Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 10.01581210
2R:R:M35 2.425404
3R:R:C38 2.935406
4R:R:F61 7.55438
5R:R:Y64 6.835608
6R:R:D72 7.2125449
7R:R:E86 5.7525453
8R:R:R103 7.165464
9R:R:M105 4.855404
10R:R:Y106 10.7925413
11R:R:F107 5.84415
12R:R:Y109 6.548518
13R:R:V111 6.55517
14R:R:I119 5.8575439
15R:R:Q122 4.458539
16R:R:L128 5.668576
17R:R:R137 7.2975439
18R:R:Q182 8.21516
19R:R:L190 4.405408
20R:R:W212 5.5325423
21R:R:P216 6.305427
22R:R:F220 6.815425
23R:R:F230 7.1675409
24R:R:Y240 8.7925413
25R:R:W241 13.8875414
26R:R:Y245 7.24414
27R:R:R262 5.98286754
28R:R:S268 4.415409
29R:R:Y276 5.854509
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:Y106 43.010818.71YesYes103
2R:R:M105 R:R:Y106 34.91768.38YesYes043
3R:R:M105 R:R:M79 98.98845.78YesNo045
4R:R:M79 R:R:R262 50.56944.96NoYes054
5R:R:R262 R:R:Y27 22.49163.09YesNo043
6R:R:V255 R:R:Y27 20.741911.36NoNo013
7R:R:V23 R:R:V255 18.92851.6NoNo011
8L:L:?1 R:R:W241 17.929633.62YesYes104
9R:R:W241 R:R:Y240 15.00929.65YesYes143
10R:R:F258 R:R:Y240 13.88318.25NoYes033
11R:R:F258 R:R:R262 13.25324.28NoYes034
12R:R:C38 R:R:M79 66.59033.24YesNo065
13R:R:C38 R:R:S266 17.05161.72YesNo066
14R:R:C38 R:R:L76 45.77853.17YesNo067
15R:R:L76 R:R:S269 44.315110.51NoNo079
16R:R:D72 R:R:S269 42.8395.89YesNo099
17R:R:D72 R:R:N45 25.76196.73YesNo099
18R:R:L73 R:R:N45 22.49169.61NoNo079
19R:R:I49 R:R:L73 17.49062.85NoNo077
20R:R:A69 R:R:I49 14.0933.25NoNo097
21R:R:A69 R:R:V48 12.37513.39NoNo099
22R:R:F277 R:R:V48 10.64455.24NoNo079
23L:L:?1 R:R:Y109 33.02793.74YesYes108
24R:R:L113 R:R:Y109 1007.03NoYes088
25R:R:F230 R:R:L113 99.7714.87YesNo098
26R:R:F230 R:R:L116 81.94314.87YesNo099
27R:R:L116 R:R:Y276 81.29415.86NoYes099
28R:R:I65 R:R:Y276 23.99953.63NoYes089
29R:R:F61 R:R:I65 23.102412.56YesNo088
30R:R:F61 R:R:Q122 43.76153.51YesYes389
31R:R:P60 R:R:Q122 15.43551.58NoYes079
32R:R:C62 R:R:P60 11.6183.77NoNo087
33R:R:I119 R:R:Y276 53.0196.04YesYes099
34R:R:F61 R:R:I119 23.12788.79YesYes389
35R:R:I119 R:R:Y64 28.96234.84YesYes098
36R:R:Q122 R:R:Y64 30.3629.02YesYes098
37L:L:?1 R:R:Q182 37.99719.56YesYes106
38R:R:N157 R:R:Q182 20.59557.92NoYes176
39R:R:F107 R:R:N157 19.89579.67YesNo157
40R:R:F107 R:R:W150 13.76226.01YesNo159
41R:R:N67 R:R:W150 16.44085.65NoNo099
42R:R:C146 R:R:N67 13.44411.02NoNo079
43R:R:C146 R:R:Y64 12.15884.03NoYes078
44R:R:D72 R:R:N272 15.74096.73YesNo499
45R:R:Q182 R:R:T110 17.29345.67YesNo166
46R:R:C153 R:R:T110 16.35175.07NoNo086
47R:R:F75 R:R:Y109 69.40895.16NoYes068
48R:R:E86 R:R:R262 25.43115.82YesYes534
49R:R:E86 R:R:T82 10.28825.64YesNo033
50R:R:E86 R:R:H98 14.41114.92YesNo035
51R:R:H98 R:R:L85 12.61696.43NoNo053
52R:R:L85 R:R:T94 10.54274.42NoNo031
