Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 5.967691310
2R:R:N44 7.625409
3R:R:K63 7.4625426
4R:R:S65 7.35427
5R:R:L67 3.37408
6R:R:L69 4.5475407
7R:R:L73 5.928519
8R:R:D77 6.892519
9R:R:F78 4.195407
10R:R:H81 6.51418
11R:R:N84 6.0025416
12R:R:Y92 7.286518
13R:R:W98 8.97615
14R:R:F111 7.2675416
15R:R:L120 3.7125416
16R:R:C121 4.468507
17R:R:M129 6.255419
18R:R:E132 6.632529
19R:R:R133 9.685429
20R:R:C134 3.4175406
21R:R:H143 7.328528
22R:R:I147 3.725425
23R:R:I166 4.6525416
24R:R:Y177 10.5025417
25R:R:T184 6.2575419
26R:R:W185 8.82333618
27R:R:C186 5.7275419
28R:R:F187 8.852518
29R:R:Y188 8.20714716
30R:R:T190 6.91407
31R:R:Y201 4.11516
32R:R:L208 3.755415
33R:R:T223 3.2275408
34R:R:Q250 10.5175428
35R:R:W262 9.64571719
36R:R:F265 5.72571718
37R:R:E281 12.29431
38R:R:R291 8.95418
39R:R:N296 6.46519
40R:R:Q297 7.10667618
41R:R:I298 6.8525418
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:Q297 67.4256.04YesYes108
2R:R:D77 R:R:Q297 1007.83YesYes198
3R:R:D77 R:R:N44 26.72486.73YesYes099
4R:R:N44 R:R:P301 11.794313.03YesNo099
5R:R:P301 R:R:S43 10.60713.56NoNo099
6R:R:D77 R:R:L73 85.45878.14YesYes199
7R:R:L73 R:R:M129 57.25685.65YesYes199
8R:R:L69 R:R:M129 55.42925.65YesYes079
9R:R:E132 R:R:L69 34.26475.3YesYes097
10R:R:L69 R:R:V152 20.07124.47YesNo077
11R:R:L68 R:R:V152 15.47174.47NoNo067
12R:R:L68 R:R:Y55 13.936710.55NoNo066
13R:R:E132 R:R:H143 20.6626.15YesYes298
14R:R:H143 R:R:I147 14.24313.98YesYes285
15R:R:L125 R:R:L73 14.54685.54NoYes079
16R:R:N296 R:R:W262 30.548610.17YesYes199
17R:R:D300 R:R:N296 29.7128.08NoYes199
18R:R:L73 R:R:Y304 45.8963.52YesNo199
19L:L:?1 R:R:M115 20.84987.33YesNo108
20R:R:F111 R:R:M115 11.68384.98YesNo168
21L:L:?1 R:R:T184 12.66125.73YesYes109
22L:L:?1 R:R:F265 42.47267.89YesYes108
23R:R:F187 R:R:F265 66.89215.36YesYes188
24R:R:F187 R:R:Y188 30.523713.41YesYes186
25R:R:F187 R:R:F205 13.33211.79YesNo188
26R:R:F205 R:R:L120 13.26853.65NoYes186
27R:R:I254 R:R:Y304 45.13416.92NoNo089
28R:R:I254 R:R:Q250 39.40534.12NoYes088
29R:R:M247 R:R:Q250 33.19354.08NoYes288
30R:R:L251 R:R:M247 35.5765.65NoNo088
31R:R:L251 R:R:T223 34.22882.95NoYes088
32R:R:C134 R:R:T223 17.65553.38YesYes068
33R:R:T223 R:R:V137 14.62964.76YesNo088
34R:R:L227 R:R:V137 13.31274.47NoNo088
35R:R:Y188 R:R:Y201 12.99255.96YesYes166
36R:R:T184 R:R:W185 13.16366.06YesYes198
37R:R:Q180 R:R:W185 45.603415.33NoYes188
38R:R:Q180 R:R:T190 67.46365.67NoYes087
39R:R:E191 R:R:T190 33.43098.47NoYes037
40R:R:E191 R:R:N189 20.12372.63NoNo036
41R:R:F265 R:R:W185 28.6854.01YesYes188
42L:L:?1 R:R:L290 12.1095.38YesNo107
43R:R:L290 R:R:W185 11.736314.81NoYes178
44R:R:F187 R:R:Q180 24.94134.68YesNo188
45R:R:D198 R:R:N189 13.4375.39NoNo056
46R:R:I272 R:R:T190 33.43097.6NoYes067
47R:R:D192 R:R:E191 10.08532.6NoNo023
48R:R:D198 R:R:I193 10.08539.8NoNo051
49R:R:E281 R:R:I272 30.112417.76YesNo016
50R:R:E281 R:R:N271 10.060515.77YesNo314
51R:R:E281 R:R:S279 10.06055.75YesNo311
