Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 6.531410
2R:R:I48 3.9225407
3R:R:K63 6.4425426
4R:R:S65 6.3025427
5R:R:L67 3.4025408
6R:R:L69 4.51507
7R:R:L73 6.156519
8R:R:D77 7.426519
9R:R:F78 3.93407
10R:R:H81 7.6625418
11R:R:Y92 8.362518
12R:R:W98 9.128505
13R:R:C121 4.468507
14R:R:M129 5.3575419
15R:R:E132 6.398529
16R:R:R133 9.7075429
17R:R:C134 2.9625406
18R:R:H143 6.12628
19R:R:I166 4.9675406
20R:R:P170 6.73419
21R:R:Y177 7.9517
22R:R:T184 7.365419
23R:R:W185 9.246518
24R:R:F187 7.81518
25R:R:Y188 7.26716
26R:R:T190 6.8675407
27R:R:Y201 4.846516
28R:R:N220 4.7225409
29R:R:T223 3.2275408
30R:R:W262 10.665619
31R:R:F265 5.4475408
32R:R:E281 7.34631
33R:R:N296 6.51519
34R:R:Q297 7.54618
35R:R:I298 6.0975418
36R:R:D300 6.485419
37R:R:Y304 8.03419
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:W185 58.44145.63YesYes108
2R:R:Q180 R:R:W185 24.101821.9NoYes188
3R:R:Q180 R:R:T190 23.84357.09NoYes087
4R:R:I272 R:R:T190 18.96866.08NoYes067
5R:R:E281 R:R:I272 17.7636.83YesNo016
6L:L:?1 R:R:R291 10.18993.76YesNo008
7R:R:H81 R:R:I298 11.41946.63YesYes188
8L:L:?1 R:R:Q297 96.71827.41YesYes108
9R:R:D77 R:R:Q297 1009.14YesYes198
10R:R:D77 R:R:N44 36.80336.73YesNo099
11R:R:N44 R:R:V74 24.70945.91NoNo098
12R:R:I48 R:R:V74 16.81584.61YesNo078
13R:R:F78 R:R:I48 12.73983.77YesYes077
14R:R:N44 R:R:P301 12.443213.03NoNo099
15R:R:P301 R:R:S43 11.06543.56NoNo099
16R:R:D77 R:R:L73 86.41829.5YesYes199
17R:R:L73 R:R:M129 83.25125.65YesYes199
18R:R:L69 R:R:M129 86.94455.65YesYes079
19R:R:L69 R:R:V152 11.62514.47YesNo077
20R:R:E132 R:R:L69 74.9515.3YesYes097
21R:R:E132 R:R:H143 12.54376.15YesYes298
22R:R:E132 R:R:R133 56.95835.82YesYes299
23R:R:L125 R:R:L73 12.69674.15NoYes079
24L:L:?1 R:R:W262 10.65888.45YesYes109
25R:R:N296 R:R:W262 10.94110.17YesYes199
26R:R:D300 R:R:N296 14.26598.08YesYes199
27L:L:?1 R:R:M115 43.027310.49YesNo008
28R:R:M115 R:R:N84 11.7838.41NoNo086
29R:R:F111 R:R:M115 31.77534.98NoNo068
30R:R:C186 R:R:F111 29.3026.98NoNo096
31R:R:C186 R:R:W98 25.41743.92NoYes095
32R:R:D102 R:R:W98 11.76864.47NoYes045
33R:R:D102 R:R:L107 10.32876.79NoNo045
34R:R:I179 R:R:W98 10.34316.44NoYes055
35R:R:F187 R:R:W185 35.51177.02YesYes188
36R:R:F187 R:R:Y188 67.215213.41YesYes186
37R:R:Y177 R:R:Y188 15.77766.95YesYes176
38R:R:I113 R:R:Y177 11.84524.84NoYes057
39L:L:?1 R:R:F265 41.40556.02YesYes008
40R:R:F187 R:R:F265 35.93744.29YesYes088
41R:R:Y188 R:R:Y201 33.95217.94YesYes166
42R:R:F200 R:R:Y201 16.29915.16NoYes056
43R:R:F200 R:R:L204 13.96936.09NoNo054
44R:R:L204 R:R:L208 11.62994.15NoNo045
45R:R:M247 R:R:R133 52.13138.69NoYes289
46R:R:L251 R:R:M247 51.88255.65NoNo088
47R:R:L251 R:R:T223 42.50592.95NoYes088
48R:R:C134 R:R:T223 38.96573.38YesYes068
49R:R:C134 R:R:C219 10.44351.82YesNo067
50R:R:L251 R:R:N220 10.44354.12NoYes089
51R:R:C134 R:R:T138 25.90543.38YesNo067
52R:R:T138 R:R:T226 14.76344.71NoNo076
53R:R:K139 R:R:T138 10.44353NoNo057
54R:R:R175 R:R:Y201 11.83084.12NoYes186
55R:R:L202 R:R:Y188 13.50054.69NoYes066
56R:R:R229 R:R:T226 13.32823.88NoNo046
57R:R:R229 R:R:V230 11.88353.92NoNo047
58R:R:H244 R:R:V230 10.42914.15NoNo087
59R:R:G273 R:R:L202 13.58183.42NoNo046
60R:R:G273 R:R:L203 10.19953.42NoNo044