53R:R:K102 R:R:Y106 21.52458.36NoYes033
54R:R:K102 R:R:R103 19.98478.66NoYes034
55R:R:C153 R:R:S114 13.32953.44NoNo087
56R:R:F230 R:R:M194 51.746512.44YesNo098
57R:R:M194 R:R:S120 50.39776.13NoNo089
58R:R:S120 R:R:S197 22.87334.89NoNo098
59R:R:S120 R:R:S198 29.28684.89NoNo098
60R:R:C124 R:R:S197 19.65395.16NoNo088
61R:R:C124 R:R:L128 16.31994.76NoYes786
62R:R:Q122 R:R:R137 48.38073.5YesYes399
63R:R:R137 R:R:W132 23.127810YesNo096
64R:R:H136 R:R:W132 15.46732.12NoNo066
65R:R:C135 R:R:H136 11.6187.37NoNo076
66R:R:L141 R:R:R137 22.6576.07NoYes059
67R:R:L141 R:R:P138 19.30393.28NoNo058
68R:R:P138 R:R:W144 15.46731.35NoNo085
69R:R:H140 R:R:W144 11.6184.23NoNo055
70L:L:?1 R:R:T160 11.85343.53YesNo104
71R:R:T160 R:R:V178 13.380411.11NoNo044
72R:R:L159 R:R:V178 11.75162.98NoNo064
73R:R:F163 R:R:L159 10.11017.31NoNo046
74R:R:S198 R:R:V223 22.98783.23NoNo088
75R:R:L224 R:R:V223 21.63262.98NoNo058
76R:R:F202 R:R:L224 19.99753.65NoNo055
77R:R:F202 R:R:F220 16.657115NoYes255
78R:R:F220 R:R:P216 13.39314.33YesYes257
79R:R:N272 R:R:S268 14.0934.47NoYes099
80R:R:I186 R:R:S238 12.30513.1NoNo077
81R:R:E252 R:R:V23 12.73141.43NoNo021
82R:R:E252 R:R:P251 10.65096.29NoNo022
83R:R:F75 R:R:M105 66.80033.73NoYes064
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:Y106 18.71 1 Yes Yes 0 3 0 1
L:L:?1 R:R:Y109 3.74 1 Yes Yes 0 8 0 1
L:L:?1 R:R:T160 3.53 1 Yes No 0 4 0 1
L:L:?1 R:R:C164 3.8 1 Yes No 0 6 0 1
L:L:?1 R:R:F170 3.89 1 Yes No 0 1 0 1
L:L:?1 R:R:D179 18.41 1 Yes No 0 3 0 1
L:L:?1 R:R:Q182 9.56 1 Yes Yes 0 6 0 1
L:L:?1 R:R:A183 5.03 1 Yes No 0 5 0 1
L:L:?1 R:R:S238 4.79 1 Yes No 0 7 0 1
L:L:?1 R:R:W241 33.62 1 Yes Yes 0 4 0 1
L:L:?1 R:R:F242 3.89 1 Yes No 0 5 0 1
L:L:?1 R:R:Y245 11.22 1 Yes Yes 0 4 0 1
R:R:F75 R:R:M105 3.73 0 No Yes 6 4 2 2
R:R:F75 R:R:Y109 5.16 0 No Yes 6 8 2 1
R:R:K102 R:R:Y106 8.36 0 No Yes 3 3 2 1
R:R:M105 R:R:Y106 8.38 0 Yes Yes 4 3 2 1
R:R:W241 R:R:Y106 7.72 1 Yes Yes 4 3 1 1
R:R:L113 R:R:Y109 7.03 0 No Yes 8 8 2 1
R:R:L237 R:R:Y109 11.72 0 No Yes 5 8 2 1
R:R:S238 R:R:Y109 5.09 1 No Yes 7 8 1 1
R:R:N157 R:R:T110 10.24 1 No No 7 6 2 2
R:R:Q182 R:R:T110 5.67 1 Yes No 6 6 1 2
R:R:M156 R:R:Q182 12.23 0 No Yes 4 6 2 1
R:R:N157 R:R:Q182 7.92 1 No Yes 7 6 2 1
R:R:T160 R:R:V178 11.11 1 No No 4 4 1 2
R:R:Q182 R:R:T160 5.67 1 Yes No 6 4 1 1
R:R:C164 R:R:C175 7.28 0 No No 6 8 1 2
R:R:D179 R:R:Y245 11.49 1 No Yes 3 4 1 1
R:R:W241 R:R:Y240 9.65 1 Yes Yes 4 3 1 2
R:R:L244 R:R:Y240 9.38 1 No Yes 3 3 2 2
R:R:L244 R:R:W241 4.56 1 No Yes 3 4 2 1
R:R:W246 R:R:Y245 3.86 0 No Yes 4 4 2 1
R:R:I186 R:R:S238 3.1 0 No No 7 7 2 1
R:R:M180 R:R:Y245 2.39 0 No Yes 3 4 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9DQJ_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.17
