Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 9.3351010
2R:R:M35 2.425404
3R:R:C38 2.935406
4R:R:F61 7.55438
5R:R:Y64 6.835608
6R:R:D72 7.2125449
7R:R:E86 5.7525453
8R:R:R103 7.165464
9R:R:M105 4.855404
10R:R:Y106 9.9825413
11R:R:F107 5.84415
12R:R:Y109 7.25408
13R:R:V111 6.55517
14R:R:I119 5.8575439
15R:R:Q122 4.458539
16R:R:L128 5.668576
17R:R:R137 7.2975439
18R:R:Q182 7.878516
19R:R:L190 4.405408
20R:R:W212 5.5325423
21R:R:P216 6.305427
22R:R:F220 6.815425
23R:R:F230 7.1675409
24R:R:Y240 8.7925413
25R:R:W241 12.4325414
26R:R:Y245 6.755414
27R:R:R262 5.98286754
28R:R:S268 4.415409
29R:R:Y276 5.854509
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:Y106 39.687315.47YesYes103
2R:R:M105 R:R:Y106 41.23798.38YesYes043
3R:R:M105 R:R:M79 1005.78YesNo045
4R:R:M79 R:R:R262 51.23984.96NoYes054
5R:R:R262 R:R:Y27 22.65013.09YesNo043
6R:R:V255 R:R:Y27 20.888111.36NoNo013
7R:R:V23 R:R:V255 19.0621.6NoNo011
8L:L:?1 R:R:W241 15.877527.8YesYes104
9R:R:W241 R:R:Y240 14.00659.65YesYes143
10R:R:F258 R:R:Y240 13.66058.25NoYes033
11R:R:F258 R:R:R262 13.66054.28NoYes034
12R:R:C38 R:R:M79 67.05973.24YesNo065
13R:R:C38 R:R:S266 17.17181.72YesNo066
14R:R:C38 R:R:L76 46.10113.17YesNo067
15R:R:L76 R:R:S269 44.627410.51NoNo079
16R:R:D72 R:R:S269 43.14095.89YesNo099
17R:R:D72 R:R:N45 25.94356.73YesNo099
18R:R:L73 R:R:N45 22.65019.61NoNo079
19R:R:I49 R:R:L73 17.61392.85NoNo077
20R:R:A69 R:R:I49 14.19243.25NoNo097
21R:R:A69 R:R:V48 12.46243.39NoNo099
22R:R:F277 R:R:V48 10.71955.24NoNo079
23L:L:?1 R:R:Q182 50.65037.9YesYes106
24R:R:N157 R:R:Q182 20.83687.92NoYes176
25R:R:F107 R:R:N157 20.22179.67YesNo157
26R:R:F107 R:R:W150 13.89766.01YesNo159
27R:R:N67 R:R:W150 17.69085.65NoNo099
28R:R:C146 R:R:N67 14.615211.02NoNo079
29R:R:C146 R:R:Y64 13.42354.03NoYes078
30R:R:Q122 R:R:Y64 27.05849.02YesYes098
31R:R:P60 R:R:Q122 13.23761.58NoYes079
32L:L:?1 R:R:S238 28.21173.96YesNo007
33R:R:S238 R:R:Y109 29.25615.09NoYes078
34R:R:L113 R:R:Y109 93.74647.03NoYes088
35R:R:F230 R:R:L113 93.43244.87YesNo098
36R:R:F230 R:R:L116 72.93524.87YesNo099
37R:R:L116 R:R:Y276 72.26255.86NoYes099
38R:R:I65 R:R:Y276 20.68943.63NoYes089
39R:R:F61 R:R:I65 19.715512.56YesNo088
40R:R:I119 R:R:Y276 46.7296.04YesYes099
41R:R:F61 R:R:I119 19.7868.79YesYes389
42R:R:D72 R:R:N272 15.85196.73YesNo499
43R:R:Q182 R:R:T110 17.83175.67YesNo166
44R:R:C153 R:R:T110 16.92195.07NoNo086
45R:R:F75 R:R:M105 73.65933.73NoYes064
46R:R:F75 R:R:Y109 74.65245.16NoYes068
47R:R:E86 R:R:R262 25.61035.82YesYes534
48R:R:E86 R:R:T82 10.36075.64YesNo033