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:S33 5.57 1 Yes No 0 7 0 1
L:L:?1 R:R:H81 11.13 1 Yes Yes 0 8 0 1
L:L:?1 R:R:A88 3.9 1 Yes No 0 8 0 1
L:L:?1 R:R:Y92 7.25 1 Yes Yes 0 8 0 1
L:L:?1 R:R:M115 10.49 1 Yes No 0 8 0 1
L:L:?1 R:R:T184 6.38 1 Yes Yes 0 9 0 1
L:L:?1 R:R:W185 5.63 1 Yes Yes 0 8 0 1
L:L:?1 R:R:W262 8.45 1 Yes Yes 0 9 0 1
L:L:?1 R:R:F265 6.02 1 Yes Yes 0 8 0 1
L:L:?1 R:R:L290 7.7 1 Yes No 0 7 0 1
L:L:?1 R:R:T294 4.56 1 Yes No 0 9 0 1
L:L:?1 R:R:Q297 7.41 1 Yes Yes 0 8 0 1
R:R:L28 R:R:Y92 4.69 0 No Yes 4 8 2 1
R:R:V30 R:R:Y92 11.36 0 No Yes 6 8 2 1
R:R:F32 R:R:R291 23.52 0 No No 4 8 2 1
R:R:F36 R:R:T294 3.89 0 No No 8 9 2 1
R:R:G40 R:R:H81 7.94 1 No Yes 9 8 2 1
R:R:G40 R:R:I298 5.29 1 No Yes 9 8 2 2
R:R:D77 R:R:P122 6.44 1 Yes No 9 9 2 2
R:R:D77 R:R:Q297 9.14 1 Yes Yes 9 8 2 1
R:R:H81 R:R:Q297 4.95 1 Yes Yes 8 8 1 1
R:R:H81 R:R:I298 6.63 1 Yes Yes 8 8 1 2
R:R:M115 R:R:N84 8.41 0 No No 8 6 1 2
R:R:K96 R:R:Y92 4.78 1 No Yes 5 8 2 1
R:R:T184 R:R:Y92 13.73 1 Yes Yes 9 8 1 1
R:R:K96 R:R:T184 4.5 1 No Yes 5 9 2 1
R:R:F111 R:R:M115 4.98 0 No No 6 8 2 1
R:R:P122 R:R:Q297 9.47 1 No Yes 9 8 2 1
R:R:L123 R:R:W262 21.64 0 No Yes 7 9 2 1
R:R:Q180 R:R:W185 21.9 1 No Yes 8 8 2 1
R:R:F187 R:R:Q180 4.68 1 Yes No 8 8 2 2
R:R:T184 R:R:W185 4.85 1 Yes Yes 9 8 1 1
R:R:F187 R:R:W185 7.02 1 Yes Yes 8 8 2 1
R:R:L290 R:R:W185 6.83 1 No Yes 7 8 1 1
R:R:F187 R:R:F265 4.29 1 Yes Yes 8 8 2 1
R:R:L266 R:R:W262 5.69 0 No Yes 7 9 2 1
R:R:A293 R:R:W262 10.37 0 No Yes 8 9 2 1
R:R:N296 R:R:W262 10.17 1 Yes Yes 9 9 2 1
R:R:Q297 R:R:W262 7.67 1 Yes Yes 8 9 1 1
R:R:F265 R:R:M269 8.71 0 Yes No 8 7 1 2
R:R:L287 R:R:R291 7.29 0 No No 6 8 2 1
R:R:N296 R:R:Q297 6.6 1 Yes Yes 9 8 2 1
L:L:?1 R:R:R291 3.76 1 Yes No 0 8 0 1
L:L:?1 R:R:G119 3.17 1 Yes No 0 7 0 1
R:R:A289 R:R:F265 2.77 0 No Yes 7 8 2 1
R:R:S33 R:R:V89 1.62 0 No No 7 6 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8XJK_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.77
Number of Linked Nodes 255
Number of Links 284
Number of Hubs 37
Number of Links mediated by Hubs 140
Number of Communities 4
Number of Nodes involved in Communities 46
Number of Links involved in Communities 70
Path Summary
Number Of Nodes in MetaPath 61
Number Of Links MetaPath 60
Number of Shortest Paths 45204
Length Of Smallest Path 3
Average Path Length 12.3902
Length of Longest Path 31
Minimum Path Strength 1.52
Average Path Strength 6.60613
Maximum Path Strength 17.485
Minimum Path Correlation 0.7
Average Path Correlation 0.923276
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.16667
Average % Of Corr. Nodes 50.5618
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 53.6121
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process• cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cell communication   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • cell population proliferation   • positive regulation of cell population proliferation   • regulation of cell population proliferation   • positive regulation of biological process   • positive regulation of cellular process   • positive regulation of cytosolic calcium ion concentration   • regulation