Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:Y47 4.175407
2R:R:N58 4.1409
3R:R:N76 2.9408
4R:R:I77 4.7475446
5R:R:Y78 5.07667647
6R:R:N81 2.9825409
7R:R:D86 3.36509
8R:R:Y89 6.295406
9R:R:W105 8.345618
10R:R:F107 5.015417
11R:R:R113 5.1425416
12R:R:Y138 7.075408
13R:R:S167 2.595407
14R:R:V180 2.742515
15R:R:W190 3.77429726
16R:R:W197 5.72423
17R:R:Y204 4.62473
18R:R:F210 4.0225488
19R:R:Y221 3.5275409
20R:R:V250 2.4625497
21R:R:W261 4.91488
22R:R:F265 3.885487
23R:R:F287 3.895403
24R:R:N300 4.8325409
25L:L:?1 5.4025430
26L:L:C2 6.08430
27L:L:F3 4.735400
28L:L:K5 4.1725400
29L:L:T8 5.022530
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:C51 R:R:M90 32.94663.24NoNo066
2R:R:C51 R:R:L93 24.87996.35NoNo067
3R:R:L93 R:R:Y47 16.361.17NoYes077
4R:R:M90 R:R:V50 34.50563.04NoNo067
5R:R:D86 R:R:S297 94.21735.89YesNo099
6R:R:S297 R:R:Y89 94.67052.54NoYes096
7R:R:Y294 R:R:Y89 37.56918.94NoYes076
8R:R:V50 R:R:Y294 36.04641.26NoNo077
9R:R:D86 R:R:N300 86.72162.69YesYes099
10R:R:I77 R:R:M71 11.46564.37YesNo067
11R:R:I77 R:R:Y78 14.78298.46YesYes467
12R:R:M133 R:R:Y78 33.12794.79NoYes087
13R:R:M133 R:R:Y304 70.93273.59NoNo089
14R:R:L130 R:R:Y304 73.08982.34NoNo099
15R:R:L130 R:R:N300 76.08992.75NoYes099
16R:R:D86 R:R:L82 11.13932.71YesNo099
17R:R:F124 R:R:S167 14.71042.64NoYes067
18R:R:F124 R:R:Q123 19.93118.2NoNo067
19R:R:Q123 R:R:Y89 1007.89NoYes076
20L:L:T6 R:R:V290 79.76073.17NoNo005
21L:L:K5 R:R:V290 80.54931.52YesNo005
22L:L:?4 L:L:K5 86.531310.07NoYes000
23L:L:?4 R:R:Q123 97.81562.11NoNo007
24R:R:Q99 R:R:W105 45.65396.57NoYes048
25R:R:N100 R:R:Q99 77.222910.56NoNo044
26L:L:T6 R:R:N100 78.12924.39NoNo004
27R:R:Q99 R:R:T185 42.70822.83NoNo044
28R:R:C112 R:R:W105 15.58969.14NoYes198
29R:R:C186 R:R:W105 15.589619.59NoYes198
30R:R:C112 R:R:V180 13.91283.42NoYes195
31R:R:C186 R:R:V180 13.91281.71NoYes195
32R:R:R113 R:R:V180 14.16662.62YesYes165
33R:R:I217 R:R:Y221 26.91023.63NoYes089
34R:R:R137 R:R:Y221 44.6663.09NoYes099
35R:R:M133 R:R:R137 46.14342.48NoNo089
36R:R:I217 R:R:S134 18.39033.1NoNo089
37R:R:C220 R:R:S134 12.9435.16NoNo089
38R:R:C220 R:R:Y138 11.14842.69NoYes088
39L:L:F3 R:R:F201 12.73455.36YesNo005
40L:L:?4 L:L:F3 37.20665.8NoYes000
41L:L:F3 R:R:W190 19.75894.01YesYes006
42R:R:N187 R:R:T185 38.79274.39NoNo054
43L:L:C7 R:R:N187 37.26094.72NoNo005
44R:R:N296 R:R:W261 16.63197.91NoYes098
45R:R:N296 R:R:N300 23.556612.26NoYes099
46R:R:V250 R:R:Y221 14.32075.05YesYes079
