Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 6.811881610
2R:R:F36 6.155618
3R:R:V39 2.47416
4R:R:I50 4.1075448
5R:R:Y55 5.858556
6R:R:L67 3.0725458
7R:R:H81 4.865418
8R:R:N84 6.3025416
9R:R:Y92 6.456518
10R:R:W98 5.63435
11R:R:F101 5.508534
12R:R:F111 7.6525416
13R:R:M115 4.8475418
14R:R:V116 4.332518
15R:R:C121 5.7225477
16R:R:R133 7.39529
17R:R:F142 6.2275404
18R:R:I147 3.6925405
19R:R:Y177 6.41333617
20R:R:T184 6.8225419
21R:R:W185 5.22375818
22R:R:F187 5.72167618
23R:R:Y188 6.715616
24R:R:E197 4.795492
25R:R:Y201 2.648506
26R:R:F205 4.0825408
27R:R:N220 5.065489
28R:R:T223 3.172508
29R:R:H244 5.2425408
30R:R:Q250 9.9875428
31R:R:W262 7.94143719
32R:R:F265 4.5225408
33R:R:L266 3.705407
34R:R:R291 10.3925418
35R:R:T294 7.7375419
36R:R:W295 7.514515
37R:R:N296 8.195419
38R:R:Q297 7.2325418
39R:R:I298 5.834518
40R:R:Y304 6.29629
41R:R:R308 9.1725409
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:F36 15.95373.39YesYes108
2L:L:?1 R:R:T294 10.083615.4YesYes109
3L:L:?1 R:R:G85 1003.57YesNo007
4R:R:G85 R:R:M37 99.06883.49NoNo077
5R:R:I41 R:R:M37 98.59552.92NoNo067
6R:R:F78 R:R:I41 97.633410.05NoNo076
7R:R:L299 R:R:W295 10.7375.69NoYes075
8R:R:F78 R:R:N44 96.65088.46NoNo079
9R:R:N44 R:R:V74 96.15185.91NoNo098
10R:R:A47 R:R:V74 86.8815.09NoNo098
11R:R:A47 R:R:P301 86.28941.87NoNo099
12R:R:I48 R:R:V74 17.24244.61NoNo078
13R:R:I48 R:R:M52 11.99494.37NoNo074
14R:R:D300 R:R:P301 85.69264.83NoNo099
15R:R:D300 R:R:Y304 77.466212.64NoYes099
16R:R:M52 R:R:Q56 10.92992.72NoNo044
17R:R:R133 R:R:Y304 58.13512.06YesYes299
18R:R:E132 R:R:R133 52.78464.65NoYes299
19R:R:E132 R:R:H143 52.388413.54NoNo098
20R:R:H143 R:R:I147 50.74215.3NoYes085
21R:R:D300 R:R:L73 13.05475.43NoNo099
22L:L:?1 R:R:N84 12.928613.39YesYes106
23R:R:F111 R:R:N84 11.5016.04YesYes166
24R:R:F111 R:R:I87 41.538318.84YesNo066
25R:R:I83 R:R:I87 10.09392.94NoNo056
26L:L:?1 R:R:M115 44.71257.88YesYes108
27R:R:F111 R:R:M115 15.44183.73YesYes168
28L:L:?1 R:R:W185 48.4452.38YesYes108
29R:R:F111 R:R:W185 16.45272YesYes168
30R:R:I87 R:R:V91 29.9011.54NoNo067
31R:R:F101 R:R:V91 17.96275.24YesNo347
32R:R:F101 R:R:S94 12.09775.28YesNo044
33R:R:R100 R:R:S94 10.09397.91NoNo014
34R:R:F187 R:R:M115 37.72864.98YesYes188
35R:R:F187 R:R:V116 21.03673.93YesYes188
36R:R:V116 R:R:Y177 13.39945.05YesYes187
37R:R:I171 R:R:Y177 13.50233.63NoYes147
38R:R:I171 R:R:S109 10.84243.1NoNo044
39R:R:F187 R:R:W185 39.27974.01YesYes188
40R:R:F187 R:R:Y188 52.259813.41YesYes186
41R:R:Y177 R:R:Y188 13.05984.96YesYes176
42R:R:F187 R:R:F205 12.32412.14YesYes088
43R:R:F205 R:R:L120 13.06758.53YesNo086
44L:L:?1 R:R:W262 21.17042.38YesYes109
45R:R:I166 R:R:L120 15.83542.85NoNo066
46R:R:F142 R:R:I147 45.00325.02YesYes045
47R:R:F142 R:R:I135 38.8272.51YesNo045
48R:R:I131 R:R:I135 37.92412.94NoNo065
49R:R:C219 R:R:I131 28.61223.27NoNo076
50R:R:C134 R:R:C219 27.65273.64NoNo067
51R:R:C134 R:R:T223 24.74343.38NoYes068
52R:R:Y188 R:R:Y201 25.16273.97YesYes066
53R:R:E197 R:R:Y201 17.51512.24YesYes026
54R:R:E197 R:R:R175 13.57943.49YesNo028
55R:R:D198 R:R:R175 12.244415.48NoNo058