of biological quality   • negative regulation of programmed cell death   • regulation of apoptotic process   • negative regulation of biological process   • regulation of programmed cell death   • cell death   • negative regulation of apoptotic process   • negative regulation of cellular process   • apoptotic process   • programmed cell death   • regulation of biosynthetic process   • regulation of macromolecule metabolic process   • gene expression   • macromolecule biosynthetic process   • positive regulation of macromolecule biosynthetic process   • regulation of gene expression   • positive regulation of metabolic process   • biosynthetic process   • positive regulation of gene expression   • positive regulation of biosynthetic process   • regulation of macromolecule biosynthetic process   • metabolic process   • positive regulation of macromolecule metabolic process   • macromolecule metabolic process   • regulation of metabolic process   • defense response   • response to stress   • inflammatory response   • response to ketone   • response to prostaglandin   • response to lipid   • cellular response to prostaglandin D stimulus   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • response to oxygen-containing compound   • cellular response to oxygen-containing compound   • cellular response to endogenous stimulus   • cellular response to chemical stimulus   • cellular response to alcohol   • response to hormone   • response to prostaglandin D   • response to chemical   • cellular response to lipid   • cellular response to ketone   • cellular response to hormone stimulus   • multi-multicellular organism process   • multicellular organismal process   • reproductive process   • parturition   • multi-organism reproductive process   • biological process involved in interspecies interaction between organisms   • response to other organism   • response to external stimulus   • response to lipopolysaccharide   • response to biotic stimulus   • response to bacterium   • response to external biotic stimulus   • response to molecule of bacterial origin   • response to estradiol   • cellular anatomical structure   • extracellular region   • cell periphery   • plasma membrane   • membrane   • intracellular anatomical structure   • cytoplasm   • protein binding   • binding   • G-protein beta-subunit binding   • fibroblast proliferation   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • response to nitrogen compound   • cellular response to monoamine stimulus   • cellular response to prostaglandin E stimulus   • response to prostaglandin E   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • extracellular exosome   • membrane-bounded organelle   • extracellular vesicle   • extracellular organelle   • organelle   • extracellular space   • vesicle   • extracellular membrane-bounded organelle   • synapse   • cell junction   • enzyme binding   • GTPase binding   • protein-containing complex binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • phospholipase C-activating G protein-coupled receptor signaling pathway   • synaptic signaling   • cellular response to acetylcholine   • cell-cell signaling   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • neuron projection   • photoreceptor disc membrane   • photoreceptor outer segment   • plasma membrane bounded cell projection   • cell projection   • photoreceptor cell cilium   • organelle membrane   • cytosol   • vacuolar membrane   • lytic vacuole   • vacuole   • intracellular membrane-bounded organelle   • intracellular organelle   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • lysosome
