Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 8.826431410
2R:R:Y29 8.438508
3R:R:I37 7.055407
4R:R:I46 5.57507
5R:R:F47 9.648527
6R:R:I58 4.26406
7R:R:Y59 9.32333627
8R:R:L60 7.7975428
9R:R:D67 5.808539
10R:R:M70 6.495407
11R:R:F74 5.024508
12R:R:F101 7.2125417
13R:R:Y102 11.15415
14R:R:F112 9.5775409
15R:R:F117 12.93406
16R:R:R119 7.294529
17R:R:Y120 8.54408
18R:R:Q133 13.23427
19R:R:W146 6.8825429
20R:R:Y189 4.8425404
21R:R:F191 10.29405
22R:R:F195 13.836519
23R:R:W196 5.765404
24R:R:F205 9.615408
25R:R:Y206 6.24667629
26R:R:H217 3.7875404
27R:R:S224 2.61404
28R:R:F242 6.9675419
29R:R:F246 8.23667619
30R:R:Y249 10.538517
31R:R:H250 15.6175418
32R:R:R253 10.916516
33R:R:Y256 10.795415
34R:R:Y265 7.61461
35R:R:R274 8.835413
36R:R:Y275 8.044512
37R:R:K277 9.3415
38R:R:N287 8.3025409
39R:R:V288 5.4438
40R:R:I294 3.345458
41R:R:F296 7.24286727
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:Y256 24.30454.74YesYes105
2R:R:R274 R:R:Y256 28.40387.2YesYes135
3R:R:R274 R:R:Y275 17.12937.2YesYes132
4L:L:?1 R:R:Y102 50.194624.28YesYes105
5R:R:F101 R:R:Y102 34.20975.16YesYes175
6R:R:F101 R:R:F74 28.51346.43YesYes078
7R:R:A285 R:R:F74 38.3094.16NoYes078
8R:R:A285 R:R:Y29 36.86475.34NoYes078
9R:R:I25 R:R:Y29 17.67712.42NoYes068
10R:R:I25 R:R:P26 11.04963.39NoNo065
11R:R:K77 R:R:Y29 12.842721.5NoYes078
12R:R:F33 R:R:F74 19.26555.36NoYes078
13R:R:F33 R:R:I37 16.111711.3NoYes077
14R:R:F101 R:R:M70 17.27649.95YesYes077
15R:R:M70 R:R:V288 28.75266.09YesYes078
16R:R:N40 R:R:V288 23.6794.43NoYes398
17R:R:N40 R:R:P292 23.24374.89NoNo099
18R:R:F74 R:R:V288 51.75995.24YesYes088
19R:R:D67 R:R:V288 53.03125.84YesYes398
20R:R:F296 R:R:P292 22.21175.78YesNo079
21R:R:D67 R:R:I63 36.79844.2YesNo099
22R:R:F296 R:R:I63 30.83695.02YesNo079
23R:R:F296 R:R:F302 14.7776.43YesNo279
24R:R:F302 R:R:I46 15.607310.05NoYes097
25R:R:F296 R:R:L60 30.21138.53YesYes278
26R:R:Y102 R:R:Y249 28.16746.95YesYes157
27R:R:H250 R:R:Y249 69.739713.07YesYes187
28R:R:F195 R:R:H250 49.338435.07YesYes198
29R:R:F195 R:R:F242 42.22955.36YesYes199
30R:R:F112 R:R:F242 82.65165.36YesYes099
31R:R:F112 R:R:Y295 10013.41YesNo099
32R:R:R119 R:R:Y295 99.048.23YesNo099
33R:R:I115 R:R:R119 62.08317.52NoYes299
34R:R:I115 R:R:Y59 81.29964.84NoYes297
35L:L:?1 R:R:R253 27.66589.21YesYes106
36R:R:R253 R:R:Y249 47.242613.38YesYes167
37L:L:?1 R:R:F191 24.78024.92YesYes005
38R:R:F191 R:R:Y106 29.654923.73YesNo058
39R:R:H250 R:R:Y106 30.13069.8YesNo088
40R:R:F246 R:R:H250 50.18314.53YesYes198
41R:R:F242 R:R:F246 40.94099.65YesYes199
42R:R:F56 R:R:L60 25.521112.18NoYes288
43R:R:F111 R:R:Y59 18.54775.16NoYes287
44R:R:F111 R:R:W146 10.31745.01NoYes289
45R:R:D291 R:R:D67 18.01727.98NoYes099
46R:R:M70 R:R:N104 22.63835.61YesNo078
47R:R:N104 R:R:V69 19.47310.35NoNo087
48R:R:L100 R:R:V69 17.88184.47NoNo057
49R:R:L100 R:R:T73 16.28474.42NoNo057
