R:R262 19.02435.82YesYes034
6R:R:M79 R:R:R262 30.00294.96YesYes054
7R:R:M79 R:R:S266 14.56784.6YesNo056
8R:R:F75 R:R:S269 92.68265.28YesNo069
9R:R:F75 R:R:M79 38.50874.98YesYes265
10R:R:F75 R:R:M105 27.9954.98YesYes264
11R:R:M105 R:R:T82 22.76214.52YesNo043
12R:R:E86 R:R:T82 21.85644.23YesNo033
13R:R:D72 R:R:S269 93.22898.83YesNo099
14R:R:D72 R:R:N45 11.53926.73YesNo099
15R:R:F277 R:R:L52 13.17334.87YesYes778
16R:R:C62 R:R:L52 25.77637.94NoYes088
17R:R:C62 R:R:N59 26.97434.72NoNo088
18R:R:F61 R:R:N59 25.77156.04YesNo088
19R:R:F61 R:R:Q122 50.263614.05YesYes189
20R:R:Q122 R:R:Y64 10012.4YesYes098
21R:R:I119 R:R:Y64 93.35833.63YesYes098
22R:R:I119 R:R:L68 89.05984.28YesYes399
23R:R:D72 R:R:L68 91.30738.14YesYes399
24R:R:S142 R:R:Y64 17.807211.45NoYes098
25R:R:F133 R:R:Q122 34.82377.03YesYes179
26R:R:Q122 R:R:R137 14.53425.84YesYes199
27R:R:R137 R:R:S142 15.66996.59YesNo099
28R:R:F61 R:R:S126 29.93585.28YesNo188
29R:R:F133 R:R:S126 29.37037.93YesNo178
30R:R:C146 R:R:Y64 37.11424.03NoYes078
31R:R:C146 R:R:N67 35.254911.02NoNo079
32R:R:M105 R:R:Y106 20.44284.79YesNo043
33R:R:W241 R:R:Y106 14.634816.4YesNo043
34R:R:Q182 R:R:W241 28.43596.57YesYes064
35R:R:Q182 R:R:T160 30.72175.67YesNo064
36R:R:N157 R:R:T160 31.34464.39NoNo074
37R:R:F107 R:R:N157 31.459710.87NoNo057
38R:R:F107 R:R:W150 31.81435.01NoYes059
39R:R:N67 R:R:W150 34.80455.65NoYes099
40R:R:F75 R:R:Y109 29.90225.16YesYes268
41R:R:F75 R:R:S265 12.10473.96YesNo268
42R:R:E86 R:R:H98 12.67977.39YesNo035
43R:R:K102 R:R:Y106 16.752910.75NoNo033
44R:R:L237 R:R:Y109 11.419410.55YesYes258
45R:R:L237 R:R:S265 11.39547.51YesNo258
46R:R:F258 R:R:R262 10.858720.31NoYes034
47R:R:F258 R:R:Y240 10.341210.32NoYes033
48R:R:S261 R:R:Y240 19.98273.82NoYes053
49R:R:L237 R:R:S261 25.66136.01YesNo055
50R:R:C153 R:R:V111 28.67555.12NoNo087
51R:R:V111 R:R:W150 29.935813.48NoYes079
52R:R:C153 R:R:S114 26.12613.44NoNo087
53R:R:L190 R:R:S114 23.53843NoNo087
54R:R:L190 R:R:T117 20.91248.84NoNo088
55R:R:M194 R:R:T117 18.2484.52NoNo088
56R:R:S126 R:R:V127 57.2123.23NoNo088
57R:R:V127 R:R:W204 22.81963.68NoYes086
58R:R:L128 R:R:W204 16.28816.83NoYes066
59R:R:L128 R:R:T200 11.6834.42NoNo065
60R:R:L201 R:R:V127 33.68324.47NoNo088
61R:R:R137 R:R:W132 10.968913YesNo196
62R:R:H136 R:R:W132 14.29464.23NoNo066
63R:R:C135 R:R:H136 10.73415.9NoNo076
64R:R:L141 R:R:R137 11.491310.93NoYes159
65R:R:T160 R:R:V178 10.19263.17NoNo044
66R:R:D179 R:R:Y245 18.20019.2NoYes034
67R:R:D179 R:R:Q182 19.55631.31NoYes036
68R:R:F230 R:R:M194 12.804316.17NoNo098
69R:R:F202 R:R:V223 29.84953.93NoNo058
70R:R:L201 R:R:V223 31.77112.98NoNo088
71R:R:F202 R:R:F220 27.597318.22NoYes055
72R:R:F220 R:R:V205 11.55365.24YesNo056
73R:R:F220 R:R:Q210 11.515212.88YesYes955
74R:R:V243 R:R:Y240 22.79091.26NoYes053
75R:R:L249 R:R:V243 19.91571.49YesNo035
76R:R:L249 R:R:P250 11.66384.93YesNo1031
77R:R:W241 R:R:Y109 12.52643.86YesYes248
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 7Y13
Class A
SubFamily Orphan
Type Orphan
SubType MRGPRD
Species Homo Sapiens
Ligand -
Other Ligand(s) -
Protein Partners -
PDB Resolution 3.1
Date 2022-07-20
D.O.I. 10.1038/s42003-022-03668-3
Net Summary
Imin 3.2
Number of Linked Nodes 244
Number of Links 273
Number of Hubs 33
Number of Links mediated by Hubs 120
Number of Communities 10
Number of Nodes involved in Communities 49
Number of Links involved in Communities 66
Path Summary
Number Of Nodes in MetaPath 78
Number Of Links MetaPath 77
Number of Shortest Paths 44117
Length Of Smallest Path 3
Average Path Length 14.0226
Length of Longest Path 28
Minimum Path Strength 1.275
Average Path Strength 6.16842
Maximum Path Strength 16.45
Minimum Path Correlation 0.7
Average Path Correlation 0.922807
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 5
Average % Of Corr. Nodes 43.7119
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 44.4501
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• binding   • tetrapyrrole binding   • heme binding   • electron transfer activity   • cation binding   • transition metal ion binding   • iron ion binding   • ion binding   • metal ion binding   • small molecule binding   • molecular transducer activity   • G protein-coupled receptor activity   • transmembrane signaling receptor activity   • signaling receptor activity   • peptide receptor activity   • G protein-coupled peptide receptor activity   • electron transport chain   • metabolic process   • cellular process   • generation of precursor metabolites and energy   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cell communication   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway
Gene OntologyBiological Process• electron transport chain   • metabolic process   • cellular process   • generation of precursor metabolites and energy   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cell communication   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • signal transduction   • regulation of systemic arterial blood pressure by renin-angiotensin   • multicellular organismal process   • regulation of systemic arterial blood pressure by hormone   • system process   • regulation of systemic arterial blood pressure mediated by a chemical signal   • negative regulation of blood pressure   • renal control of peripheral vascular resistance involved in regulation of systemic arterial blood pressure   • circulatory system process   • angiotensin-mediated vasodilation involved in regulation of systemic arterial blood pressure   • negative regulation of systemic arterial blood pressure   • regulation of biological quality   • blood vessel diameter maintenance   • renal system process involved in regulation of systemic arterial blood pressure   • blood circulation   • regulation of tube diameter   • maintenance of blood vessel diameter homeostasis by renin-angiotensin   • renal system process   • regulation of blood pressure   • regulation of tube size   • regulation of systemic arterial blood pressure   • endocrine process   • vascular process in circulatory system   • vasodilation   • regulation of anatomical structure size   • cellular anatomical structure   • periplasmic space   • cell periphery   • plasma membrane   • membrane   • extracellular region   • extracellular space
Gene OntologyCellular Component
SCOP2Domain Identifier
SCOP2Family Identifier
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ8TDS7
Sequence
>7Y13_Chain_R
TVHTAYLVL SSLAMFTCL CGMAGNSMV IWLLGFRMH RNPFCIYIL 
NLAAADLLF LFSMASTLS LETQPLVNT TDKVHELMK RLMYFAYTV 
GLSLLTAIS TQRCLSVLF PIWFKCHRP RHLSAWVCG LLWTLCLLM 
NGLTSSFCS KFLKFNEDR CFRVDMVQA ALIMGVLTP VMTLSSLTL 
FVWVRRSSQ QWRRQPTRL FVVVLASVL VFLICSLPL SIYWFVLYW 
LSLPPEMQV LCFSLSRLS SSVSSSANP VIYFLVGSR RSH