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeA1D
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeA1D
Name
Synonyms
Identifier
Formula
Molecular Weight
SMILES
PubChem
Formal Charge
Total Atoms
Total Chiral Atoms
Total Bonds
Total Aromatic Bonds

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP43088
Sequence
>8XJK_nogp_Chain_R
NRLSVFFSV IFMTVGILS NSLAIAILM KAYQRFRQK SKASFLLLA 
SGLVITDFF GHLINGAIA VFVYASDKE WIRFDQSNV LCSIFGICM 
VFSGLCPLL LGSVMAIER CIGVTKPIF HSTKITSKH VKMMLSGVC 
LFAVFIALL PILGHRDYK IQASRTWCF YNTEDIKDW EDRFYLLLF 
SFLGLLALG VSLLCNAIT GITLLRVKF SHHLEMVIQ LLAIMCVSC 
ICWSPFLVT MANIGINGN HSLETCETT LFALRMATW NQILDPWVY 
ILLRKAVLK NLYKLASQ


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8IUKALipidProstanoidFP-alphaHomo sapiensPGF2-α-chim(NtGi1-Gs-CtGq)/β1/γ22.672023-07-12doi.org/10.1038/s41467-023-38411-x
8IUK (No Gprot) ALipidProstanoidFP-alphaHomo sapiensPGF2-α-2.672023-07-12doi.org/10.1038/s41467-023-38411-x
8IULALipidProstanoidFP-alphaHomo sapiensLatanoprost-chim(NtGi1-Gs-CtGq)/β1/γ22.782023-07-12doi.org/10.1038/s41467-023-38411-x
8IUL (No Gprot) ALipidProstanoidFP-alphaHomo sapiensLatanoprost-2.782023-07-12doi.org/10.1038/s41467-023-38411-x
8IUMALipidProstanoidFP-alphaHomo sapiensTafluprost acid-chim(NtGi1-Gs-CtGq)/β1/γ23.142023-07-12doi.org/10.1038/s41467-023-38411-x
8IUM (No Gprot) ALipidProstanoidFP-alphaHomo sapiensTafluprost acid-3.142023-07-12doi.org/10.1038/s41467-023-38411-x
8IQ4ALipidProstanoidFP-alphaHomo sapiensCarboprost-chim(NtGi1-Gs-CtGq)/β1/γ22.72024-01-31doi.org/10.1038/s41467-023-43922-8
8IQ4 (No Gprot) ALipidProstanoidFP-alphaHomo sapiensCarboprost-2.72024-01-31doi.org/10.1038/s41467-023-43922-8
8IQ6ALipidProstanoidFP-alphaHomo sapiensLatanoprost-chim(NtGi1-Gs-CtGq)/β1/γ23.42024-01-31doi.org/10.1038/s41467-023-43922-8
8IQ6 (No Gprot) ALipidProstanoidFP-alphaHomo sapiensLatanoprost-3.42024-01-31doi.org/10.1038/s41467-023-43922-8
8XJKALipidProstanoidFP-alphaHomo sapiensCloprosetnol-chim(NtGi1-Gs-CtGq)/β1/γ22.632024-02-28doi.org/10.1016/j.celrep.2024.113893
8XJK (No Gprot) ALipidProstanoidFP-alphaHomo sapiensCloprosetnol-2.632024-02-28doi.org/10.1016/j.celrep.2024.113893
8XJLALipidProstanoidFP-alphaHomo sapiensPGF2-α-chim(NtGi2-Gs-CtGq)/β1/γ22.772024-02-28doi.org/10.1016/j.celrep.2024.113893
8XJL (No Gprot) ALipidProstanoidFP-alphaHomo sapiensPGF2-α-2.772024-02-28doi.org/10.1016/j.celrep.2024.113893
8XJMALipidProstanoidFP-alphaHomo sapiensLatanoprost-chim(NtGi2-Gs-CtGq)/β1/γ22.852024-02-28doi.org/10.1016/j.celrep.2024.113893
8XJM (No Gprot) ALipidProstanoidFP-alphaHomo sapiensLatanoprost-2.852024-02-28doi.org/10.1016/j.celrep.2024.113893




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