47R:R:L276 R:R:N271 14.16662.75NoNo014
48R:R:N271 R:R:Y286 17.52025.81NoNo044
49L:L:C2 R:R:Y286 10.40516.72YesNo304
50L:L:C2 L:L:C7 17.08515.46YesNo300
51L:L:T8 R:R:Y286 10.31456.24YesNo304
52L:L:C7 L:L:T8 18.66221.69NoYes300
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:Q123 R:R:Y89 7.89 0 No Yes 7 6 1 2
L:L:T6 R:R:L96 4.42 0 No No 0 6 0 1
R:R:N100 R:R:Q99 10.56 0 No No 4 4 1 2
R:R:Q99 R:R:T185 2.83 0 No No 4 4 2 2
L:L:T6 R:R:N100 4.39 0 No No 0 4 0 1
R:R:D119 R:R:G120 3.35 0 No No 6 5 1 2
R:R:F124 R:R:Q123 8.2 0 No No 6 7 2 1
L:L:?4 R:R:Q123 2.11 0 No No 0 7 0 1
R:R:F177 R:R:W190 6.01 2 No Yes 4 6 2 1
R:R:F177 R:R:P191 7.22 2 No No 4 4 2 2
R:R:F177 R:R:W197 7.02 2 No Yes 4 3 2 2
R:R:A178 R:R:W190 5.19 2 No Yes 5 6 2 1
R:R:A178 R:R:P191 3.74 2 No No 5 4 2 2
R:R:N187 R:R:T185 4.39 0 No No 5 4 1 2
L:L:C7 R:R:N187 4.72 3 No No 0 5 0 1
R:R:A188 R:R:W190 2.59 0 No Yes 3 6 2 1
R:R:P191 R:R:W190 2.7 2 No Yes 4 6 2 1
R:R:W190 R:R:W197 4.69 2 Yes Yes 6 3 1 2
L:L:F3 R:R:W190 4.01 0 Yes Yes 0 6 0 1
R:R:F201 R:R:Y204 8.25 7 No Yes 5 3 1 2
R:R:F201 R:R:T205 5.19 7 No No 5 4 1 2
L:L:F3 R:R:F201 5.36 0 Yes No 0 5 0 1
R:R:I202 R:R:L272 2.85 0 No No 5 4 1 2
L:L:F3 R:R:I202 3.77 0 Yes No 0 5 0 1
R:R:T205 R:R:Y204 6.24 7 No Yes 4 3 2 2
R:R:F264 R:R:N268 8.46 0 No No 7 5 1 2
R:R:F264 R:R:V289 2.62 0 No No 7 7 1 2
L:L:K5 R:R:F264 3.72 0 Yes No 0 7 0 1
R:R:N271 R:R:Y286 5.81 0 No No 4 4 2 1
L:L:?1 R:R:S282 6.36 3 Yes No 0 5 0 1
L:L:T8 R:R:A283 1.68 3 Yes No 0 4 0 1
L:L:C2 R:R:Y286 6.72 3 Yes No 0 4 0 1
L:L:T8 R:R:Y286 6.24 3 Yes No 0 4 0 1
L:L:T6 R:R:V290 3.17 0 No No 0 5 0 1
L:L:K5 R:R:V290 1.52 0 Yes No 0 5 0 1
L:L:K5 R:R:D119 1.38 0 Yes No 0 6 0 1
R:R:V194 R:R:W190 1.23 0 No Yes 2 6 2 1
L:L:?1 R:R:Q278 1.13 3 Yes No 0 1 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8X8N_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 1.56
Number of Linked Nodes 231
Number of Links 238
Number of Hubs 29
Number of Links mediated by Hubs 111
Number of Communities 9
Number of Nodes involved in Communities 37
Number of Links involved in Communities 45
Path Summary
Number Of Nodes in MetaPath 53
Number Of Links MetaPath 52
Number of Shortest Paths 21695
Length Of Smallest Path 3
Average Path Length 13.8344
Length of Longest Path 32
Minimum Path Strength 1.19
Average Path Strength 4.55618
Maximum Path Strength 14.66
Minimum Path Correlation 0.7
Average Path Correlation 0.924253
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4