Number of Linked Nodes 233
Number of Links 258
Number of Hubs 29
Number of Links mediated by Hubs 117
Number of Communities 8
Number of Nodes involved in Communities 45
Number of Links involved in Communities 55
Path Summary
Number Of Nodes in MetaPath 84
Number Of Links MetaPath 83
Number of Shortest Paths 37112
Length Of Smallest Path 3
Average Path Length 13.3169
Length of Longest Path 32
Minimum Path Strength 1.465
Average Path Strength 6.13445
Maximum Path Strength 26.015
Minimum Path Correlation 0.7
Average Path Correlation 0.923278
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 5.26316
Average % Of Corr. Nodes 47.1329
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 39.8164
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeA1B
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeA1B
Name1-deoxy-alpha-L-xylulofuranose-1,2-borate
Synonyms
Identifier
FormulaC5 H10 B O6
Molecular Weight176.94
SMILES
PubChem118797262
Formal Charge-1
Total Atoms22
Total Chiral Atoms3
Total Bonds23
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ8TDS7
Sequence
>9DQJ_nogp_Chain_R
STVHTAYLV LSSLAMFTC LCGMAGNSM VIWLLPFCI YILNLAAAD 
LLFLFSMAS TLSLETQPL VNTTDKVHE LMKRLMYFA YTVGLSLLT 
AISTQRCLS VLFPIWFKC HRPRHLSAW VCGLLWTLC LLMNGLTSS 
FCSKFLKFN EDRCFRVDM VQAALIMGV LTPVMTLSS LTLFVWVRR 
SSQQWRRQP TRLFVVVLA SVLVFLICS LPLSIYWFV LYWLSLPPE 
MQVLCFSLS RLSSSVSSS ANPVIYFLV


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
9DQHAOrphanOrphanMRGPRDHomo sapiensEP-2825-chim(NtGi1-Gs-CtGq)/β1/γ22.922024-12-11doi.org/10.1016/j.celrep.2024.114942
9DQH (No Gprot) AOrphanOrphanMRGPRDHomo sapiensEP-2825-2.922024-12-11doi.org/10.1016/j.celrep.2024.114942
9DQJAOrphanOrphanMRGPRDHomo sapiensEP-3945-chim(NtGi1-Gs-CtGq)/β1/γ22.92024-12-11doi.org/10.1016/j.celrep.2024.114942
9DQJ (No Gprot) AOrphanOrphanMRGPRDHomo sapiensEP-3945-2.92024-12-11doi.org/10.1016/j.celrep.2024.114942
7Y12AOrphanOrphanMRGPRDHomo sapiensβ-Alanine-Gi1/β1/γ23.12022-07-20doi.org/10.1038/s42003-022-03668-3
7Y12 (No Gprot) AOrphanOrphanMRGPRDHomo sapiensβ-Alanine-3.12022-07-20doi.org/10.1038/s42003-022-03668-3
7Y13AOrphanOrphanMRGPRDHomo sapiens---3.12022-07-20doi.org/10.1038/s42003-022-03668-3
7Y14AOrphanOrphanMRGPRDHomo sapiensβ-Alanine--3.22022-07-20doi.org/10.1038/s42003-022-03668-3
7Y15AOrphanOrphanMRGPRDHomo sapiens--Gi1/β1/γ22.92022-07-20doi.org/10.1038/s42003-022-03668-3
7Y15 (No Gprot) AOrphanOrphanMRGPRDHomo sapiens--2.92022-07-20doi.org/10.1038/s42003-022-03668-3




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9DQJ_nogp.zip



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