Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 7.836921310
2R:R:I41 3.9875406
3R:R:I50 4.1075478
4R:R:Y55 5.62406
5R:R:L69 3.555467
6R:R:H81 8.7425418
7R:R:Y92 7.16408
8R:R:W98 8.1125445
9R:R:F101 6.34544
10R:R:V116 5.9325428
11R:R:S118 4.5175417
12R:R:C121 4.8225417
13R:R:E132 5.9675469
14R:R:R133 4.26439
15R:R:C134 3.4175406
16R:R:F142 6.535404
17R:R:V159 2.65405
18R:R:P170 7.425429
19R:R:Y177 6.81167627
20R:R:W185 6.634528
21R:R:F187 7.06528
22R:R:Y188 8.385626
23R:R:I193 3.1075451
24R:R:D195 7.18451
25R:R:D198 9.7025455
26R:R:Y201 5.87526
27R:R:G209 1.77407
28R:R:N220 4.648539
29R:R:T223 3.172538
30R:R:L227 2.55438
31R:R:I272 2.275406
32R:R:Q297 6.72333618
33R:R:I298 3.668518
34R:R:Y304 5.8175409
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:H81 36.161924.5YesYes108
2R:R:H81 R:R:I298 65.25732.65YesYes188
3R:R:G40 R:R:I298 57.18043.53NoYes098
4R:R:G40 R:R:S43 55.57443.71NoNo099
5R:R:P301 R:R:S43 49.03351.78NoNo099
6R:R:A47 R:R:P301 47.3691.87NoNo099
7R:R:A47 R:R:V74 45.69295.09NoNo098
8R:R:N44 R:R:V74 21.0015.91NoNo098
9R:R:F78 R:R:N44 19.149710.87NoNo079
10R:R:F78 R:R:I41 15.41210.05NoYes076
11R:R:I48 R:R:V74 24.66864.61NoNo078
12R:R:I48 R:R:I75 21.0012.94NoNo076
13L:L:?1 R:R:Q297 75.08618.15YesYes108
14R:R:N296 R:R:Q297 1003.96NoYes098
15R:R:D300 R:R:N296 85.45234.04NoNo099
16R:R:D300 R:R:Y304 84.45379.2NoYes099
17R:R:I254 R:R:Y304 27.86318.46NoYes089
18R:R:I254 R:R:Q250 26.19285.49NoNo088
19R:R:Q250 R:R:R308 22.799721.03NoNo089
20R:R:R308 R:R:V311 15.90263.92NoNo097
21R:R:I50 R:R:V311 12.48039.22YesNo787
22R:R:G72 R:R:I75 19.14971.76NoNo086
23R:R:G72 R:R:S71 17.28673.71NoNo086
24R:R:L68 R:R:S71 15.4123NoNo066
25R:R:L68 R:R:Y55 13.52578.21NoYes066
26R:R:R133 R:R:Y304 64.35793.09YesYes099
27R:R:L251 R:R:R133 41.63993.64NoYes389
28R:R:L251 R:R:T223 43.46782.95NoYes388
29R:R:C134 R:R:T223 28.50553.38YesYes068
30R:R:C134 R:R:T138 26.96373.38YesNo067
31R:R:K139 R:R:T138 25.45113NoNo057
32R:R:F142 R:R:K139 22.390911.17YesNo045
33R:R:F142 R:R:I147 16.13045.02YesNo045
34R:R:H143 R:R:I147 13.04096.63NoNo085
35R:R:D77 R:R:Q297 12.42199.14NoYes198
36R:R:D77 R:R:L73 10.68745.43NoNo099
37R:R:P122 R:R:Q297 17.748111.05NoYes198
38R:R:C121 R:R:P122 16.04863.77YesNo179
39L:L:?1 R:R:N84 34.771913.08YesNo106
40R:R:F111 R:R:N84 33.30616.04NoNo166
41R:R:F111 R:R:I87 63.884822.61NoNo066
42R:R:I83 R:R:I87 13.14612.94NoNo056
43L:L:?1 R:R:M115 34.78954.81YesNo108
