Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 5.7451210
2R:R:N44 7.375409
3R:R:K63 6.825416
4R:R:S65 6.325417
5R:R:F66 5.806517
6R:R:L67 3.8875408
7R:R:L73 5.354519
8R:R:D77 6.334519
9R:R:H81 6.16418
10R:R:N84 5.846516
11R:R:Y92 8.6725418
12R:R:W98 6.07167615
13R:R:F111 5.862516
14R:R:V116 5.615418
15R:R:C121 4.6825407
16R:R:M129 5.47519
17R:R:E132 5.864519
18R:R:R133 8.88419
19R:R:C134 2.9625406
20R:R:H143 5.96618
21R:R:I147 2.7325415
22R:R:I166 4.6525406
23R:R:Y177 8.14517
24R:R:S182 4.04408
25R:R:W185 8.94518
26R:R:F187 6.91418
27R:R:Y188 8.03143716
28R:R:T190 6.8575417
29R:R:I193 5.375401
30R:R:Y201 4.745616
31R:R:T223 3.2275408
32R:R:Q250 9.4975418
33R:R:W262 9.86667619
34R:R:W295 7.38405
35R:R:N296 8.675419
36R:R:Q297 8.442518
37R:R:D300 5.815419
38R:R:Y304 7.735419
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:L287 15.14883.86YesNo006
2R:R:L287 R:R:R291 12.4426.07NoNo068
3L:L:?1 R:R:H81 11.936610.74YesYes108
4R:R:H81 R:R:N44 15.74533.83YesYes089
5R:R:N44 R:R:P301 16.375813.03YesNo099
6R:R:P301 R:R:S43 10.67063.56NoNo099
7L:L:?1 R:R:Q297 1006.49YesYes108
8R:R:D77 R:R:Q297 81.000910.44YesYes198
9R:R:D77 R:R:L73 77.40324.07YesYes199
10R:R:L73 R:R:M129 55.39787.07YesYes199
11R:R:F66 R:R:M129 41.00453.73YesYes179
12R:R:E132 R:R:F66 14.93774.66YesYes197
13R:R:L69 R:R:M129 15.62557.07NoYes079
14R:R:E132 R:R:L69 14.68245.3YesNo097
15R:R:E132 R:R:H143 24.86584.92YesYes198
16R:R:H143 R:R:I147 12.76513.98YesYes185
17R:R:F66 R:R:R133 19.931712.83YesYes179
18R:R:D300 R:R:D77 21.21093.99YesYes199
19R:R:N296 R:R:Q297 18.02749.24YesYes198
20R:R:D300 R:R:N296 21.41156.73YesYes199
21R:R:L73 R:R:Y304 21.69284.69YesYes199
22R:R:D300 R:R:Y304 39.88695.75YesYes199
23L:L:?1 R:R:N84 25.83493.82YesYes106
24R:R:F111 R:R:N84 18.13424.83YesYes166
25L:L:?1 R:R:M115 18.79074.92YesNo108
26R:R:F111 R:R:M115 17.8194.98YesNo168
27R:R:F111 R:R:I87 14.395911.3YesNo066
28R:R:I87 R:R:L107 12.34565.71NoNo065
29R:R:F90 R:R:L107 10.42052.44NoNo055
30R:R:C186 R:R:F111 10.16524.19NoYes196
31L:L:?1 R:R:W185 64.20053.97YesYes108
32R:R:F187 R:R:W185 44.37566.01YesYes188
33R:R:F187 R:R:Y188 27.270413.41YesYes186
34R:R:M247 R:R:R133 21.50528.69NoYes189
35R:R:L251 R:R:M247 69.55664.24NoNo088
36R:R:L251 R:R:T223 48.29632.95NoYes088
37R:R:C134 R:R:T223 26.91353.38YesYes068
38R:R:C134 R:R:C219 11.30361.82YesNo067
39R:R:I254 R:R:Y304 58.57614.51NoYes089
40R:R:I254 R:R:Q250 57.21885.49NoYes088
41R:R:M247 R:R:Q250 50.08086.8NoYes188
42R:R:L251 R:R:N220 20.25484.12NoNo089
43R:R:T223 R:R:V137 17.82164.76YesNo088
44R:R:Y188 R:R:Y201 10.75657.94YesYes166
45R:R:Q180 R:R:W185 19.384721.9NoYes188
46R:R:Q180 R:R:T190 17.45437.09NoYes187
47R:R:L202 R:R:T190 10.63675.9NoYes067
48R:R:G273 R:R:L202 18.44943.42NoNo046
