Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 6.377371910
2R:R:I41 3.135406
3R:R:L51 4.8175408
4R:R:F66 4.3325407
5R:R:L67 3.4925408
6R:R:L69 4.5825407
7R:R:V74 4.6475408
8R:R:Y92 8.6175418
9R:R:W98 10.6975425
10R:R:F101 7.83524
11R:R:F111 9.1625416
12R:R:M115 6.5275418
13R:R:V116 6.26418
14R:R:E132 6.5625409
15R:R:R133 4.925439
16R:R:F142 6.845404
17R:R:H143 6.0025408
18R:R:Y177 6.815617
19R:R:T184 7.866519
20R:R:W185 6.80167618
21R:R:F187 5.68857718
22R:R:Y188 7.14857716
23R:R:L208 4.534555
24R:R:N220 5.095469
25R:R:T223 3.2275408
26R:R:L227 2.8075408
27R:R:W262 8.89167619
28R:R:F265 5.0025418
29R:R:L290 5.19417
30R:R:R291 8.83418
31R:R:Q297 5.506518
32R:R:W302 8.6625406
33R:R:Y304 7.1675409
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:R291 40.1943.15YesYes108
2R:R:F36 R:R:R291 38.56574.28NoYes088
3L:L:?1 R:R:T294 39.21245.73YesNo009
4R:R:F36 R:R:T294 38.33855.19NoNo089
5R:R:F36 R:R:W295 75.025511.02NoNo085
6R:R:L299 R:R:W295 59.66915.69NoNo075
7R:R:L299 R:R:W302 57.75253.42NoYes076
8R:R:L306 R:R:W302 50.476219.36NoYes086
9R:R:A47 R:R:L306 46.54393.15NoNo098
10R:R:A47 R:R:V74 44.5695.09NoYes098
11R:R:N44 R:R:V74 16.65845.91NoYes098
12R:R:F78 R:R:N44 12.5286.04NoNo079
13R:R:I298 R:R:W295 14.32829.4NoNo085
14R:R:L51 R:R:V74 22.46082.98YesYes088
15R:R:I305 R:R:L51 12.17858.56NoYes088
16R:R:I305 R:R:I50 10.10462.94NoNo088
17L:L:?1 R:R:W262 52.50073.69YesYes109
18R:R:N296 R:R:W262 50.502510.17NoYes199
19R:R:D300 R:R:N296 10012.12NoNo099
20R:R:D300 R:R:Y304 99.03299.2NoYes099
21R:R:M129 R:R:Y304 48.5483.59NoYes099
22R:R:F66 R:R:M129 32.43724.98YesNo079
23R:R:F66 R:R:L67 18.09152.44YesYes078
24L:L:?1 R:R:Q297 56.87863.45YesYes108
25R:R:N296 R:R:Q297 50.49375.28NoYes198
26R:R:A64 R:R:L67 10.74254.73NoYes078
27R:R:E132 R:R:F66 19.45183.5YesYes097
28R:R:E132 R:R:H143 29.74287.39YesYes098
29R:R:L69 R:R:M129 20.35487.07YesNo079
30R:R:E132 R:R:L69 20.06935.3YesYes097
31L:L:?1 R:R:F111 19.583.16YesYes106
32R:R:F111 R:R:I87 22.227718.84YesNo066
33R:R:I87 R:R:V91 20.8821.54NoNo067
34R:R:F101 R:R:V91 11.1597.87YesNo247
35L:L:?1 R:R:F187 51.22195.53YesYes108
36R:R:F187 R:R:Y188 25.029910.32YesYes186
37R:R:Y188 R:R:Y201 16.32642.98YesNo066
38R:R:F200 R:R:Y201 13.3644.13NoNo056
39R:R:F200 R:R:W196 12.36498.02NoNo051
40R:R:D195 R:R:W196 11.365.58NoNo011
41R:R:D195 R:R:E197 10.34927.8NoNo012
42R:R:F187 R:R:V116 10.71635.24YesYes188
43R:R:F205 R:R:L120 12.88634.87NoNo086
44R:R:I254 R:R:Y304 47.583812.09NoYes089
45R:R:I254 R:R:R133 37.47053.76NoYes389
46R:R:L251 R:R:R133 42.67864.86NoYes089
47R:R:L251 R:R:N220 17.92844.12NoYes089
48R:R:L251 R:R:T223 25.4262.95NoYes088
49R:R:T223 R:R:V137 17.63134.76YesNo088
50R:R:H143 R:R:I147 22.99965.3YesNo085
51R:R:F142 R:R:I147 18.4095.02YesNo045
52L:L:?1 R:R:W185 14.1015.17YesYes108
53R:R:Q180 R:R:W185 12.909613.14NoYes188
54R:R:F187 R:R:Q180 16.05253.51YesNo188
55R:R:Q180 R:R:T190 26.77179.92NoNo087
56R:R:M255 R:R:N220 13.52425.61NoYes089
57R:R:L217 R:R:M255 10.5594.24NoNo058
58R:R:L227 R:R:V137 16.16612.98YesNo088