49R:R:E86 R:R:H98 14.51274.92YesNo035
50R:R:H98 R:R:L85 12.70586.43NoNo053
51R:R:L85 R:R:T94 10.6174.42NoNo031
52R:R:K102 R:R:Y106 21.27898.36NoYes033
53R:R:K102 R:R:R103 19.67718.66NoYes034
54R:R:C153 R:R:S114 13.7313.44NoNo087
55R:R:F230 R:R:M194 55.641712.44YesNo098
56R:R:M194 R:R:S120 54.18086.13NoNo089
57R:R:S120 R:R:S197 24.49544.89NoNo098
58R:R:S120 R:R:S198 31.35774.89NoNo098
59R:R:C124 R:R:S197 21.04825.16NoNo088
60R:R:C124 R:R:L128 17.48574.76NoYes786
61R:R:Q122 R:R:R137 41.60953.5YesYes399
62R:R:R137 R:R:W132 19.830810YesNo096
63R:R:H136 R:R:W132 13.26972.12NoNo066
64R:R:L141 R:R:R137 19.54896.07NoYes059
65R:R:L141 R:R:P138 16.55673.28NoNo058
66R:R:P138 R:R:W144 13.26971.35NoNo085
67R:R:Q182 R:R:T160 15.17275.67YesNo064
68R:R:T160 R:R:V178 13.73111.11NoNo044
69R:R:L159 R:R:V178 12.05872.98NoNo064
70R:R:F163 R:R:L159 10.37367.31NoNo046
71R:R:S198 R:R:V223 24.60433.23NoNo088
72R:R:L224 R:R:V223 23.13062.98NoNo058
73R:R:F202 R:R:L224 21.38143.65NoNo055
74R:R:F202 R:R:F220 17.812515NoYes255
75R:R:F220 R:R:P216 14.32054.33YesYes257
76R:R:N272 R:R:S268 14.19244.47NoYes099
77R:R:I186 R:R:S238 12.39193.1NoNo077
78R:R:E252 R:R:V23 12.82121.43NoNo021
79R:R:E252 R:R:P251 10.7266.29NoNo022
80R:R:I119 R:R:Y64 26.22544.84YesYes098
81R:R:F61 R:R:Q122 36.96423.51YesYes389
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:Y106 15.47 1 Yes Yes 0 3 0 1
L:L:?1 R:R:F170 3.21 1 Yes No 0 1 0 1
L:L:?1 R:R:D179 15.22 1 Yes No 0 3 0 1
L:L:?1 R:R:Q182 7.9 1 Yes Yes 0 6 0 1
L:L:?1 R:R:A183 4.16 1 Yes No 0 5 0 1
L:L:?1 R:R:S238 3.96 1 Yes No 0 7 0 1
L:L:?1 R:R:W241 27.8 1 Yes Yes 0 4 0 1
L:L:?1 R:R:F242 3.21 1 Yes No 0 5 0 1
L:L:?1 R:R:Y245 9.28 1 Yes Yes 0 4 0 1
R:R:K102 R:R:Y106 8.36 0 No Yes 3 3 2 1
R:R:M105 R:R:Y106 8.38 0 Yes Yes 4 3 2 1
R:R:W241 R:R:Y106 7.72 1 Yes Yes 4 3 1 1
R:R:S238 R:R:Y109 5.09 0 No Yes 7 8 1 2
R:R:N157 R:R:T110 10.24 1 No No 7 6 2 2
R:R:Q182 R:R:T110 5.67 1 Yes No 6 6 1 2
R:R:M156 R:R:Q182 12.23 0 No Yes 4 6 2 1
R:R:N157 R:R:Q182 7.92 1 No Yes 7 6 2 1
R:R:Q182 R:R:T160 5.67 1 Yes No 6 4 1 2
R:R:C164 R:R:C175 7.28 0 No No 6 8 1 2
R:R:D179 R:R:Y245 11.49 1 No Yes 3 4 1 1
R:R:W241 R:R:Y240 9.65 1 Yes Yes 4 3 1 2
R:R:L244 R:R:Y240 9.38 1 No Yes 3 3 2 2
R:R:L244 R:R:W241 4.56 1 No Yes 3 4 2 1
R:R:W246 R:R:Y245 3.86 0 No Yes 4 4 2 1
L:L:?1 R:R:C164 3.14 1 Yes No 0 6 0 1
R:R:I186 R:R:S238 3.1 0 No No 7 7 2 1
R:R:M180 R:R:Y245 2.39 0 No Yes 3 4 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9DQJ_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.17
Number of Linked Nodes 233
