Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:P36 2.95503
2R:R:F44 5.746527
3R:R:F48 4.9425406
4R:R:I70 6.7525436
5R:R:N71 5.0625437
6R:R:W74 8.21537
7R:R:N77 7.29754139
8R:R:D82 6.2675429
9R:R:L89 7.025427
10R:R:I96 4.1675425
11R:R:H101 5.7654154
12R:R:W102 5.685717148
13R:R:N119 4.972529
14R:R:L126 4.3354137
15R:R:R134 5.24333639
16R:R:L137 5.44638
17R:R:F139 10.1175407
18R:R:F147 12.6175484
19R:R:R148 10.096537
20R:R:W161 3.444509
21R:R:Y174 7.535404
22R:R:F211 5.5075408
23R:R:Y222 4.828508
24R:R:V247 4.53754107
25R:R:S250 3.48754106
26R:R:F254 10.544508
27R:R:W255 9.944509
28R:R:F275 3.9125403
29R:R:S287 6.3975404
30R:R:Y290 8.10333627
31R:R:I299 4.1954107
32R:R:Y300 8.595499
33R:R:L323 8.656595
34R:R:S327 6.2875434
35S:S:P36 3.3275403
36S:S:L41 6.584165
37S:S:F44 5.4475457
38S:S:F48 6.875406
39S:S:V58 3.7054128
40S:S:I70 6.6575406
41S:S:N71 4.78547
42S:S:I73 6.0275406
43S:S:W74 7.59667607
44S:S:N77 7.29754179
45S:S:D82 6.605459
46S:S:L89 8.255457
47S:S:H101 6.12754184
48S:S:W102 8.00667668
49S:S:F104 9.2407
50S:S:C109 4.152569
51S:S:S114 3.69465
52S:S:R134 5.596549
53S:S:L137 6.642548
54S:S:F147 8.2275484
55S:S:R148 8.37286747
56S:S:W161 3.9525409
57S:S:L163 4.4825414
58S:S:L173 2.765404
59S:S:R175 6.138565
60S:S:Y192 8.44405
61S:S:R198 12.4845113
62S:S:W213 8.068515
63S:S:Y222 4.81408
64S:S:L241 3.305406
65S:S:F251 8.4579
66S:S:F254 10.735478
67S:S:W255 8.08333679
68S:S:Q259 6.5675408
69S:S:S272 2.90254214
70S:S:F275 3.45754213
71S:S:L278 3.595404
72S:S:Y290 6.28625857
73S:S:Y300 8.85254129
74S:S:L323 9.714125
75S:S:S327 6.2875444
76W:W:?1 7.043081310
77K:K:?1 8.233331210
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:F44 R:R:Y290 14.35937.22YesYes277
2R:R:C293 R:R:Y290 38.31554.03NoYes287
3R:R:C293 R:R:D82 38.7486.22NoYes289
4R:R:D82 R:R:N296 43.90896.73YesNo099
5R:R:N296 R:R:V247 52.86478.87NoYes097
6R:R:L127 R:R:V247 20.07152.98NoYes087
7R:R:R134 R:R:T238 11.70223.88YesNo095
8R:R:E325 R:R:T238 11.17479.88NoNo085
9R:R:E325 R:R:K239 37.96054.05NoNo087
10R:R:E321 R:R:K239 28.51372.7NoNo067
11R:R:E321 R:R:K313 26.62082.7NoNo064
12R:R:E317 R:R:K313 24.72685.4NoNo034
13R:R:E317 R:R:S314 22.83175.75NoNo034
14R:R:P316 R:R:S314 20.93545.34NoNo054
15R:R:L315 R:R:P316 19.03793.28NoNo065
16R:R:L315 R:R:L57 11.43642.77NoNo065
17R:R:R134 R:R:T240 11.69417.76YesNo397
18R:R:E325 R:R:T240 28.67239.88NoNo087
19R:R:I70 R:R:W74 11.51758.22YesYes367
20R:R:I70 R:R:R148 10.611313.78YesYes367
21R:R:D133 R:R:W74 37.262211.17NoYes387
22R:R:D133 R:R:R148 10.494316.68NoYes387
23R:R:N71 R:R:R148 19.28984.82YesYes377
24R:R:L137 R:R:R134 24.16876.07YesYes389
25R:R:L127 R:R:L78 13.87354.15NoNo089
26R:R:L126 R:R:L78 13.31714.15YesNo079
27R:R:L126 R:R:N77 11.60326.87YesYes1379
28R:R:S250 R:R:V247 56.8273.23YesYes1067