59R:R:I272 R:R:T190 15.71763.04NoNo067
60R:R:I272 R:R:T268 13.48933.04NoNo065
61R:R:E281 R:R:T268 11.255112.7NoNo015
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:S33 8.76 1 Yes No 0 7 0 1
L:L:?1 R:R:H81 20 1 Yes No 0 8 0 1
L:L:?1 R:R:N84 7.12 1 Yes No 0 6 0 1
L:L:?1 R:R:G85 4.43 1 Yes No 0 7 0 1
L:L:?1 R:R:Y92 6.84 1 Yes Yes 0 8 0 1
L:L:?1 R:R:F111 3.16 1 Yes Yes 0 6 0 1
L:L:?1 R:R:M115 11.91 1 Yes Yes 0 8 0 1
L:L:?1 R:R:S118 3.89 1 Yes No 0 7 0 1
L:L:?1 R:R:G119 3.33 1 Yes No 0 7 0 1
L:L:?1 R:R:T184 8.6 1 Yes Yes 0 9 0 1
L:L:?1 R:R:W185 5.17 1 Yes Yes 0 8 0 1
L:L:?1 R:R:F187 5.53 1 Yes Yes 0 8 0 1
L:L:?1 R:R:W262 3.69 1 Yes Yes 0 9 0 1
L:L:?1 R:R:F265 4.74 1 Yes Yes 0 8 0 1
L:L:?1 R:R:L287 4.49 1 Yes No 0 6 0 1
L:L:?1 R:R:L290 7.18 1 Yes Yes 0 7 0 1
L:L:?1 R:R:R291 3.15 1 Yes Yes 0 8 0 1
L:L:?1 R:R:T294 5.73 1 Yes No 0 9 0 1
L:L:?1 R:R:Q297 3.45 1 Yes Yes 0 8 0 1
R:R:S29 R:R:Y92 3.82 0 No Yes 7 8 2 1
R:R:V30 R:R:Y92 8.83 0 No Yes 6 8 2 1
R:R:F32 R:R:R291 18.17 0 No Yes 4 8 2 1
R:R:A88 R:R:S33 3.42 0 No No 8 7 2 1
R:R:F36 R:R:R291 4.28 0 No Yes 8 8 2 1
R:R:F36 R:R:T294 5.19 0 No No 8 9 2 1
R:R:G80 R:R:S118 3.71 0 No No 8 7 2 1
R:R:H81 R:R:Q297 4.95 1 No Yes 8 8 1 1
R:R:F111 R:R:N84 9.67 1 Yes No 6 6 1 1
R:R:C114 R:R:N84 4.72 0 No No 4 6 2 1
R:R:F111 R:R:I87 18.84 1 Yes No 6 6 1 2
R:R:T184 R:R:Y92 14.98 1 Yes Yes 9 8 1 1
R:R:K96 R:R:T184 4.5 0 No Yes 5 9 2 1
R:R:F111 R:R:M115 4.98 1 Yes Yes 6 8 1 1
R:R:F187 R:R:M115 4.98 1 Yes Yes 8 8 1 1
R:R:L290 R:R:M115 4.24 1 Yes Yes 7 8 1 1
R:R:F187 R:R:V116 5.24 1 Yes Yes 8 8 1 2
R:R:V116 R:R:Y188 11.36 1 Yes Yes 8 6 2 2
R:R:P122 R:R:Q297 9.47 0 No Yes 9 8 2 1
R:R:L123 R:R:W262 21.64 0 No Yes 7 9 2 1
R:R:Q180 R:R:W185 13.14 1 No Yes 8 8 2 1
R:R:F187 R:R:Q180 3.51 1 Yes No 8 8 1 2
R:R:S182 R:R:T184 6.4 1 No Yes 8 9 2 1
R:R:S182 R:R:W185 4.94 1 No Yes 8 8 2 1
R:R:T184 R:R:W185 4.85 1 Yes Yes 9 8 1 1
R:R:F187 R:R:W185 7.02 1 Yes Yes 8 8 1 1
R:R:L290 R:R:W185 5.69 1 Yes Yes 7 8 1 1
R:R:F187 R:R:Y188 10.32 1 Yes Yes 8 6 1 2
R:R:F187 R:R:F205 3.22 1 Yes No 8 8 1 2
R:R:F205 R:R:Y188 6.19 1 No Yes 8 6 2 2
R:R:L266 R:R:W262 5.69 0 No Yes 7 9 2 1
R:R:A293 R:R:W262 7.78 0 No Yes 8 9 2 1
R:R:N296 R:R:W262 10.17 1 No Yes 9 9 2 1
R:R:Q297 R:R:W262 4.38 1 Yes Yes 8 9 1 1
R:R:F265 R:R:M269 7.46 1 Yes No 8 7 1 2
R:R:A289 R:R:F265 4.16 0 No Yes 7 8 2 1
R:R:F265 R:R:L290 3.65 1 Yes Yes 8 7 1 1
R:R:L287 R:R:R291 9.72 1 No Yes 6 8 1 1
R:R:N296 R:R:Q297 5.28 1 No Yes 9 8 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8IUL_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.15
Number of Linked Nodes 281
Number of Links 306
Number of Hubs 33
Number of Links mediated by Hubs 131
Number of Communities 6
Number of Nodes involved in Communities 40
Number of Links involved in Communities 59
Path Summary
Number Of Nodes in MetaPath 62
Number Of Links MetaPath 61
Number of Shortest Paths 66144
Length Of Smallest Path 3
Average Path Length 13.851
Length of Longest Path 28
Minimum Path Strength 1.36