Number of Links 256
Number of Hubs 29
Number of Links mediated by Hubs 115
Number of Communities 8
Number of Nodes involved in Communities 42
Number of Links involved in Communities 50
Path Summary
Number Of Nodes in MetaPath 82
Number Of Links MetaPath 81
Number of Shortest Paths 36451
Length Of Smallest Path 3
Average Path Length 13.3769
Length of Longest Path 32
Minimum Path Strength 1.465
Average Path Strength 5.99913
Maximum Path Strength 21.51
Minimum Path Correlation 0.7
Average Path Correlation 0.923287
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 5.26316
Average % Of Corr. Nodes 47.6248
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 38.9378
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
Code_L_
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
Code_L_
Name
Synonyms
Identifier
Formula
Molecular Weight
SMILES
PubChem
Formal Charge
Total Atoms
Total Chiral Atoms
Total Bonds
Total Aromatic Bonds

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ8TDS7
Sequence
>9DQJ_nogp_Chain_R
STVHTAYLV LSSLAMFTC LCGMAGNSM VIWLLPFCI YILNLAAAD 
LLFLFSMAS TLSLETQPL VNTTDKVHE LMKRLMYFA YTVGLSLLT 
AISTQRCLS VLFPIWFKC HRPRHLSAW VCGLLWTLC LLMNGLTSS 
FCSKFLKFN EDRCFRVDM VQAALIMGV LTPVMTLSS LTLFVWVRR 
SSQQWRRQP TRLFVVVLA SVLVFLICS LPLSIYWFV LYWLSLPPE 
MQVLCFSLS RLSSSVSSS ANPVIYFLV


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7Y12AOrphanOrphanMRGPRDHomo sapiensβ-Alanine-Gi1/β1/γ23.12022-07-20doi.org/10.1038/s42003-022-03668-3
7Y12 (No Gprot) AOrphanOrphanMRGPRDHomo sapiensβ-Alanine-3.12022-07-20doi.org/10.1038/s42003-022-03668-3
7Y13AOrphanOrphanMRGPRDHomo sapiens---3.12022-07-20doi.org/10.1038/s42003-022-03668-3
7Y14AOrphanOrphanMRGPRDHomo sapiensβ-Alanine--3.22022-07-20doi.org/10.1038/s42003-022-03668-3
7Y15AOrphanOrphanMRGPRDHomo sapiens--Gi1/β1/γ22.92022-07-20doi.org/10.1038/s42003-022-03668-3
7Y15 (No Gprot) AOrphanOrphanMRGPRDHomo sapiens--2.92022-07-20doi.org/10.1038/s42003-022-03668-3
9DQHAOrphanOrphanMRGPRDHomo sapiensEP-2825-chim(NtGi1-Gs-CtGq)/β1/γ22.922024-12-11doi.org/10.1016/j.celrep.2024.114942
9DQH (No Gprot) AOrphanOrphanMRGPRDHomo sapiensEP-2825-2.922024-12-11doi.org/10.1016/j.celrep.2024.114942
9DQJAOrphanOrphanMRGPRDHomo sapiensEP-3945-chim(NtGi1-Gs-CtGq)/β1/γ22.92024-12-11doi.org/10.1016/j.celrep.2024.114942
9DQJ (No Gprot) AOrphanOrphanMRGPRDHomo sapiensEP-3945-2.92024-12-11doi.org/10.1016/j.celrep.2024.114942




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Download 9DQJ_nogp.zip



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