49R:R:G273 R:R:I193 12.34561.76NoYes041
50R:R:L202 R:R:Y188 11.24114.69NoYes066
51R:R:M255 R:R:N220 13.54925.61NoNo089
52R:R:L217 R:R:M255 11.30364.24NoNo058
53R:R:L227 R:R:V137 15.78182.98NoNo088
54R:R:D77 R:R:N44 18.64486.73YesYes099
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:S33 7.32 1 Yes No 0 7 0 1
L:L:?1 R:R:H81 10.74 1 Yes Yes 0 8 0 1
L:L:?1 R:R:N84 3.82 1 Yes Yes 0 6 0 1
L:L:?1 R:R:Y92 7.35 1 Yes Yes 0 8 0 1
L:L:?1 R:R:M115 4.92 1 Yes No 0 8 0 1
L:L:?1 R:R:T184 5.13 1 Yes No 0 9 0 1
L:L:?1 R:R:W185 3.97 1 Yes Yes 0 8 0 1
L:L:?1 R:R:L287 3.86 1 Yes No 0 6 0 1
L:L:?1 R:R:L290 5.78 1 Yes No 0 7 0 1
L:L:?1 R:R:T294 7.18 1 Yes No 0 9 0 1
L:L:?1 R:R:Q297 6.49 1 Yes Yes 0 8 0 1
R:R:V30 R:R:Y92 8.83 0 No Yes 6 8 2 1
R:R:G85 R:R:M37 5.24 0 No No 7 7 1 2
R:R:G40 R:R:H81 4.77 1 No Yes 9 8 2 1
R:R:G40 R:R:I298 5.29 1 No No 9 8 2 2
R:R:D77 R:R:N44 6.73 1 Yes Yes 9 9 2 2
R:R:H81 R:R:N44 3.83 1 Yes Yes 8 9 1 2
R:R:D77 R:R:P122 6.44 1 Yes No 9 9 2 2
R:R:D77 R:R:Q297 10.44 1 Yes Yes 9 8 2 1
R:R:H81 R:R:I298 5.3 1 Yes No 8 8 1 2
R:R:F111 R:R:N84 4.83 1 Yes Yes 6 6 2 1
R:R:C114 R:R:N84 4.72 0 No Yes 4 6 2 1
R:R:M115 R:R:N84 8.41 1 No Yes 8 6 1 1
R:R:N84 R:R:S118 7.45 1 Yes No 6 7 1 2
R:R:K96 R:R:Y92 4.78 1 No Yes 5 8 2 1
R:R:T184 R:R:Y92 13.73 1 No Yes 9 8 1 1
R:R:K96 R:R:T184 4.5 1 No No 5 9 2 1
R:R:F111 R:R:M115 4.98 1 Yes No 6 8 2 1
R:R:P122 R:R:Q297 9.47 1 No Yes 9 8 2 1
R:R:Q180 R:R:W185 21.9 1 No Yes 8 8 2 1
R:R:S182 R:R:W185 3.71 0 Yes Yes 8 8 2 1
R:R:L287 R:R:S182 6.01 0 No Yes 6 8 1 2
R:R:F187 R:R:W185 6.01 1 Yes Yes 8 8 2 1
R:R:L290 R:R:W185 9.11 1 No Yes 7 8 1 1
R:R:N296 R:R:W262 12.43 1 Yes Yes 9 9 2 2
R:R:Q297 R:R:W262 6.57 1 Yes Yes 8 9 1 2
R:R:F265 R:R:L290 7.31 0 No No 8 7 2 1
R:R:L287 R:R:R291 6.07 0 No No 6 8 1 2
R:R:T294 R:R:W295 4.85 0 No Yes 9 5 1 2
R:R:I298 R:R:W295 8.22 1 No Yes 8 5 2 2
R:R:N296 R:R:Q297 9.24 1 Yes Yes 9 8 2 1
R:R:A88 R:R:S33 3.42 0 No No 8 7 2 1
L:L:?1 R:R:G85 2.38 1 Yes No 0 7 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8XJL_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.52
Number of Linked Nodes 260
Number of Links 292
Number of Hubs 38
Number of Links mediated by Hubs 138
Number of Communities 2
Number of Nodes involved in Communities 51
Number of Links involved in Communities 77
Path Summary
Number Of Nodes in MetaPath 55
Number Of Links MetaPath 54
Number of Shortest Paths 69873
Length Of Smallest Path 3
Average Path Length 12.9422
Length of Longest Path 25
Minimum Path Strength 1.26
Average Path Strength 6.12174
Maximum Path Strength 18.03
Minimum Path Correlation 0.7
Average Path Correlation 0.916953
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 5.55556
Average % Of Corr. Nodes 45.5788