Average Path Strength 6.39979
Maximum Path Strength 15.955
Minimum Path Correlation 0.7
Average Path Correlation 0.9292
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4
Average % Of Corr. Nodes 52.0553
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 39.0142
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
Code7WT
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
Code7WT
NameLatanoprost acid
Synonyms7-[3,5-Dihydroxy-2-(3-hydroxy-5-phenylpentyl)cyclopentyl]hept-5-enoic acid
Identifier
FormulaC23 H34 O5
Molecular Weight390.513
SMILES
PubChem6441636
Formal Charge0
Total Atoms62
Total Chiral Atoms5
Total Bonds63
Total Aromatic Bonds6

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP43088
Sequence
>8IUL_nogp_Chain_R
SVFFSVIFM TVGILSNSL AIAILMKAY QRFRQKSKA SFLLLASGL 
VITDFFGHL INGAIAVFV YASDKEWIR FDQSNVLCS IFGICMVFS 
GLCPLLLGS VMAIERCIG VTKPIFHST KITSKHVKM MLSGVCLFA 
VFIALLPIL GHRDYKIQA SRTWCFYNT EDIKDWEDR FYLLLFSFL 
GLLALGVSL LCNAITGIT LLRVKFKSQ QHGRSHHLE MVIQLLAIM 
CVSCICWSP FLVTMANIG INGNHSLET CETTLFALR MATWNQILD 
PWVYILLRK AVLKNLYKL ASQCC


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8XJKALipidProstanoidFP-alphaHomo sapiensCloprosetnol-chim(NtGi1-Gs-CtGq)/β1/γ22.632024-02-28doi.org/10.1016/j.celrep.2024.113893
8XJK (No Gprot) ALipidProstanoidFP-alphaHomo sapiensCloprosetnol-2.632024-02-28doi.org/10.1016/j.celrep.2024.113893
8XJMALipidProstanoidFP-alphaHomo sapiensLatanoprost-chim(NtGi2-Gs-CtGq)/β1/γ22.852024-02-28To be published
8XJM (No Gprot) ALipidProstanoidFP-alphaHomo sapiensLatanoprost-2.852024-02-28To be published
8XJLALipidProstanoidFP-alphaHomo sapiensPGF2-α-chim(NtGi2-Gs-CtGq)/β1/γ22.772024-02-28To be published
8XJL (No Gprot) ALipidProstanoidFP-alphaHomo sapiensPGF2-α-2.772024-02-28To be published
8IQ6ALipidProstanoidFP-alphaHomo sapiensLatanoprost-chim(NtGi1-Gs-CtGq)/β1/γ23.42024-01-3110.1038/s41467-023-43922-8
8IQ6 (No Gprot) ALipidProstanoidFP-alphaHomo sapiensLatanoprost-3.42024-01-3110.1038/s41467-023-43922-8
8IQ4ALipidProstanoidFP-alphaHomo sapiensCarboprost-chim(NtGi1-Gs-CtGq)/β1/γ22.72024-01-3110.1038/s41467-023-43922-8
8IQ4 (No Gprot) ALipidProstanoidFP-alphaHomo sapiensCarboprost-2.72024-01-3110.1038/s41467-023-43922-8
8IUMALipidProstanoidFP-alphaHomo sapiensTafluprost acid-chim(NtGi1-Gs-CtGq)/β1/γ23.142023-07-1210.1038/s41467-023-38411-x
8IUM (No Gprot) ALipidProstanoidFP-alphaHomo sapiensTafluprost acid-3.142023-07-1210.1038/s41467-023-38411-x
8IULALipidProstanoidFP-alphaHomo sapiensLatanoprost-chim(NtGi1-Gs-CtGq)/β1/γ22.782023-07-1210.1038/s41467-023-38411-x
8IUL (No Gprot) ALipidProstanoidFP-alphaHomo sapiensLatanoprost-2.782023-07-1210.1038/s41467-023-38411-x
8IUKALipidProstanoidFP-alphaHomo sapiensPGF2-α-chim(NtGi1-Gs-CtGq)/β1/γ22.672023-07-1210.1038/s41467-023-38411-x
8IUK (No Gprot) ALipidProstanoidFP-alphaHomo sapiensPGF2-α-2.672023-07-1210.1038/s41467-023-38411-x




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8IUL_nogp.zip



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