Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 10.2367610
2L:L:?2 8.67143710
3L:L:K3 10.2410
4L:L:?5 9.33143710
5R:R:C51 3.92406
6R:R:L55 6.2775426
7R:R:V65 8.26407
8R:R:L80 5.3925436
9R:R:D86 6.56167619
10R:R:Y89 6.59516
11R:R:F104 4.75414
12R:R:W105 4.7025408
13R:R:C112 3.95459
14R:R:V121 5.8925405
15R:R:N122 5.65408
16R:R:Q123 7.606517
17R:R:F124 5.855416
18R:R:T125 4.3525407
19R:R:R137 6.0375419
20R:R:R151 7.396546
21R:R:T185 7.17414
22R:R:F201 4.848505
23R:R:I202 3.5275415
24R:R:P213 3.175408
25R:R:Y221 9.6725419
26R:R:V225 1.57475
27R:R:F257 7.075409
28R:R:W261 6.3475408
29R:R:F264 5.092517
30R:R:N268 5.964515
31R:R:L276 5.3675411
32R:R:Y294 6.7507
33R:R:N296 7.3025419
34R:R:N300 7.485419
35R:R:L303 2.58408
36R:R:Y304 7.03333619
37R:R:F311 9.335408
38R:R:S314 4.8675405
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 L:L:?2 67.35418.65YesYes100
2L:L:?2 L:L:K3 46.126612.31YesYes100
3L:L:?2 R:R:Q123 68.44058.45YesYes107
4L:L:?2 R:R:F201 30.59313.87YesYes005
5L:L:?1 R:R:I202 11.51094.62YesYes105
6R:R:F201 R:R:I202 18.9563.77YesYes055
7L:L:K3 R:R:Y89 47.10845.97YesYes106
8R:R:Q123 R:R:Y89 57.29286.76YesYes176
9L:L:?1 L:L:?6 60.222821.48YesNo100
10L:L:?5 L:L:?6 58.914831.86YesNo100
11L:L:?5 L:L:Y4 1003.69YesNo100
12L:L:Y4 R:R:Q99 34.504910.15NoNo104
13L:L:Y4 R:R:T185 62.423416.23NoYes104
14L:L:?1 R:R:N271 10.9236.66YesNo104
15R:R:N268 R:R:Y286 59.89044.65YesNo154
16R:R:N122 R:R:Y89 56.10175.81YesYes086
17R:R:L88 R:R:N122 25.39479.61NoYes078
18R:R:L88 R:R:L91 24.0994.15NoNo074
19R:R:L91 R:R:M90 22.98795.65NoNo046
20R:R:M90 R:R:Y294 25.72717.18NoYes067
21R:R:L93 R:R:Y294 18.266614.07NoYes077
22R:R:L55 R:R:M90 11.547811.31YesNo066
23R:R:S297 R:R:Y89 57.11436.36NoYes196
24R:R:D86 R:R:S297 40.112611.78YesNo199
25R:R:D86 R:R:N58 17.39876.73YesNo099
26R:R:N58 R:R:V87 13.58535.91NoNo097
27R:R:L55 R:R:V87 12.47115.96YesNo067
28R:R:N122 R:R:V121 33.03074.43YesYes085
29R:R:S167 R:R:V121 52.5539.7NoYes075
30R:R:S167 R:R:T125 51.11887.99NoYes077
31R:R:T125 R:R:W164 47.91486.06YesNo079
32R:R:V84 R:R:W164 54.9664.9NoNo069
33R:R:L80 R:R:V84 51.66054.47YesNo366
34R:R:L80 R:R:V65 53.0274.47YesYes067
35R:R:F311 R:R:V65 30.74399.18YesYes087
36R:R:F306 R:R:F311 11.11386.43NoYes078
37R:R:F201 R:R:L174 29.86377.31YesNo053
38R:R:L174 R:R:S171 29.21734.5NoNo037
39R:R:S171 R:R:V121 28.87576.46NoYes075
40R:R:N76 R:R:V65 16.416914.78NoYes087
41R:R:M71 R:R:N76 12.77281.4NoNo078
42R:R:K72 R:R:M71 10.94155.76NoNo067
43R:R:D86 R:R:L82 20.3784.07YesNo199
44R:R:C129 R:R:L82 29.9969.52NoNo089
45R:R:C129 R:R:V132 20.17173.42NoNo087