Average % Of Corr. Nodes 45.5386
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 31.7796
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeDPN
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeDPN
NameD-Phenylalanine
SynonymsD-Phenylalanine
Identifier
FormulaC9 H11 N O2
Molecular Weight165.189
SMILES
PubChem71567
Formal Charge0
Total Atoms23
Total Chiral Atoms1
Total Bonds23
Total Aromatic Bonds6

CodeDTR
PDB ResiduesL:L:?4
Environment DetailsOpen EMBL-EBI Page
CodeDTR
NameD-Tryptophan
Synonyms
  • D-Tryptophan
  • (2R)-2-amino-3-(1H-indol-3-yl)propanoic acid
  • (R)-tryptophan
  • DTR
Identifier
FormulaC11 H12 N2 O2
Molecular Weight204.225
SMILES
PubChem6923517
Formal Charge0
Total Atoms27
Total Chiral Atoms1
Total Bonds28
Total Aromatic Bonds10

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP35346
Sequence
>8X8N_nogp_Chain_R
VPVLYLLVC AAGLGGNTL VIYVVLRFA KMKTVTNIY ILNLAVADV 
LYMLGLPFL ATQNAASFW PFGPVLCRL VMTLDGVNQ FTSVFCLTV 
MSVDRYLAV VHPLSSARW RRPRVAKLA SAAAWVLSL CMSLPLLVF 
ADVQEGGTC NASWPEPVG LWGAVFIIY TAVLGFFAP LLVICLCYL 
LIVVKVRAA GVRVRRSER KVTRMVLVL VLVFAGCWL PFFTVNIVN 
LAVALPQEP ASAGLYFFV VILSYANSC ANPVLYGFL SDNFRQSFQ


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8ZBEAPeptideSomatostatinSST5Homo sapiensOctreotide-Gi1/β1/γ13.242024-07-10doi.org/10.1038/s41401-024-01314-8
8ZBE (No Gprot) APeptideSomatostatinSST5Homo sapiensOctreotide-3.242024-07-10doi.org/10.1038/s41401-024-01314-8
8ZCJAPeptideSomatostatinSST5Homo sapiensPasireotide-Gi1/β1/γ13.092024-07-10doi.org/10.1038/s41401-024-01314-8
8ZCJ (No Gprot) APeptideSomatostatinSST5Homo sapiensPasireotide-3.092024-07-10doi.org/10.1038/s41401-024-01314-8
8X8LAPeptideSomatostatinSST5Homo sapiensCortistatin-chim(NtGi1-Gs-CtGi1)/β1/γ22.72024-06-12doi.org/10.1073/pnas.2321710121
8X8L (No Gprot) APeptideSomatostatinSST5Homo sapiensCortistatin-2.72024-06-12doi.org/10.1073/pnas.2321710121
8X8NAPeptideSomatostatinSST5Homo sapiensOctreotide-chim(NtGi1-Gs-CtGi1)/β1/γ22.92024-06-12doi.org/10.1073/pnas.2321710121
8X8N (No Gprot) APeptideSomatostatinSST5Homo sapiensOctreotide-2.92024-06-12doi.org/10.1073/pnas.2321710121
8ZBJAPeptideSomatostatinSST5Homo sapiensSomatostatin-14-Gi1/β1/γ22.942025-04-30To be published
8ZBJ (No Gprot) APeptideSomatostatinSST5Homo sapiensSomatostatin-14-2.942025-04-30To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8X8N_nogp.zip



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