50R:R:S97 R:R:T73 14.68193.2NoNo057
51R:R:D81 R:R:K77 11.257212.44NoNo057
52R:R:R119 R:R:Y206 39.718.23YesYes299
53R:R:Q133 R:R:Y59 43.05418.04YesYes277
54R:R:F117 R:R:Q133 38.107216.4YesYes067
55R:R:F117 R:R:F205 19.568210.72YesYes068
56R:R:F205 R:R:Y120 11.819316.5YesYes088
57R:R:F117 R:R:W128 15.97627.02YesNo064
58R:R:W128 R:R:Y121 10.32613.5NoNo446
59L:L:?1 R:R:N156 26.896113.18YesNo005
60R:R:N156 R:R:S187 24.70245.96NoNo054
61R:R:S187 R:R:W183 22.25786.18NoNo042
62R:R:P155 R:R:W183 19.807412.16NoNo072
63R:R:L159 R:R:P155 12.42183.28NoNo057
64L:L:?1 R:R:Q260 14.18328.74YesNo103
65R:R:I173 R:R:Q260 12.33535.49NoNo043
66R:R:T257 R:R:Y189 26.79243.75NoYes054
67R:R:R253 R:R:T257 23.20627.76YesNo165
68R:R:I109 R:R:V198 11.96063.07NoNo189
69R:R:I235 R:R:Y206 32.70786.04NoYes089
70R:R:I235 R:R:T210 31.09056.08NoNo085
71R:R:F236 R:R:T210 29.47913.89NoNo055
72R:R:F236 R:R:S232 27.89933.96NoNo056
73R:R:S231 R:R:S232 25.09441.63NoNo086
74R:R:I213 R:R:S231 23.89234.64NoNo088
75R:R:I213 R:R:S216 22.22321.55NoNo085
76R:R:H217 R:R:S216 18.86194.18YesNo045
77R:R:H217 R:R:S224 12.10475.58YesYes044
78R:R:K258 R:R:Y189 13.4743.58NoYes034
79R:R:C299 R:R:L60 10.81033.17NoYes088
80R:R:F112 R:R:I63 22.97278.79YesNo099
81R:R:F56 R:R:I115 21.00677.54NoNo289
82R:R:D291 R:R:F112 15.878210.75NoYes099
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:C94 8.02 1 Yes No 0 9 0 1
L:L:?1 R:R:V99 5.27 1 Yes No 0 6 0 1
L:L:?1 R:R:Y102 24.28 1 Yes Yes 0 5 0 1
L:L:?1 R:R:N156 13.18 1 Yes No 0 5 0 1
L:L:?1 R:R:K176 5.7 1 Yes No 0 4 0 1
L:L:?1 R:R:H184 14.94 1 Yes No 0 3 0 1
L:L:?1 R:R:N188 6.24 1 Yes No 0 4 0 1
L:L:?1 R:R:F191 4.92 1 Yes Yes 0 5 0 1
L:L:?1 R:R:R253 9.21 1 Yes Yes 0 6 0 1
L:L:?1 R:R:Y256 4.74 1 Yes Yes 0 5 0 1
L:L:?1 R:R:Q260 8.74 1 Yes No 0 3 0 1
L:L:?1 R:R:K277 7.12 1 Yes Yes 0 5 0 1
L:L:?1 R:R:E278 8.03 1 Yes No 0 5 0 1
R:R:C172 R:R:C94 7.28 0 No No 9 9 2 1
R:R:I157 R:R:V99 7.68 0 No No 5 6 2 1
R:R:F101 R:R:Y102 5.16 1 Yes Yes 7 5 2 1
R:R:F101 R:R:L281 7.31 1 Yes No 7 6 2 2
R:R:Y102 R:R:Y249 6.95 1 Yes Yes 5 7 1 2
R:R:L281 R:R:Y102 8.21 1 No Yes 6 5 2 1
R:R:F191 R:R:Y106 23.73 0 Yes No 5 8 1 2
R:R:F191 R:R:L152 9.74 0 Yes No 5 5 1 2
R:R:N156 R:R:S187 5.96 0 No No 5 4 1 2
R:R:K176 R:R:T160 6.01 1 No No 4 5 1 2
R:R:I173 R:R:Q260 5.49 0 No No 4 3 2 1
R:R:H184 R:R:K176 5.24 1 No No 3 4 1 1
R:R:N188 R:R:R253 19.28 1 No Yes 4 6 1 1
R:R:N188 R:R:T257 13.16 1 No No 4 5 1 2
R:R:R253 R:R:Y249 13.38 1 Yes Yes 6 7 1 2
R:R:L281 R:R:Y249 10.55 1 No Yes 6 7 2 2
R:R:R253 R:R:T257 7.76 1 Yes No 6 5 1 2
R:R:K277 R:R:R253 4.95 1 Yes Yes 5 6 1 1
R:R:Q260 R:R:Y256 16.91 1 No Yes 3 5 1 1
R:R:R274 R:R:Y256 7.2 1 Yes Yes 3 5 2 1
R:R:K277 R:R:Y256 14.33 1 Yes Yes 5 5 1 1
R:R:E278 R:R:K277 10.8 1 No Yes 5 5 1 1
L:L:?1 R:R:A98 3.18 1 Yes No 0 6 0 1