46R:R:V132 R:R:Y78 18.86987.57NoNo077
47R:R:D136 R:R:Y78 16.24458.05NoNo087
48R:R:C129 R:R:N81 13.25297.87NoNo089
49R:R:D86 R:R:N300 19.0335.39YesYes199
50R:R:N296 R:R:S297 16.7775.96YesNo199
51R:R:N296 R:R:N300 17.94659.54YesYes199
52R:R:F104 R:R:Q99 31.63659.37YesNo144
53R:R:F104 R:R:W105 50.8912YesYes048
54R:R:P106 R:R:W105 25.49324.05NoYes038
55R:R:P106 R:R:V110 19.128410.6NoNo032
56R:R:V110 R:R:V115 12.75743.21NoNo025
57R:R:F104 R:R:T185 31.64575.19YesYes144
58R:R:N100 R:R:W105 12.75747.91NoYes048
59R:R:M116 R:R:T185 28.50643.01NoYes054
60R:R:C186 R:R:M116 25.60098.1NoNo095
61R:R:C112 R:R:C186 12.81287.28YesNo599
62R:R:Q123 R:R:W261 26.82598.76YesYes078
63R:R:F124 R:R:M170 11.22467.46YesNo064
64R:R:V127 R:R:W261 24.1394.9NoYes088
65R:R:F257 R:R:V127 20.64575.24YesNo098
66R:R:N300 R:R:Y304 40.05428.14YesYes199
67R:R:Y221 R:R:Y304 14.117810.92YesYes199
68R:R:F201 R:R:G198 20.93811.51YesNo054
69R:R:G198 R:R:S189 19.22693.71NoNo041
70R:R:N187 R:R:S189 15.78594.47NoNo051
71R:R:N187 R:R:Q181 14.05629.24NoNo051
72R:R:D179 R:R:Q181 12.32036.53NoNo041
73R:R:D179 R:R:P191 10.57838.05NoNo044
74R:R:F210 R:R:L262 12.96057.31NoNo085
75R:R:F257 R:R:L214 13.47143.65YesNo097
76R:R:C218 R:R:L214 10.22136.35NoNo047
77R:R:L222 R:R:V225 10.82761.49NoYes035
78R:R:V253 R:R:Y304 24.26521.26NoYes089
79R:R:L303 R:R:V253 21.86765.96YesNo088
80R:R:L303 R:R:L307 14.63171.38YesNo086
81R:R:L307 R:R:M249 12.20345.65NoNo068
82L:L:?2 R:R:N268 56.3518.72YesYes105
83L:L:?5 R:R:Y286 58.711613.84YesNo104
84R:R:N81 R:R:W164 11.46787.91NoNo099
85R:R:L82 R:R:N300 10.65836.87NoYes199
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:I202 4.62 1 Yes Yes 0 5 0 1
L:L:?1 R:R:N268 7.77 1 Yes Yes 0 5 0 1
L:L:?1 R:R:N271 6.66 1 Yes No 0 4 0 1
L:L:?2 R:R:Q123 8.45 1 Yes Yes 0 7 0 1
L:L:?2 R:R:F124 3.87 1 Yes Yes 0 6 0 1
L:L:?2 R:R:F201 3.87 1 Yes Yes 0 5 0 1
L:L:?2 R:R:F264 4.83 1 Yes Yes 0 7 0 1
L:L:?2 R:R:N268 8.72 1 Yes Yes 0 5 0 1
L:L:K3 R:R:Y89 5.97 1 Yes Yes 0 6 0 1
L:L:K3 R:R:D119 13.83 1 Yes No 0 6 0 1
L:L:K3 R:R:F264 8.69 1 Yes Yes 0 7 0 1
L:L:Y4 R:R:Q99 10.15 1 No No 0 4 0 1
L:L:Y4 R:R:T185 16.23 1 No Yes 0 4 0 1
L:L:?5 R:R:L276 5.45 1 Yes Yes 0 1 0 1
L:L:?5 R:R:S282 5.91 1 Yes No 0 5 0 1
L:L:?5 R:R:Y286 13.84 1 Yes No 0 4 0 1
L:L:?6 R:R:N271 8.79 1 No No 0 4 0 1
R:R:D119 R:R:Y89 8.05 1 No Yes 6 6 1 1
R:R:N122 R:R:Y89 5.81 0 Yes Yes 8 6 2 1
R:R:Q123 R:R:Y89 6.76 1 Yes Yes 7 6 1 1
R:R:S297 R:R:Y89 6.36 1 No Yes 9 6 2 1
R:R:F104 R:R:Q99 9.37 1 Yes No 4 4 2 1
R:R:Q99 R:R:T185 4.25 1 No Yes 4 4 1 1
R:R:F104 R:R:T185 5.19 1 Yes Yes 4 4 2 1