44R:R:F111 R:R:M115 33.32369.95NoNo168
45R:R:I87 R:R:V91 48.35021.54NoNo067
46R:R:F101 R:R:V91 29.06035.24YesNo447
47R:R:V91 R:R:W98 16.14211.03NoYes475
48R:R:F101 R:R:S94 19.65195.28YesNo044
49R:R:R100 R:R:S94 16.40487.91NoNo014
50R:R:E97 R:R:R100 13.14613.49NoNo041
51L:L:?1 R:R:F265 28.65154.14YesNo008
52R:R:F265 R:R:M269 26.25717.46NoNo087
53R:R:L202 R:R:M269 22.40267.07NoNo067
54R:R:L202 R:R:Y188 21.78364.69NoYes066
55R:R:Y177 R:R:Y188 25.14165.96YesYes276
56R:R:I171 R:R:Y177 20.63893.63NoYes247
57R:R:I171 R:R:S109 16.60343.1NoNo044
58R:R:D176 R:R:S109 12.46862.94NoNo034
59L:L:?1 R:R:L290 64.98285.65YesNo007
60R:R:L290 R:R:W185 64.21196.83NoYes078
61R:R:F187 R:R:W185 40.60628.02YesYes288
62R:R:F187 R:R:Y188 30.199113.41YesYes286
63R:R:F187 R:R:V116 17.41523.93YesYes288
64R:R:V116 R:R:Y177 14.66455.05YesYes287
65R:R:I113 R:R:Y177 12.17083.63NoYes257
66R:R:F187 R:R:F205 23.61746.43YesNo088
67R:R:F205 R:R:L120 23.38967.31NoNo086
68R:R:L120 R:R:L208 21.70184.15NoNo065
69R:R:N296 R:R:W262 29.17139.04NoNo099
70R:R:L123 R:R:W262 13.864422.78NoNo079
71R:R:L125 R:R:V159 14.38422.98NoYes075
72R:R:G209 R:R:L123 13.4031.71YesNo077
73R:R:A212 R:R:G209 28.02081.95NoYes077
74R:R:A212 R:R:S127 25.94171.71NoNo077
75R:R:L266 R:R:W262 14.93312.28NoNo079
76R:R:G209 R:R:L266 14.01041.71YesNo077
77R:R:S127 R:R:V215 24.06123.23NoNo075
78R:R:N220 R:R:R133 18.18026.03YesYes399
79R:R:I131 R:R:V215 19.34823.07NoNo065
80R:R:C134 R:R:C219 16.80783.64YesNo067
81R:R:L227 R:R:T223 20.50462.95YesYes388
82R:R:Y188 R:R:Y201 17.68387.94YesYes266
83R:R:I166 R:R:L204 11.08452.85NoNo064
84R:R:L204 R:R:L208 10.86264.15NoNo045
85R:R:Q180 R:R:W185 25.778210.95NoYes288
86R:R:Q180 R:R:T190 36.89779.92NoNo087
87R:R:I272 R:R:T190 35.49033.04YesNo067
88R:R:I193 R:R:I272 22.29751.47YesYes016
89R:R:D198 R:R:I193 14.45424.2YesYes551
90R:R:D195 R:R:D198 11.440815.97YesYes515
91R:R:M255 R:R:N220 16.18295.61NoYes089
92R:R:L217 R:R:M255 12.66725.65NoNo058
93R:R:H244 R:R:L227 15.12591.29NoYes088
94R:R:H244 R:R:K231 13.426414.41NoNo086
95R:R:F165 R:R:I166 11.76781.26NoNo036
96R:R:H81 R:R:Q297 31.04013.71YesYes188
97R:R:G209 R:R:L120 31.12191.71YesNo076
98R:R:C219 R:R:I131 16.18293.27NoNo076
99R:R:F187 R:R:Q180 12.50953.51YesNo288
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:S33 4.09 1 Yes No 0 7 0 1
L:L:?1 R:R:H81 24.5 1 Yes Yes 0 8 0 1
L:L:?1 R:R:N84 13.08 1 Yes No 0 6 0 1