29R:R:N292 R:R:S250 56.46632.98NoYes096
30R:R:N292 R:R:W255 57.35517.91NoYes099
31R:R:F251 R:R:W255 60.307610.02NoYes099
32R:R:F251 R:R:I124 79.500615.07NoNo098
33R:R:I124 R:R:P214 79.89035.08NoNo089
34R:R:P214 W:W:?1 80.06175.43NoYes190
35R:R:T129 W:W:?1 56.22665.85NoYes060
36R:R:L92 R:R:W102 14.60542.28NoYes068
37R:R:L92 R:R:Y290 15.17463.52NoYes067
38R:R:V159 W:W:?1 66.20099.86NoYes010
39K:K:?1 R:R:V159 66.186510.84YesNo001
40K:K:?1 S:S:L163 66.57854.58YesYes104
41S:S:L163 W:W:?1 69.12563.66YesYes140
42R:R:L209 W:W:?1 17.52433.66NoYes140
43R:R:L209 R:R:V205 16.98872.98NoNo043
44R:R:V205 S:S:L173 15.27832.98NoYes034
45S:S:L173 S:S:Y174 12.98243.52YesNo044
46R:R:F251 R:R:F252 22.80748.57NoNo095
47R:R:F211 R:R:F252 20.02516.43YesNo085
48R:R:L256 R:R:V260 12.16372.98NoNo056
49R:R:M264 R:R:V260 11.41214.56NoNo046
50R:R:L278 R:R:M264 10.65935.65NoNo044
51K:K:?1 S:S:P214 99.53397.61YesNo109
52S:S:I124 S:S:P214 1006.77NoNo089
53S:S:F251 S:S:I124 99.615515.07YesNo098
54S:S:F251 S:S:W255 75.677911.02YesYes799
55S:S:I116 S:S:W255 41.62814.7NoYes069
56S:S:I116 S:S:Y290 41.133613.3NoYes067
57S:S:F44 S:S:Y290 14.51575.16YesYes577
58S:S:F44 S:S:I96 12.13412.51YesNo075
59S:S:C293 S:S:Y290 24.38294.03NoYes587
60S:S:C293 S:S:D82 23.29846.22NoYes589
61K:K:?1 S:S:T129 47.77626.83YesNo106
62S:S:T129 S:S:W74 47.49713.64NoYes067
63S:S:I130 S:S:W74 29.038315.27NoYes087
64S:S:I130 S:S:V244 28.51314.61NoNo087
65S:S:V244 S:S:Y222 28.01173.79NoYes078
66S:S:V248 S:S:Y222 20.25733.79NoYes078
67S:S:L127 S:S:V248 19.88562.98NoNo087
68S:S:L127 S:S:V247 19.16872.98NoNo087
69S:S:N296 S:S:V247 18.81328.87NoNo097
70S:S:N296 S:S:Y300 33.67579.3NoYes099
71S:S:L323 S:S:Y300 24.224214.07YesYes1259
72S:S:L323 S:S:V322 23.25964.47YesNo055
73S:S:G304 S:S:V322 21.18031.84NoNo085
74S:S:G304 S:S:L318 20.13225.13NoNo083
75S:S:L318 S:S:Q305 19.0833.99NoNo036
76S:S:Q305 S:S:V301 18.03272.87NoNo066
77S:S:L315 S:S:V301 16.98122.98NoNo066
78S:S:L315 S:S:L57 10.64782.77NoNo065
79S:S:D82 S:S:N296 20.58335.39YesNo099
80S:S:W255 S:S:Y258 30.45585.79YesNo097
81S:S:R206 S:S:Y258 34.23045.14NoNo067
82S:S:L117 S:S:R206 33.33417.29NoNo046
83S:S:L117 S:S:S171 32.78174.5NoNo045
84S:S:R175 S:S:S171 29.29833.95YesNo655
85S:S:C109 S:S:R175 15.34254.18YesYes695
86S:S:C109 S:S:W102 12.4413.92YesYes698
87S:S:P113 S:S:R175 12.982412.97NoYes065
88S:S:P113 S:S:W102 12.40514.05NoYes068
89S:S:F104 S:S:W102 16.625716.04YesYes078
90S:S:F104 S:S:P103 11.887510.11YesNo073
91S:S:F251 S:S:F252 20.57989.65YesNo095
92S:S:F211 S:S:F252 18.04087.5NoNo085
93S:S:F211 S:S:L256 15.9874.87NoNo085
94S:S:L256 S:S:V260 14.83412.98NoNo056
95S:S:M264 S:S:V260 14.13934.56NoNo046
96S:S:L278 S:S:M264 13.44334.24YesNo044
97S:S:C144 S:S:L136 10.24821.59NoNo055