R:R:D119 R:R:G120 5.03 1 No No 6 5 1 2
R:R:F124 R:R:Q123 8.2 1 Yes Yes 6 7 1 1
R:R:Q123 R:R:W261 8.76 1 Yes Yes 7 8 1 2
R:R:F265 R:R:Q123 5.86 0 No Yes 7 7 2 1
R:R:F124 R:R:M170 7.46 1 Yes No 6 4 1 2
R:R:F124 R:R:T205 3.89 1 Yes No 6 4 1 2
R:R:F201 R:R:L174 7.31 0 Yes No 5 3 1 2
R:R:A199 R:R:L272 4.73 0 No No 3 4 2 1
R:R:F201 R:R:I202 3.77 0 Yes Yes 5 5 1 1
R:R:F201 R:R:T205 7.78 0 Yes No 5 4 1 2
R:R:I202 R:R:N268 4.25 1 Yes Yes 5 5 1 1
R:R:S293 R:R:W261 3.71 0 No Yes 7 8 2 2
R:R:F264 R:R:F265 5.36 1 Yes No 7 7 1 2
R:R:F264 R:R:S293 3.96 1 Yes No 7 7 1 2
R:R:N268 R:R:V267 4.43 1 Yes No 5 5 1 2
R:R:V267 R:R:Y286 11.36 1 No No 5 4 2 1
R:R:N268 R:R:Y286 4.65 1 Yes No 5 4 1 1
R:R:L276 R:R:N271 6.87 1 Yes No 1 4 1 1
R:R:L276 R:R:S282 7.51 1 Yes No 1 5 1 1
R:R:A283 R:R:F287 4.16 0 No No 4 3 1 2
R:R:M116 R:R:T185 3.01 0 No Yes 5 4 2 1
R:R:F264 R:R:V289 2.62 1 Yes No 7 7 1 2
L:L:?5 R:R:A283 2.48 1 Yes No 0 4 0 1
L:L:?1 R:R:L272 2.24 1 Yes No 0 4 0 1
L:L:?5 R:R:Q278 2.09 1 Yes No 0 1 0 1
R:R:L276 R:R:P277 1.64 1 Yes No 1 3 1 2
R:R:F201 R:R:G198 1.51 0 Yes No 5 4 1 2
R:R:I202 R:R:I269 1.47 1 Yes No 5 6 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8ZCJ_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.17
Number of Linked Nodes 255
Number of Links 287
Number of Hubs 38
Number of Links mediated by Hubs 140
Number of Communities 7
Number of Nodes involved in Communities 48
Number of Links involved in Communities 65
Path Summary
Number Of Nodes in MetaPath 86
Number Of Links MetaPath 85
Number of Shortest Paths 75605
Length Of Smallest Path 3
Average Path Length 14.69
Length of Longest Path 29
Minimum Path Strength 1.24
Average Path Strength 7.5478
Maximum Path Strength 28.95
Minimum Path Correlation 0.7
Average Path Correlation 0.929277
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.84615
Average % Of Corr. Nodes 44.6623
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 47.3508
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Ras-like P-loop GTPases
SCOP2Family Identifier• Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
Code004
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
Code004
Name(2S)-amino(phenyl)ethanoic acid
SynonymsL-Phenylglycine
Identifier
FormulaC8 H9 N O2
Molecular Weight151.163
SMILES
PubChem99291
Formal Charge0
Total Atoms20
Total Chiral Atoms1
Total Bonds20
Total Aromatic Bonds6

CodeDTR
PDB ResiduesL:L:?2
Environment DetailsOpen EMBL-EBI Page
CodeDTR
NameD-Tryptophan
Synonyms
  • (R)-tryptophan
  • DTR
  • D-Tryptophan
  • (2R)-2-amino-3-(1H-indol-3-yl)propanoic acid