L:L:?1 R:R:M115 4.81 1 Yes No 0 8 0 1
L:L:?1 R:R:S118 8.17 1 Yes Yes 0 7 0 1
L:L:?1 R:R:G119 3.49 1 Yes No 0 7 0 1
L:L:?1 R:R:T184 6.02 1 Yes No 0 9 0 1
L:L:?1 R:R:F265 4.14 1 Yes No 0 8 0 1
L:L:?1 R:R:L290 5.65 1 Yes No 0 7 0 1
L:L:?1 R:R:R291 6.61 1 Yes No 0 8 0 1
L:L:?1 R:R:T294 11.03 1 Yes No 0 9 0 1
L:L:?1 R:R:Q297 8.15 1 Yes Yes 0 8 0 1
R:R:D77 R:R:P122 14.49 1 No No 9 9 2 2
R:R:D77 R:R:Q297 9.14 1 No Yes 9 8 2 1
R:R:H81 R:R:T294 4.11 1 Yes No 8 9 1 1
R:R:H81 R:R:Q297 3.71 1 Yes Yes 8 8 1 1
R:R:F111 R:R:N84 6.04 1 No No 6 6 2 1
R:R:M115 R:R:N84 9.82 1 No No 8 6 1 1
R:R:T184 R:R:Y92 7.49 0 No Yes 9 8 1 2
R:R:F111 R:R:M115 9.95 1 No No 6 8 2 1
R:R:G119 R:R:S118 3.71 1 No Yes 7 7 1 1
R:R:Q297 R:R:S118 4.33 1 Yes Yes 8 7 1 1
R:R:P122 R:R:Q297 11.05 1 No Yes 9 8 2 1
R:R:S182 R:R:T184 6.4 0 No No 8 9 2 1
R:R:S182 R:R:W185 4.94 0 No Yes 8 8 2 2
R:R:L290 R:R:W185 6.83 0 No Yes 7 8 1 2
R:R:F265 R:R:M269 7.46 0 No No 8 7 1 2
R:R:A289 R:R:F265 4.16 0 No No 7 8 2 1
R:R:L287 R:R:R291 10.93 0 No No 6 8 2 1
R:R:N296 R:R:Q297 3.96 0 No Yes 9 8 2 1
R:R:H81 R:R:I298 2.65 1 Yes Yes 8 8 1 2
L:L:?1 R:R:A293 2.14 1 Yes No 0 8 0 1
R:R:F32 R:R:R291 2.14 0 No No 4 8 2 1
R:R:G80 R:R:S118 1.86 0 No Yes 8 7 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8IUM_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.85
Number of Linked Nodes 277
Number of Links 300
Number of Hubs 34
Number of Links mediated by Hubs 133
Number of Communities 7
Number of Nodes involved in Communities 55
Number of Links involved in Communities 76
Path Summary
Number Of Nodes in MetaPath 100
Number Of Links MetaPath 99
Number of Shortest Paths 45506
Length Of Smallest Path 3
Average Path Length 13.5455
Length of Longest Path 32
Minimum Path Strength 1.24
Average Path Strength 5.99786
Maximum Path Strength 18.79
Minimum Path Correlation 0.7
Average Path Correlation 0.925073
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.84615
Average % Of Corr. Nodes 51.61
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 35.6462
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeS2F
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeS2F
Name(~{Z})-7-[(1~{R},2~{R},3~{R},5~{S})-2-[(~{E})-3,3-bis(fluoranyl)-4-phenoxy-but-1-enyl]-3,5-bis(oxidanyl)cyclopentyl]hept-5-enoic acid
SynonymsTafluprost acid
Identifier
FormulaC22 H28 F2 O5
Molecular Weight410.452
SMILES
PubChem9978917
Formal Charge0
Total Atoms57
