Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 9.535831210
2R:R:V23 4.3875401
3R:R:L52 4.26458
4R:R:Y64 8.63508
5R:R:L68 4.9675429
6R:R:F75 4.868536
7R:R:M79 6.028535
8R:R:R103 6.618514
9R:R:F107 5.252545
10R:R:Y109 7.5575408
11R:R:L116 5.755429
12R:R:L128 5.87476
13R:R:R137 7.33469
14R:R:W150 6.6275449
15R:R:C153 5.1975448
16R:R:N157 7.5225447
17R:R:F163 7.165404
18R:R:C164 5.0975416
19R:R:D179 10.8275413
20R:R:W204 4.635476
21R:R:P216 3.97497
22R:R:F230 6.192529
23R:R:Y240 7.5475403
24R:R:Y245 6.442514
25R:R:R262 7.74404
26R:R:S268 3.985409
27R:R:Y276 5.12333629
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:S238 76.79144.79YesNo007
2R:R:S238 R:R:Y109 78.60117.63NoYes078
3R:R:F75 R:R:Y109 88.58736.19YesYes068
4R:R:F75 R:R:M79 60.24293.73YesYes365
5R:R:M79 R:R:S266 33.25184.6YesNo056
6R:R:A34 R:R:S266 22.23851.71NoNo066
7R:R:A34 R:R:L263 20.64.73NoNo065
8R:R:L263 R:R:L30 17.25772.77NoNo055
9R:R:L30 R:R:S259 13.85837.51NoNo053
10R:R:L256 R:R:S259 12.30941.5NoNo023
11R:R:E252 R:R:L256 10.57315.3NoNo022
12R:R:M79 R:R:R262 31.336111.17YesYes054
13R:R:S266 R:R:T37 10.75246.4NoNo067
14R:R:F75 R:R:S269 29.6655.28YesNo369
15R:R:D72 R:R:S269 26.42868.83NoNo399
16R:R:D72 R:R:N45 25.091712.12NoNo099
17R:R:A69 R:R:N45 17.60014.69NoNo099
18R:R:A69 R:R:V48 15.91263.39NoNo099
19R:R:F277 R:R:V48 12.48883.93NoNo079
20R:R:L113 R:R:Y109 1009.38NoYes088
21R:R:F230 R:R:L113 99.68218.53YesNo098
22R:R:F230 R:R:L116 73.05787.31YesYes299
23R:R:L116 R:R:Y276 54.47134.69YesYes299
24R:R:R123 R:R:Y276 40.96364.12NoYes299
25R:R:I119 R:R:R123 37.80066.26NoNo299
26R:R:I119 R:R:Y64 36.57784.84NoYes098
27R:R:Q122 R:R:Y64 25.083610.15NoYes098
28L:L:?1 R:R:Q182 25.42594.25YesNo006
29R:R:N157 R:R:Q182 20.616310.56YesNo076
30R:R:F107 R:R:N157 14.02146.04YesYes457
31R:R:L116 R:R:N272 22.35276.87YesNo299
32R:R:A108 R:R:F75 14.77954.16NoYes076
33R:R:A108 R:R:L74 13.0924.73NoNo076
34R:R:L104 R:R:L74 11.38832.77NoNo056
35L:L:?1 R:R:R103 27.01565.82YesYes104
36R:R:E99 R:R:R103 17.4379.3NoYes154
37R:R:E99 R:R:K166 15.91264.05NoNo053
38R:R:F167 R:R:K166 14.20892.48NoNo013
39R:R:D95 R:R:F167 10.74433.58NoNo011
40R:R:F230 R:R:M194 55.05834.98YesNo098
41R:R:M194 R:R:S120 53.79479.2NoNo089
42R:R:S120 R:R:S197 28.8094.89NoNo098
43R:R:C124 R:R:S197 27.23573.44NoNo088
44R:R:C124 R:R:L128 25.6464.76NoYes086
45R:R:F129 R:R:L128 15.89639.74NoYes056
46R:R:F129 R:R:L125 12.47252.44NoNo056
47R:R:L125 R:R:T121 10.73612.95NoNo066
48R:R:S120 R:R:S198 28.39333.26NoNo098
49R:R:S198 R:R:V223 21.9943.23NoNo088
50R:R:L201 R:R:V223 20.4944.47NoNo088
51R:R:Q122 R:R:R137 19.855.84NoYes699
52L:L:?1 R:R:C164 19.09195.06YesYes106
53R:R:C164 R:R:T160 17.92613.38YesNo064
54R:R:T160 R:R:V178 16.206111.11NoNo044
55R:R:L159 R:R:V178 14.46974.47NoNo064
56R:R:F163 R:R:L159 12.7176.09YesNo046
57R:R:L201 R:R:L219 17.28214.15NoNo087
58R:R:L219 R:R:V205 15.74965.96NoNo076
59R:R:S226 R:R:Y276 13.23066.36NoYes079
60R:R:S226 R:R:V222 11.38831.62NoNo077
61R:R:N272 R:R:S268 24.44774.47NoYes099
62R:R:C233 R:R:S268 16.55661.72NoYes079
63R:R:C233 R:R:S264 10.46713.44NoNo077
64R:R:F258 R:R:R262 17.24148.55NoYes034
65R:R:F258 R:R:Y240 15.733310.32NoYes033
66R:R:L244 R:R:Y240 10.736110.55NoYes033
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:R103 5.82 1 Yes Yes 0 4 0 1
L:L:?1 R:R:Y106 18.71 1 Yes No 0 3 0 1
L:L:?1 R:R:C164 5.06 1 Yes Yes 0 6 0 1
L:L:?1 R:R:C175 6.33 1 Yes No 0 8 0 1
L:L:?1 R:R:D179 27.07 1 Yes Yes 0 3 0 1
L:L:?1 R:R:Q182 4.25 1 Yes No 0 6 0 1
L:L:?1 R:R:A183 6.29 1 Yes No 0 5 0 1
L:L:?1 R:R:S238 4.79 1 Yes No 0 7 0 1
L:L:?1 R:R:W241 22.72 1 Yes No 0 4 0 1
L:L:?1 R:R:F242 4.86 1 Yes No 0 5 0 1
L:L:?1 R:R:Y245 5.61 1 Yes Yes 0 4 0 1