52R:R:Q297 R:R:W262 32.62757.67YesYes189
53R:R:F265 R:R:W262 59.18674.01YesYes189
54R:R:D300 R:R:L73 28.6276.79NoYes199
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:S33 5.84 1 Yes No 0 7 0 1
L:L:?1 R:R:H81 7.5 1 Yes Yes 0 8 0 1
L:L:?1 R:R:A88 4.08 1 Yes No 0 8 0 1
L:L:?1 R:R:Y92 6.84 1 Yes Yes 0 8 0 1
L:L:?1 R:R:M115 7.33 1 Yes No 0 8 0 1
L:L:?1 R:R:T184 5.73 1 Yes Yes 0 9 0 1
L:L:?1 R:R:W262 8.12 1 Yes Yes 0 9 0 1
L:L:?1 R:R:F265 7.89 1 Yes Yes 0 8 0 1
L:L:?1 R:R:L290 5.38 1 Yes No 0 7 0 1
L:L:?1 R:R:R291 4.72 1 Yes Yes 0 8 0 1
L:L:?1 R:R:T294 4.78 1 Yes No 0 9 0 1
L:L:?1 R:R:Q297 6.04 1 Yes Yes 0 8 0 1
R:R:F32 R:R:R27 4.28 1 No No 4 2 2 2
R:R:R27 R:R:R291 7.46 1 No Yes 2 8 2 1
R:R:L28 R:R:Y92 3.52 0 No Yes 4 8 2 1
R:R:L28 R:R:L287 4.15 0 No No 4 6 2 2
R:R:V30 R:R:Y92 11.36 0 No Yes 6 8 2 1
R:R:F32 R:R:R291 13.9 1 No Yes 4 8 2 1
R:R:F36 R:R:T294 6.49 1 No No 8 9 2 1
R:R:F36 R:R:W295 14.03 1 No No 8 5 2 2
R:R:F36 R:R:I298 3.77 1 No Yes 8 8 2 2
R:R:G40 R:R:H81 9.53 0 No Yes 9 8 2 1
R:R:D77 R:R:P122 6.44 1 Yes No 9 9 2 2
R:R:D77 R:R:Q297 7.83 1 Yes Yes 9 8 2 1
R:R:H81 R:R:Q297 3.71 1 Yes Yes 8 8 1 1
R:R:H81 R:R:I298 5.3 1 Yes Yes 8 8 1 2
R:R:F111 R:R:N84 4.83 1 Yes Yes 6 6 2 2
R:R:M115 R:R:N84 7.01 1 No Yes 8 6 1 2
R:R:K96 R:R:Y92 5.97 1 No Yes 5 8 2 1
R:R:T184 R:R:Y92 8.74 1 Yes Yes 9 8 1 1
R:R:K96 R:R:T184 4.5 1 No Yes 5 9 2 1
R:R:F111 R:R:M115 4.98 1 Yes No 6 8 2 1
R:R:P122 R:R:Q297 9.47 1 No Yes 9 8 2 1
R:R:L123 R:R:W262 22.78 0 No Yes 7 9 2 1
R:R:T184 R:R:W185 6.06 1 Yes Yes 9 8 1 2
R:R:F187 R:R:W185 9.02 1 Yes Yes 8 8 2 2
R:R:F265 R:R:W185 4.01 1 Yes Yes 8 8 1 2
R:R:L290 R:R:W185 14.81 1 No Yes 7 8 1 2
R:R:F187 R:R:F265 5.36 1 Yes Yes 8 8 2 1
R:R:F265 R:R:W262 4.01 1 Yes Yes 8 9 1 1
R:R:L266 R:R:W262 5.69 0 No Yes 7 9 2 1
R:R:A293 R:R:W262 9.08 0 No Yes 8 9 2 1
R:R:N296 R:R:W262 10.17 1 Yes Yes 9 9 2 1
R:R:Q297 R:R:W262 7.67 1 Yes Yes 8 9 1 1
R:R:F265 R:R:M269 9.95 1 Yes No 8 7 1 2
R:R:F265 R:R:L290 6.09 1 Yes No 8 7 1 1
R:R:L287 R:R:R291 9.72 0 No Yes 6 8 2 1
R:R:T294 R:R:W295 3.64 1 No No 9 5 1 2
R:R:I298 R:R:W295 15.27 1 Yes No 8 5 2 2
R:R:N296 R:R:Q297 7.92 1 Yes Yes 9 8 2 1
L:L:?1 R:R:G119 3.33 1 Yes No 0 7 0 1
R:R:A289 R:R:F265 2.77 0 No Yes 7 8 2 1
R:R:S33 R:R:V89 1.62 0 No No 7 6 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8XJM_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.52
Number of Linked Nodes 265
Number of Links 304
Number of Hubs 41
Number of Links mediated by Hubs 153
Number of Communities 4
Number of Nodes involved in Communities 65
Number of Links involved in Communities 99
Path Summary
Number Of Nodes in MetaPath 55
Number Of Links MetaPath 54
Number of Shortest Paths 69744
Length Of Smallest Path 3
Average Path Length 12.9311
Length of Longest Path 25
Minimum Path Strength 1.51
Average Path Strength 6.54368
Maximum Path Strength 18.7867
Minimum Path Correlation 0.7
Average Path Correlation 0.92841