56R:R:D198 R:R:N189 10.90425.39NoNo056
57R:R:L202 R:R:Y188 13.57944.69NoYes066
58R:R:G273 R:R:L202 12.24443.42NoNo046
59R:R:L227 R:R:T223 12.63282.95NoYes088
60R:R:N296 R:R:W262 12.936312.43YesYes199
61R:R:C261 R:R:N296 17.88049.45NoYes089
62R:R:C261 R:R:M292 13.44053.24NoNo086
63R:R:G273 R:R:I272 10.90421.76NoNo046
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:S33 17.77 1 Yes No 0 7 0 1
L:L:?1 R:R:F36 3.39 1 Yes Yes 0 8 0 1
L:L:?1 R:R:H81 8.95 1 Yes Yes 0 8 0 1
L:L:?1 R:R:N84 13.39 1 Yes Yes 0 6 0 1
L:L:?1 R:R:G85 3.57 1 Yes No 0 7 0 1
L:L:?1 R:R:Y92 2.45 1 Yes Yes 0 8 0 1
L:L:?1 R:R:M115 7.88 1 Yes Yes 0 8 0 1
L:L:?1 R:R:G119 3.57 1 Yes No 0 7 0 1
L:L:?1 R:R:W185 2.38 1 Yes Yes 0 8 0 1
L:L:?1 R:R:W262 2.38 1 Yes Yes 0 9 0 1
L:L:?1 R:R:L287 3.86 1 Yes No 0 6 0 1
L:L:?1 R:R:L290 7.71 1 Yes No 0 7 0 1
L:L:?1 R:R:R291 7.61 1 Yes Yes 0 8 0 1
L:L:?1 R:R:A293 2.19 1 Yes No 0 8 0 1
L:L:?1 R:R:T294 15.4 1 Yes Yes 0 9 0 1
L:L:?1 R:R:Q297 6.49 1 Yes Yes 0 8 0 1
R:R:S29 R:R:Y92 5.09 0 No Yes 7 8 2 1
R:R:V30 R:R:Y92 8.83 0 No Yes 6 8 2 1
R:R:F32 R:R:F36 3.22 1 No Yes 4 8 2 1
R:R:F32 R:R:R291 16.03 1 No Yes 4 8 2 1
R:R:F36 R:R:R291 2.14 1 Yes Yes 8 8 1 1
R:R:F36 R:R:T294 10.38 1 Yes Yes 8 9 1 1
R:R:F36 R:R:W295 14.03 1 Yes Yes 8 5 1 2
R:R:F36 R:R:I298 3.77 1 Yes Yes 8 8 1 2
R:R:G85 R:R:M37 3.49 0 No No 7 7 1 2
R:R:H81 R:R:T294 2.74 1 Yes Yes 8 9 1 1
R:R:H81 R:R:Q297 2.47 1 Yes Yes 8 8 1 1
R:R:H81 R:R:I298 5.3 1 Yes Yes 8 8 1 2
R:R:F111 R:R:N84 6.04 1 Yes Yes 6 6 2 1
R:R:M115 R:R:N84 2.8 1 Yes Yes 8 6 1 1
R:R:N84 R:R:S118 2.98 1 Yes No 6 7 1 2
R:R:A88 R:R:G85 1.95 0 No No 8 7 2 1
R:R:K96 R:R:Y92 7.17 1 No Yes 5 8 2 1
R:R:T184 R:R:Y92 8.74 1 Yes Yes 9 8 2 1
R:R:K96 R:R:T184 4.5 1 No Yes 5 9 2 2
R:R:F111 R:R:M115 3.73 1 Yes Yes 6 8 2 1
R:R:F111 R:R:W185 2 1 Yes Yes 6 8 2 1
R:R:F187 R:R:M115 4.98 1 Yes Yes 8 8 2 1
R:R:G119 R:R:W262 2.81 1 No Yes 7 9 1 1
R:R:L123 R:R:W262 20.5 0 No Yes 7 9 2 1
R:R:Q180 R:R:W185 13.14 1 No Yes 8 8 2 1
R:R:F187 R:R:Q180 5.86 1 Yes No 8 8 2 2
R:R:S182 R:R:T184 7.99 1 No Yes 8 9 2 2
R:R:S182 R:R:W185 4.94 1 No Yes 8 8 2 1
R:R:T184 R:R:W185 6.06 1 Yes Yes 9 8 2 1
R:R:F187 R:R:W185 4.01 1 Yes Yes 8 8 2 1
R:R:T286 R:R:W185 2.43 0 No Yes 7 8 2 1
R:R:L290 R:R:W185 6.83 1 No Yes 7 8 1 1
R:R:F265 R:R:W262 2 0 Yes Yes 8 9 2 1
R:R:L266 R:R:W262 3.42 0 Yes Yes 7 9 2 1
R:R:N296 R:R:W262 12.43 1 Yes Yes 9 9 2 1
R:R:Q297 R:R:W262 12.05 1 Yes Yes 8 9 1 1
R:R:L287 R:R:R291 15.79 1 No Yes 6 8 1 1
R:R:T294 R:R:W295 2.43 1 Yes Yes 9 5 1 2
R:R:I298 R:R:W295 11.74 1 Yes Yes 8 5 2 2
R:R:N296 R:R:Q297 7.92 1 Yes Yes 9 8 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8IUK_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 1.87
Number of Linked Nodes 264
Number of Links 308
Number of Hubs 41
Number of Links mediated by Hubs 152
Number of Communities 10
Number of Nodes involved in Communities 67
Number of Links involved in Communities 97
Path Summary
Number Of Nodes in MetaPath 64
Number Of Links MetaPath 63
Number of Shortest Paths 72054
Length Of Smallest Path 3