R:R:E99 R:R:R103 9.3 1 No Yes 5 4 2 1
R:R:E99 R:R:S165 8.62 1 No No 5 3 2 2
R:R:K102 R:R:R103 7.43 0 No Yes 3 4 2 1
R:R:K102 R:R:Y106 9.55 0 No No 3 3 2 1
R:R:R103 R:R:S161 5.27 1 Yes No 4 3 1 2
R:R:R103 R:R:S165 5.27 1 Yes No 4 3 1 2
R:R:W241 R:R:Y106 7.72 1 No No 4 3 1 1
R:R:S238 R:R:Y109 7.63 0 No Yes 7 8 1 2
R:R:M156 R:R:Q182 12.23 0 No No 4 6 2 1
R:R:N157 R:R:Q182 10.56 4 Yes No 7 6 2 1
R:R:C164 R:R:C175 7.28 1 Yes No 6 8 1 1
R:R:C164 R:R:D179 4.67 1 Yes Yes 6 3 1 1
R:R:C175 R:R:D179 4.67 1 No Yes 8 3 1 1
R:R:F176 R:R:M180 13.68 1 No No 2 3 2 2
R:R:F176 R:R:Y245 10.32 1 No Yes 2 4 2 1
R:R:F176 R:R:W246 5.01 1 No No 2 4 2 2
R:R:D179 R:R:Y245 6.9 1 Yes Yes 3 4 1 1
R:R:M180 R:R:Y245 3.59 1 No Yes 3 4 2 1
R:R:M180 R:R:W246 4.65 1 No No 3 4 2 2
R:R:F242 R:R:M187 4.98 0 No No 5 7 1 2
R:R:W246 R:R:Y245 5.79 1 No Yes 4 4 2 1
R:R:C164 R:R:T160 3.38 1 Yes No 6 4 1 2
R:R:I186 R:R:S238 3.1 0 No No 7 7 2 1
L:L:?1 R:R:F170 2.92 1 Yes No 0 1 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9DQH_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.39
Number of Linked Nodes 236
Number of Links 257
Number of Hubs 27
Number of Links mediated by Hubs 107
Number of Communities 9
Number of Nodes involved in Communities 50
Number of Links involved in Communities 65
Path Summary
Number Of Nodes in MetaPath 67
Number Of Links MetaPath 66
Number of Shortest Paths 25332
Length Of Smallest Path 3
Average Path Length 12.6024
Length of Longest Path 27
Minimum Path Strength 1.225
Average Path Strength 5.95971
Maximum Path Strength 24.895
Minimum Path Correlation 0.7
Average Path Correlation 0.923861
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.7619
Average % Of Corr. Nodes 50.833
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 37.4339
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process• cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cell communication   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • regulation of systemic arterial blood pressure by renin-angiotensin   • multicellular organismal process   • regulation of systemic arterial blood pressure by hormone   • system process   • regulation of systemic arterial blood pressure mediated by a chemical signal   • negative regulation of blood pressure   • renal control of peripheral vascular resistance involved in regulation of systemic arterial blood pressure   • circulatory system process   • angiotensin-mediated vasodilation involved in regulation of systemic arterial blood pressure   • negative regulation of systemic arterial blood pressure   • regulation of biological quality   • blood vessel diameter maintenance   • renal system process involved in regulation of systemic arterial blood pressure   • blood circulation   • regulation of tube diameter   • maintenance of blood vessel diameter homeostasis by renin-angiotensin   • renal system process   • regulation of blood pressure   • regulation of tube size   • regulation of systemic arterial blood pressure   • endocrine process   • vascular process in circulatory system   • vasodilation   • regulation of anatomical structure size   • cell periphery   • cellular anatomical structure   • plasma membrane   • membrane   • extracellular region   • extracellular space   • protein-containing complex binding   • binding   • G-protein beta/gamma-subunit complex binding   • guanyl nucleotide binding   • GTP binding   • nucleotide binding   • guanyl ribonucleotide binding   • purine ribonucleotide binding   • purine ribonucleoside triphosphate binding   • nucleoside phosphate binding   • ion binding   • purine nucleotide binding   • anion binding   • heterocyclic