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 54.0058
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeUGU
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeUGU
NameDinoprost
SynonymsDinoprost; Prostaglandin F2a; PGF2alpha
Identifier
FormulaC20 H34 O5
Molecular Weight354.481
SMILES
PubChem5280363
Formal Charge0
Total Atoms59
Total Chiral Atoms5
Total Bonds59
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP43088
Sequence
>8XJL_nogp_Chain_R
NRLSVFFSV IFMTVGILS NSLAIAILM KAYQRFRQK SKASFLLLA 
SGLVITDFF GHLINGAIA VFVYASDKE WIRFDQSNV LCSIFGICM 
VFSGLCPLL LGSVMAIER CIGVTKPIF HSTKITSKH VKMMLSGVC 
LFAVFIALL PILGHRDYK IQASRTWCF YNTEDIKDW EDRFYLLLF 
SFLGLLALG VSLLCNAIT GITLLRVKF SHHLEMVIQ LLAIMCVSC 
ICWSPFLVT MANIGINGN HSLETCETT LFALRMATW NQILDPWVY 
ILLRKAVLK NLYKLASQ


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8XJKALipidProstanoidFP-alphaHomo sapiensCloprosetnol-chim(NtGi1-Gs-CtGq)/β1/γ22.632024-02-28doi.org/10.1016/j.celrep.2024.113893
8XJK (No Gprot) ALipidProstanoidFP-alphaHomo sapiensCloprosetnol-2.632024-02-28doi.org/10.1016/j.celrep.2024.113893
8XJMALipidProstanoidFP-alphaHomo sapiensLatanoprost-chim(NtGi2-Gs-CtGq)/β1/γ22.852024-02-28To be published
8XJM (No Gprot) ALipidProstanoidFP-alphaHomo sapiensLatanoprost-2.852024-02-28To be published
8XJLALipidProstanoidFP-alphaHomo sapiensPGF2-α-chim(NtGi2-Gs-CtGq)/β1/γ22.772024-02-28To be published
8XJL (No Gprot) ALipidProstanoidFP-alphaHomo sapiensPGF2-α-2.772024-02-28To be published
8IQ6ALipidProstanoidFP-alphaHomo sapiensLatanoprost-chim(NtGi1-Gs-CtGq)/β1/γ23.42024-01-3110.1038/s41467-023-43922-8
8IQ6 (No Gprot) ALipidProstanoidFP-alphaHomo sapiensLatanoprost-3.42024-01-3110.1038/s41467-023-43922-8
8IQ4ALipidProstanoidFP-alphaHomo sapiensCarboprost-chim(NtGi1-Gs-CtGq)/β1/γ22.72024-01-3110.1038/s41467-023-43922-8
8IQ4 (No Gprot) ALipidProstanoidFP-alphaHomo sapiensCarboprost-2.72024-01-3110.1038/s41467-023-43922-8
8IUMALipidProstanoidFP-alphaHomo sapiensTafluprost acid-chim(NtGi1-Gs-CtGq)/β1/γ23.142023-07-1210.1038/s41467-023-38411-x
8IUM (No Gprot) ALipidProstanoidFP-alphaHomo sapiensTafluprost acid-3.142023-07-1210.1038/s41467-023-38411-x
8IULALipidProstanoidFP-alphaHomo sapiensLatanoprost-chim(NtGi1-Gs-CtGq)/β1/γ22.782023-07-1210.1038/s41467-023-38411-x
8IUL (No Gprot) ALipidProstanoidFP-alphaHomo sapiensLatanoprost-2.782023-07-1210.1038/s41467-023-38411-x
8IUKALipidProstanoidFP-alphaHomo sapiensPGF2-α-chim(NtGi1-Gs-CtGq)/β1/γ22.672023-07-1210.1038/s41467-023-38411-x
8IUK (No Gprot) ALipidProstanoidFP-alphaHomo sapiensPGF2-α-2.672023-07-1210.1038/s41467-023-38411-x




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8XJL_nogp.zip



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