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
9DQJAOrphanOrphanMRGPRDHomo sapiensEP-3945-chim(NtGi1-Gs-CtGq)/β1/γ22.92024-12-1110.1016/j.celrep.2024.114942
9DQJ (No Gprot) AOrphanOrphanMRGPRDHomo sapiensEP-3945-2.92024-12-1110.1016/j.celrep.2024.114942
9DQHAOrphanOrphanMRGPRDHomo sapiensEP-2825-chim(NtGi1-Gs-CtGq)/β1/γ22.922024-12-1110.1016/j.celrep.2024.114942
9DQH (No Gprot) AOrphanOrphanMRGPRDHomo sapiensEP-2825-2.922024-12-1110.1016/j.celrep.2024.114942
7Y14AOrphanOrphanMRGPRDHomo sapiensβ-Alanine--3.22022-07-2010.1038/s42003-022-03668-3
7Y13AOrphanOrphanMRGPRDHomo sapiens---3.12022-07-2010.1038/s42003-022-03668-3
7Y15AOrphanOrphanMRGPRDHomo sapiens--Gi1/β1/γ22.92022-07-2010.1038/s42003-022-03668-3
7Y15 (No Gprot) AOrphanOrphanMRGPRDHomo sapiens--2.92022-07-2010.1038/s42003-022-03668-3
7Y12AOrphanOrphanMRGPRDHomo sapiensβ-Alanine-Gi1/β1/γ23.12022-07-2010.1038/s42003-022-03668-3
7Y12 (No Gprot) AOrphanOrphanMRGPRDHomo sapiensβ-Alanine-3.12022-07-2010.1038/s42003-022-03668-3




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Download 7Y13.zip



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