R:R:A153 R:R:F191 2.77 0 No Yes 7 5 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9J0B_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 4.14
Number of Linked Nodes 280
Number of Links 313
Number of Hubs 41
Number of Links mediated by Hubs 157
Number of Communities 6
Number of Nodes involved in Communities 55
Number of Links involved in Communities 76
Path Summary
Number Of Nodes in MetaPath 83
Number Of Links MetaPath 82
Number of Shortest Paths 86709
Length Of Smallest Path 3
Average Path Length 13.7185
Length of Longest Path 30
Minimum Path Strength 1.22
Average Path Strength 8.12004
Maximum Path Strength 24.07
Minimum Path Correlation 0.7
Average Path Correlation 0.921728
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.54545
Average % Of Corr. Nodes 46.511
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 51.1827
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeUPG
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeUPG
NameUridine diphosphate glucose
SynonymsUridine diphosphate glucose
Identifier
FormulaC15 H24 N2 O17 P2
Molecular Weight566.302
SMILES
PubChem8629
Formal Charge0
Total Atoms60
Total Chiral Atoms9
Total Bonds62
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ15391
Sequence
>9J0B_nogp_Chain_R
QNLLITQQI IPVLYCMVF IAGILLNGV SGWIFFYVP SSKSFIIYL 
KNIVIADFV MSLTFPFKI LGDSGLGPW QLNVFVCRV SAVLFYVNM 
YVSIVFFGL ISFDRYYKI VKPLWTSFI QSVSYSKLL SVIVWMLML 
LLAVPNIIL TNQSVREVT QIKCIELKS ELGRKWHKA SNYIFVAIF 
WIVFLLLIV FYTAITKKI FKSHLKSSR NSTSVKKKS SRNIFSIVF 
VFFVCFVPY HIARIPYTK SQTEAHYSC QSKEILRYM KEFTLLLSA 
ANVCLDPII YFFLCQPFR EILCKKL


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
9J0FANucleotideP2YP2Y14Homo sapiensNADH-Gi1/β1/γ22.762025-06-04doi.org/10.1038/s41421-025-00799-9
9J0F (No Gprot) ANucleotideP2YP2Y14Homo sapiensNADH-2.762025-06-04doi.org/10.1038/s41421-025-00799-9
9J0IANucleotideP2YP2Y14Homo sapiensUDP-Glucuronic acid-Gi1/β1/γ22.762025-06-04doi.org/10.1038/s41421-025-00799-9
9J0I (No Gprot) ANucleotideP2YP2Y14Homo sapiensUDP-Glucuronic acid-2.762025-06-04doi.org/10.1038/s41421-025-00799-9
9J0BANucleotideP2YP2Y14Homo sapiensUDP-Glucose-Gi1/β1/γ22.882025-06-0410.1038/s41421-025-00799-9
9J0B (No Gprot) ANucleotideP2YP2Y14Homo sapiensUDP-Glucose-2.882025-06-0410.1038/s41421-025-00799-9
9J05ANucleotideP2YP2Y14Homo sapiens---3.22025-08-06To be published
9YDUANucleotideP2YP2Y14Homo sapiensUDP-Glucose-Gi1/β1/γ23.192025-11-1910.1038/s42003-025-09174-6
9YDU (No Gprot) ANucleotideP2YP2Y14Homo sapiensUDP-Glucose-3.192025-11-1910.1038/s42003-025-09174-6
9YDVANucleotideP2YP2Y14Homo sapiensMRS2905-Gi1/β1/γ23.052025-11-1910.1038/s42003-025-09174-6
9YDV (No Gprot) ANucleotideP2YP2Y14Homo sapiensMRS2905-3.052025-11-1910.1038/s42003-025-09174-6




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9J0B_nogp.zip



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