compound binding   • carbohydrate derivative binding   • ribonucleotide binding   • small molecule binding   • cation binding   • metal ion binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • protein binding   • enzyme binding   • GTPase binding   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • cell population proliferation   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • response to oxygen-containing compound   • cellular response to oxygen-containing compound   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to chemical stimulus   • cellular response to alcohol   • response to hormone   • response to chemical   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • phospholipase C-activating G protein-coupled receptor signaling pathway   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • response to nitrogen compound   • cellular response to monoamine stimulus   • synaptic signaling   • cellular response to acetylcholine   • cell-cell signaling   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • extracellular exosome   • membrane-bounded organelle   • extracellular vesicle   • extracellular organelle   • organelle   • vesicle   • extracellular membrane-bounded organelle   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • neuron projection   • photoreceptor disc membrane   • photoreceptor outer segment   • plasma membrane bounded cell projection   • cell projection   • photoreceptor cell cilium   • organelle membrane   • intracellular anatomical structure   • cytoplasm   • cytosol   • vacuolar membrane   • lytic vacuole   • vacuole   • intracellular membrane-bounded organelle   • intracellular organelle   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • lysosome   • synapse   • cell junction   • G-protein beta-subunit binding   • fibroblast proliferation
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeA1B
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeA1B
Name1-deoxy-alpha-L-xylulofuranose-1,2-borate
Synonyms
Identifier
FormulaC5 H10 B O6
Molecular Weight176.94
SMILES
PubChem118797262
Formal Charge-1
Total Atoms22
Total Chiral Atoms3
Total Bonds23
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ8TDS7
Sequence
>9DQH_nogp_Chain_R
STVHTAYLV LSSLAMFTC LCGMAGNSM VIWLLPFCI YILNLAAAD 
LLFLFSMAS TLSLETQPL VNTTDKVHE LMKRLMYFA YTVGLSLLT 
AISTQRCLS VLFPIWFKC HRPRHLSAW VCGLLWTLC LLMNGLTSS 
FCSKFLKFN EDRCFRVDM VQAALIMGV LTPVMTLSS LTLFVWVRR 
SSQQWRRQP TRLFVVVLA SVLVFLICS LPLSIYWFV LYWLSLPPE 
MQVLCFSLS RLSSSVSSS ANPVIYFLV


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
9DQJAOrphanOrphanMRGPRDHomo sapiensEP-3945-chim(NtGi1-Gs-CtGq)/β1/γ22.92024-12-1110.1016/j.celrep.2024.114942
9DQJ (No Gprot) AOrphanOrphanMRGPRDHomo sapiensEP-3945-2.92024-12-1110.1016/j.celrep.2024.114942
9DQHAOrphanOrphanMRGPRDHomo sapiensEP-2825-chim(NtGi1-Gs-CtGq)/β1/γ22.922024-12-1110.1016/j.celrep.2024.114942
9DQH (No Gprot) AOrphanOrphanMRGPRDHomo sapiensEP-2825-2.922024-12-1110.1016/j.celrep.2024.114942
7Y14AOrphanOrphanMRGPRDHomo sapiensβ-Alanine--3.22022-07-2010.1038/s42003-022-03668-3
7Y13AOrphanOrphanMRGPRDHomo sapiens---3.12022-07-2010.1038/s42003-022-03668-3
7Y15AOrphanOrphanMRGPRDHomo sapiens--Gi1/β1/γ22.92022-07-2010.1038/s42003-022-03668-3
7Y15 (No Gprot) AOrphanOrphanMRGPRDHomo sapiens--2.92022-07-2010.1038/s42003-022-03668-3
7Y12AOrphanOrphanMRGPRDHomo sapiensβ-Alanine-Gi1/β1/γ23.12022-07-2010.1038/s42003-022-03668-3
7Y12 (No Gprot) AOrphanOrphanMRGPRDHomo sapiensβ-Alanine-3.12022-07-2010.1038/s42003-022-03668-3




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9DQH_nogp.zip



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.