98R:R:N71 R:R:T240 18.33035.85YesNo377
99R:R:D133 R:R:L137 26.31165.43NoYes388
100R:R:T129 R:R:W74 55.82594.85NoYes067
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:V159 W:W:?1 9.86 0 No Yes 1 0 1 2
K:K:?1 R:R:V159 10.84 1 Yes No 0 1 0 1
S:S:T129 S:S:W74 3.64 1 No Yes 6 7 1 2
S:S:I124 S:S:P214 6.77 0 No No 8 9 2 1
S:S:A160 S:S:L125 3.15 0 No No 6 6 2 1
S:S:L125 S:S:L163 5.54 1 No Yes 6 4 1 1
K:K:?1 S:S:L125 7.33 1 Yes No 0 6 0 1
K:K:?1 S:S:A128 9.38 1 Yes No 0 7 0 1
S:S:L156 S:S:T129 4.42 1 No No 5 6 1 1
K:K:?1 S:S:T129 6.83 1 Yes No 0 6 0 1
S:S:L152 S:S:L156 5.54 0 No No 3 5 2 1
K:K:?1 S:S:L156 5.5 1 Yes No 0 5 0 1
K:K:?1 S:S:V159 9.86 1 Yes No 0 1 0 1
S:S:L163 S:S:L167 4.15 1 Yes No 4 4 1 2
S:S:L163 W:W:?1 3.66 1 Yes Yes 4 0 1 2
K:K:?1 S:S:L163 4.58 1 Yes Yes 0 4 0 1
S:S:L209 S:S:V205 2.98 0 No No 4 3 1 2
K:K:?1 S:S:L209 8.24 1 Yes No 0 4 0 1
S:S:P214 S:S:W213 4.05 1 No Yes 9 5 1 1
S:S:T217 S:S:W213 10.92 1 No Yes 5 5 1 1
K:K:?1 S:S:W213 21.86 1 Yes Yes 0 5 0 1
K:K:?1 S:S:P214 7.61 1 Yes No 0 9 0 1
K:K:?1 S:S:T217 4.88 1 Yes No 0 5 0 1
S:S:L216 S:S:W213 2.28 0 No Yes 2 5 2 1
K:K:?1 R:R:I155 1.89 1 Yes No 0 2 0 1
S:S:I155 S:S:V159 1.54 0 No No 2 1 2 1
S:S:V208 S:S:W213 1.23 0 No Yes 4 5 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:T129 R:R:W74 4.85 0 No Yes 6 7 1 2
R:R:I124 R:R:P214 5.08 0 No No 8 9 2 1
R:R:L125 R:R:L163 5.54 1 No No 6 4 1 1
R:R:L125 W:W:?1 8.24 1 No Yes 6 0 1 0
R:R:A128 W:W:?1 9.38 0 No Yes 7 0 1 0
R:R:T129 W:W:?1 5.85 0 No Yes 6 0 1 0
R:R:L152 R:R:L156 4.15 0 No No 3 5 2 1
R:R:L156 W:W:?1 3.66 0 No Yes 5 0 1 0
R:R:V159 W:W:?1 9.86 0 No Yes 1 0 1 0
K:K:?1 R:R:V159 10.84 1 Yes No 0 1 2 1
R:R:L163 S:S:L166 4.15 1 No No 4 4 1 1
R:R:L163 W:W:?1 3.66 1 No Yes 4 0 1 0
R:R:L209 R:R:V205 2.98 1 No No 4 3 1 2
R:R:L209 S:S:L166 4.15 1 No No 4 4 1 1
R:R:L209 W:W:?1 3.66 1 No Yes 4 0 1 0
R:R:P214 R:R:W213 4.05 1 No No 9 5 1 1
R:R:T217 R:R:W213 10.92 1 No No 5 5 1 1
R:R:W213 W:W:?1 19.59 1 No Yes 5 0 1 0
R:R:P214 W:W:?1 5.43 1 No Yes 9 0 1 0
R:R:T217 W:W:?1 4.88 1 No Yes 5 0 1 0
S:S:L125 S:S:L163 5.54 1 No Yes 6 4 2 1
K:K:?1 S:S:L125 7.33 1 Yes No 0 6 2 2
S:S:G162 W:W:?1 4.53 0 No Yes 4 0 1 0
S:S:L163 S:S:L167 4.15 1 Yes No 4 4 1 2
S:S:L163 W:W:?1 3.66 1 Yes Yes 4 0 1 0
K:K:?1 S:S:L163 4.58 1 Yes Yes 0 4 2 1
S:S:L166 W:W:?1 9.16 1 No Yes 4 0 1 0

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 5O9H_poly
Class A
SubFamily Peptide
Type Complement peptide
SubType C5a1
Species Homo sapiens
Ligand -
Other Ligand(s) NDT9513727
Protein Partners -
PDB Resolution 2.7
Date 2018-01-10
D.O.I. 10.1038/nature25025
Net Summary
Imin 2.98
Number of Linked Nodes 558
Number of Links 632
Number of Hubs 77
Number of Links mediated by Hubs 311
Number of Communities 21
Number of Nodes involved in Communities 112