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 5.55556
Average % Of Corr. Nodes 49.2604
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 54.8448
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
Code7WT
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
Code7WT
NameLatanoprost acid
Synonyms7-[3,5-Dihydroxy-2-(3-hydroxy-5-phenylpentyl)cyclopentyl]hept-5-enoic acid
Identifier
FormulaC23 H34 O5
Molecular Weight390.513
SMILES
PubChem6441636
Formal Charge0
Total Atoms62
Total Chiral Atoms5
Total Bonds63
Total Aromatic Bonds6

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP43088
Sequence
>8XJM_nogp_Chain_R
NRLSVFFSV IFMTVGILS NSLAIAILM KAYQRFRQK SKASFLLLA 
SGLVITDFF GHLINGAIA VFVYASDKE WIRFDQSNV LCSIFGICM 
VFSGLCPLL LGSVMAIER CIGVTKPIF HSTKITSKH VKMMLSGVC 
LFAVFIALL PILGHRDYK IQASRTWCF YNTEDIKDW EDRFYLLLF 
SFLGLLALG VSLLCNAIT GITLLRVKF SHHLEMVIQ LLAIMCVSC 
ICWSPFLVT MANIGINGN HSLETCETT LFALRMATW NQILDPWVY 
ILLRKAVLK NLYKLASQ


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8XJKALipidProstanoidFP-alphaHomo sapiensCloprosetnol-chim(NtGi1-Gs-CtGq)/β1/γ22.632024-02-28doi.org/10.1016/j.celrep.2024.113893
8XJK (No Gprot) ALipidProstanoidFP-alphaHomo sapiensCloprosetnol-2.632024-02-28doi.org/10.1016/j.celrep.2024.113893
8XJMALipidProstanoidFP-alphaHomo sapiensLatanoprost-chim(NtGi2-Gs-CtGq)/β1/γ22.852024-02-28To be published
8XJM (No Gprot) ALipidProstanoidFP-alphaHomo sapiensLatanoprost-2.852024-02-28To be published
8XJLALipidProstanoidFP-alphaHomo sapiensPGF2-α-chim(NtGi2-Gs-CtGq)/β1/γ22.772024-02-28To be published
8XJL (No Gprot) ALipidProstanoidFP-alphaHomo sapiensPGF2-α-2.772024-02-28To be published
8IQ6ALipidProstanoidFP-alphaHomo sapiensLatanoprost-chim(NtGi1-Gs-CtGq)/β1/γ23.42024-01-3110.1038/s41467-023-43922-8
8IQ6 (No Gprot) ALipidProstanoidFP-alphaHomo sapiensLatanoprost-3.42024-01-3110.1038/s41467-023-43922-8
8IQ4ALipidProstanoidFP-alphaHomo sapiensCarboprost-chim(NtGi1-Gs-CtGq)/β1/γ22.72024-01-3110.1038/s41467-023-43922-8
8IQ4 (No Gprot) ALipidProstanoidFP-alphaHomo sapiensCarboprost-2.72024-01-3110.1038/s41467-023-43922-8
8IUMALipidProstanoidFP-alphaHomo sapiensTafluprost acid-chim(NtGi1-Gs-CtGq)/β1/γ23.142023-07-1210.1038/s41467-023-38411-x
8IUM (No Gprot) ALipidProstanoidFP-alphaHomo sapiensTafluprost acid-3.142023-07-1210.1038/s41467-023-38411-x
8IULALipidProstanoidFP-alphaHomo sapiensLatanoprost-chim(NtGi1-Gs-CtGq)/β1/γ22.782023-07-1210.1038/s41467-023-38411-x
8IUL (No Gprot) ALipidProstanoidFP-alphaHomo sapiensLatanoprost-2.782023-07-1210.1038/s41467-023-38411-x
8IUKALipidProstanoidFP-alphaHomo sapiensPGF2-α-chim(NtGi1-Gs-CtGq)/β1/γ22.672023-07-1210.1038/s41467-023-38411-x
8IUK (No Gprot) ALipidProstanoidFP-alphaHomo sapiensPGF2-α-2.672023-07-1210.1038/s41467-023-38411-x




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8XJM_nogp.zip



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.