Total Chiral Atoms4
Total Bonds58
Total Aromatic Bonds6

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP43088
Sequence
>8IUM_nogp_Chain_R
SVFFSVIFM TVGILSNSL AIAILMKAY QRFRQKSKA SFLLLASGL 
VITDFFGHL INGAIAVFV YASDKEWIR FDQSNVLCS IFGICMVFS 
GLCPLLLGS VMAIERCIG VTKPIFHST KITSKHVKM MLSGVCLFA 
VFIALLPIL GHRDYKIQA SRTWCFYNT EDIKDWEDR FYLLLFSFL 
GLLALGVSL LCNAITGIT LLRVKFKSQ QHGRSHHLE MVIQLLAIM 
CVSCICWSP FLVTMANIG INGNHSLET CETTLFALR MATWNQILD 
PWVYILLRK AVLKNLYKL ASQCC


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8XJKALipidProstanoidFP-alphaHomo sapiensCloprosetnol-chim(NtGi1-Gs-CtGq)/β1/γ22.632024-02-28doi.org/10.1016/j.celrep.2024.113893
8XJK (No Gprot) ALipidProstanoidFP-alphaHomo sapiensCloprosetnol-2.632024-02-28doi.org/10.1016/j.celrep.2024.113893
8XJMALipidProstanoidFP-alphaHomo sapiensLatanoprost-chim(NtGi2-Gs-CtGq)/β1/γ22.852024-02-28To be published
8XJM (No Gprot) ALipidProstanoidFP-alphaHomo sapiensLatanoprost-2.852024-02-28To be published
8XJLALipidProstanoidFP-alphaHomo sapiensPGF2-α-chim(NtGi2-Gs-CtGq)/β1/γ22.772024-02-28To be published
8XJL (No Gprot) ALipidProstanoidFP-alphaHomo sapiensPGF2-α-2.772024-02-28To be published
8IQ6ALipidProstanoidFP-alphaHomo sapiensLatanoprost-chim(NtGi1-Gs-CtGq)/β1/γ23.42024-01-3110.1038/s41467-023-43922-8
8IQ6 (No Gprot) ALipidProstanoidFP-alphaHomo sapiensLatanoprost-3.42024-01-3110.1038/s41467-023-43922-8
8IQ4ALipidProstanoidFP-alphaHomo sapiensCarboprost-chim(NtGi1-Gs-CtGq)/β1/γ22.72024-01-3110.1038/s41467-023-43922-8
8IQ4 (No Gprot) ALipidProstanoidFP-alphaHomo sapiensCarboprost-2.72024-01-3110.1038/s41467-023-43922-8
8IUMALipidProstanoidFP-alphaHomo sapiensTafluprost acid-chim(NtGi1-Gs-CtGq)/β1/γ23.142023-07-1210.1038/s41467-023-38411-x
8IUM (No Gprot) ALipidProstanoidFP-alphaHomo sapiensTafluprost acid-3.142023-07-1210.1038/s41467-023-38411-x
8IULALipidProstanoidFP-alphaHomo sapiensLatanoprost-chim(NtGi1-Gs-CtGq)/β1/γ22.782023-07-1210.1038/s41467-023-38411-x
8IUL (No Gprot) ALipidProstanoidFP-alphaHomo sapiensLatanoprost-2.782023-07-1210.1038/s41467-023-38411-x
8IUKALipidProstanoidFP-alphaHomo sapiensPGF2-α-chim(NtGi1-Gs-CtGq)/β1/γ22.672023-07-1210.1038/s41467-023-38411-x
8IUK (No Gprot) ALipidProstanoidFP-alphaHomo sapiensPGF2-α-2.672023-07-1210.1038/s41467-023-38411-x




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8IUM_nogp.zip



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