Number of Links involved in Communities 145
Path Summary
Number Of Nodes in MetaPath 101
Number Of Links MetaPath 100
Number of Shortest Paths 359508
Length Of Smallest Path 3
Average Path Length 20.8723
Length of Longest Path 47
Minimum Path Strength 1.385
Average Path Strength 6.57599
Maximum Path Strength 20.03
Minimum Path Correlation 0.7
Average Path Correlation 0.963021
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 3.7037
Average % Of Corr. Nodes 47.3004
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 38.3306
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier
SCOP2Family Identifier
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
Code9P2
PDB ResiduesW:W:?1 K:K:?1
Environment DetailsOpen EMBL-EBI Page
Code9P2
Name1-(1,3-benzodioxol-5-yl)-~{N}-(1,3-benzodioxol-5-ylmethyl)-~{N}-[(3-butyl-2,5-diphenyl-imidazol-4-yl)methyl]methanamine
Synonyms
Identifier1-(1,3-benzodioxol-5-yl)-~{N}-(1,3-benzodioxol-5-ylmethyl)-~{N}-[(3-butyl-2,5-diphenyl-imidazol-4-yl)methyl]methanamine
FormulaC36 H35 N3 O4
Molecular Weight573.681
SMILESCCCCn1c(c(nc1c2ccccc2)c3ccccc3)CN(Cc4ccc5c(c4)OCO5)Cc6ccc7c(c6)OCO7
PubChem10210160
Formal Charge0
Total Atoms78
Total Chiral Atoms0
Total Bonds84
Total Aromatic Bonds29

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP21730
Sequence
>5O9H_poly_Chain_R
NTLRVPDIL ALVIFAVVF LVGVLGNAL VVWVTAFEA KRTINAIWF 
LNLAVADFL ACLALPALF TSIVQHHHW PFGGAACSI LPSLILLNM 
YASILLLAT ISADRFLLV FKPAWCQRF RGAGLAWIL CAVAWGLAL 
LLTIPSALY RVVREEYFP PKVLCGVDH DKRRERAVA IVRLVLGFL 
WPLLTLTIC YTFILLRTW SARETRSTK TLKVVVAVV ASFFIFWLP 
YQVTGIMMS FLEPSSPTF LLLKKLDSL CVSFAYINC CINPIIYVV 
AGQGFQKSL PELLREVLT EESVVR


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
5O9HAPeptideComplement peptideC5a1Homo sapiens-NDT9513727-2.72018-01-1010.1038/nature25025
6C1QAPeptideComplement peptideC5a1Homo sapiensPMX53NDT9513727-2.92018-05-3010.1038/s41594-018-0067-z
6C1RAPeptideComplement peptideC5a1Homo sapiensPMX53Avacopan; Na-2.22018-05-3010.1038/s41594-018-0067-z
8HPTAPeptideComplement peptideC5a1Mus musculusC5a anaphylatoxin C-terminal peptide-Go/&β;1/&γ;23.392023-10-1810.1016/j.cell.2023.09.020
8HQCAPeptideComplement peptideC5a1Mus musculusC5a anaphylatoxin-Go/&β;1/&γ;23.892023-10-1810.1016/j.cell.2023.09.020
8IA2APeptideComplement peptideC5a1Homo sapiensC5a anaphylatoxin-Go/&β;1/&γ;23.212023-10-1810.1016/j.cell.2023.09.020
8JZZAPeptideComplement peptideC5a1Homo sapiensC5a-desArg-Go/&β;1/&γ;23.312023-10-1810.1016/j.cell.2023.09.020
5O9H (Dimer)APeptideComplement peptideC5a1Homo sapiens-NDT9513727-2.72018-01-1010.1038/nature25025




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Download 5O9H_poly.zip



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