Identifier
FormulaC11 H12 N2 O2
Molecular Weight204.225
SMILES
PubChem9060
Formal Charge0
Total Atoms27
Total Chiral Atoms1
Total Bonds28
Total Aromatic Bonds10

CodePHA
PDB ResiduesL:L:?5
Environment DetailsOpen EMBL-EBI Page
CodePHA
NamePHENYLALANINAL
Synonyms
Identifier
FormulaC9 H11 N O
Molecular Weight149.19
SMILES
PubChem446207
Formal Charge0
Total Atoms22
Total Chiral Atoms1
Total Bonds22
Total Aromatic Bonds6

CodeHYP
PDB ResiduesL:L:?6
Environment DetailsOpen EMBL-EBI Page
CodeHYP
NameHydroxyproline
SynonymsHYDROXYPROLINE
Identifier
FormulaC5 H9 N O3
Molecular Weight131.13
SMILES
PubChem6971053
Formal Charge0
Total Atoms18
Total Chiral Atoms2
Total Bonds18
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP35346
Sequence
>8ZCJ_nogp_Chain_R
VPVLYLLVC AAGLGGNTL VIYVVLRFA KMKTVTNIY ILNLAVADV 
LYMLGLPFL ATQNAASFW PFGPVLCRL VMTLDGVNQ FTSVFCLTV 
MSVDRYLAV VHPLSSARW RRPRVAKLA SAAAWVLSL CMSLPLLVF 
ADVQEGGTC NASWPEPVG LWGAVFIIY TAVLGFFAP LLVICLCYL 
LIVVKVRAA GVRVGCVRR RSERKVTRM VLVVVLVFA GCWLPFFTV 
NIVNLAVAL PQEPASAGL YFFVVILSY ANSCANPVL YGFLSDNFR 
QSFQK


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8X8LAPeptideSomatostatinSST5Homo sapiensCortistatin-14-chim(NtGi1-Gs-CtGi1)/β1/γ22.72024-06-12doi.org/10.1073/pnas.2321710121
8X8L (No Gprot) APeptideSomatostatinSST5Homo sapiensCortistatin-14-2.72024-06-12doi.org/10.1073/pnas.2321710121
8X8NAPeptideSomatostatinSST5Homo sapiensOctreotide-chim(NtGi1-Gs-CtGi1)/β1/γ22.92024-06-12doi.org/10.1073/pnas.2321710121
8X8N (No Gprot) APeptideSomatostatinSST5Homo sapiensOctreotide-2.92024-06-12doi.org/10.1073/pnas.2321710121
8ZBEAPeptideSomatostatinSST5Homo sapiensOctreotide-Gi1/β1/γ13.242024-07-10doi.org/10.1038/s41401-024-01314-8
8ZBE (No Gprot) APeptideSomatostatinSST5Homo sapiensOctreotide-3.242024-07-10doi.org/10.1038/s41401-024-01314-8
8ZCJAPeptideSomatostatinSST5Homo sapiensPasireotide-Gi1/β1/γ13.092024-07-10doi.org/10.1038/s41401-024-01314-8
8ZCJ (No Gprot) APeptideSomatostatinSST5Homo sapiensPasireotide-3.092024-07-10doi.org/10.1038/s41401-024-01314-8
8ZBJAPeptideSomatostatinSST5Homo sapiensSomatostatin-14-Gi1/β1/γ22.942025-04-30To be published
8ZBJ (No Gprot) APeptideSomatostatinSST5Homo sapiensSomatostatin-14-2.942025-04-30To be published
9W32APeptideSomatostatinSST5Homo sapiensSSTR5 antagonist 1--2.592026-01-2110.1073/pnas.2522515122
9W33APeptideSomatostatinSST5Homo sapiensS5A1--2.692026-01-2110.1073/pnas.2522515122




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8ZCJ_nogp.zip



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