Average Path Length 16.1486
Length of Longest Path 38
Minimum Path Strength 1.24
Average Path Strength 5.62439
Maximum Path Strength 16.585
Minimum Path Correlation 0.7
Average Path Correlation 0.928922
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.44828
Average % Of Corr. Nodes 49.5454
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 39.7755
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeUGU
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeUGU
NameDinoprost
SynonymsDinoprost; Prostaglandin F2a; PGF2alpha
Identifier
FormulaC20 H34 O5
Molecular Weight354.481
SMILES
PubChem5280363
Formal Charge0
Total Atoms59
Total Chiral Atoms5
Total Bonds59
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP43088
Sequence
>8IUK_nogp_Chain_R
SVFFSVIFM TVGILSNSL AIAILMKAY QRFRQKSKA SFLLLASGL 
VITDFFGHL INGAIAVFV YASDKEWIR FDQSNVLCS IFGICMVFS 
GLCPLLLGS VMAIERCIG VTKPIFHST KITSKHVKM MLSGVCLFA 
VFIALLPIL GHRDYKIQA SRTWCFYNT EDIKDWEDR FYLLLFSFL 
GLLALGVSL LCNAITGIT LLRVKFKSQ QHGRSHHLE MVIQLLAIM 
CVSCICWSP FLVTMANIG INGNHSLET CETTLFALR MATWNQILD 
PWVYILLRK AVLKNLYKL ASQCC


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8XJKALipidProstanoidFP-alphaHomo sapiensCloprosetnol-chim(NtGi1-Gs-CtGq)/β1/γ22.632024-02-28doi.org/10.1016/j.celrep.2024.113893
8XJK (No Gprot) ALipidProstanoidFP-alphaHomo sapiensCloprosetnol-2.632024-02-28doi.org/10.1016/j.celrep.2024.113893
8XJMALipidProstanoidFP-alphaHomo sapiensLatanoprost-chim(NtGi2-Gs-CtGq)/β1/γ22.852024-02-28To be published
8XJM (No Gprot) ALipidProstanoidFP-alphaHomo sapiensLatanoprost-2.852024-02-28To be published
8XJLALipidProstanoidFP-alphaHomo sapiensPGF2-α-chim(NtGi2-Gs-CtGq)/β1/γ22.772024-02-28To be published
8XJL (No Gprot) ALipidProstanoidFP-alphaHomo sapiensPGF2-α-2.772024-02-28To be published
8IQ6ALipidProstanoidFP-alphaHomo sapiensLatanoprost-chim(NtGi1-Gs-CtGq)/β1/γ23.42024-01-3110.1038/s41467-023-43922-8
8IQ6 (No Gprot) ALipidProstanoidFP-alphaHomo sapiensLatanoprost-3.42024-01-3110.1038/s41467-023-43922-8
8IQ4ALipidProstanoidFP-alphaHomo sapiensCarboprost-chim(NtGi1-Gs-CtGq)/β1/γ22.72024-01-3110.1038/s41467-023-43922-8
8IQ4 (No Gprot) ALipidProstanoidFP-alphaHomo sapiensCarboprost-2.72024-01-3110.1038/s41467-023-43922-8
8IUMALipidProstanoidFP-alphaHomo sapiensTafluprost acid-chim(NtGi1-Gs-CtGq)/β1/γ23.142023-07-1210.1038/s41467-023-38411-x
8IUM (No Gprot) ALipidProstanoidFP-alphaHomo sapiensTafluprost acid-3.142023-07-1210.1038/s41467-023-38411-x
8IULALipidProstanoidFP-alphaHomo sapiensLatanoprost-chim(NtGi1-Gs-CtGq)/β1/γ22.782023-07-1210.1038/s41467-023-38411-x
8IUL (No Gprot) ALipidProstanoidFP-alphaHomo sapiensLatanoprost-2.782023-07-1210.1038/s41467-023-38411-x
8IUKALipidProstanoidFP-alphaHomo sapiensPGF2-α-chim(NtGi1-Gs-CtGq)/β1/γ22.672023-07-1210.1038/s41467-023-38411-x
8IUK (No Gprot) ALipidProstanoidFP-alphaHomo sapiensPGF2-α-2.672023-07-1210.1038/s41467-023-38411-x




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Download 8IUK_nogp.zip



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