Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:I6 4.27333620
2L:L:Y13 6.0375400
3L:L:N29 6.5525480
4L:L:R37 12.1675480
5L:L:F51 5.8025400
6L:L:V57 2.655400
7L:L:H67 8.41520
8L:L:Q71 3.5925410
9L:L:L72 4.43429710
10R:R:K28 8.75483
11R:R:F44 6.632517
12R:R:V47 3.85406
13R:R:E65 14.6445
14R:R:I73 6.6525436
15R:R:W74 6.89667607
16R:R:N77 6.306539
17R:R:L78 4.75167639
18R:R:D82 5.9925409
19R:R:L89 4.2775407
20R:R:H101 6.5625404
21R:R:W102 8.97478
22R:R:C109 4.674579
23R:R:M120 5.9225417
24R:R:F139 7.9425467
25R:R:W161 4.114509
26R:R:R175 4.982505
27R:R:R178 7.62422
28R:R:E180 9.8525421
29R:R:F182 7.91333623
30R:R:P183 6.0275424
31R:R:Y192 7.896555
32R:R:R198 6.2175453
33R:R:V202 3.8975455
34R:R:F211 6.7525408
35R:R:P214 3.3425409
36R:R:Y222 9.942508
37R:R:W230 8.92254114
38R:R:F251 5.234519
39R:R:F254 8.938518
40R:R:W255 7.66667619
41R:R:Y258 4.1925417
42R:R:Q259 8.295418
43R:R:T261 4.206514
44R:R:M265 5.968514
45R:R:F267 6.964104
46R:R:L268 6.3325402
47R:R:E269 5.0125403
48R:R:K280 3.885492
49R:R:D282 5.5675414
50R:R:V286 3.824515
51R:R:F288 6.055418
52R:R:Y290 6.13714717
53R:R:I291 7.5175415
54R:R:C294 4.1975407
55R:R:N296 8.2675439
56R:R:Y300 6.51739
57R:R:F307 7.75649
58R:R:R310 12.2867644
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:K185 R:R:P183 29.65916.69NoYes034
2R:R:H101 R:R:K185 27.500310.48YesNo043
3L:L:I6 R:R:F182 49.89611.3YesYes203
4L:L:I6 L:L:V57 46.15241.54YesYes000
5L:L:C21 L:L:F51 14.11351.4NoYes000
6L:L:F51 L:L:R37 22.016616.03YesYes000
7L:L:C34 L:L:R37 32.8345.57NoYes000
8L:L:C34 L:L:C55 33.88977.28NoNo000
9L:L:C55 L:L:R62 34.94012.79NoNo000
10L:L:R62 L:L:S59 35.99056.59NoNo000
11L:L:S59 L:L:V56 37.03043.23NoNo000
12L:L:V56 L:L:V57 38.0651.6NoYes000
13L:L:C21 L:L:C47 12.9637.28NoNo000
14L:L:C47 L:L:L43 11.80737.94NoNo000
15R:R:E180 R:R:F182 53.550111.66YesYes213
16R:R:H101 R:R:Q98 19.77892.47YesNo044
17R:R:Q98 R:R:V97 18.65472.87NoNo043
18R:R:F93 R:R:V97 17.52532.62NoNo073
19R:R:F93 R:R:L41 15.25089.74NoNo075
20R:R:I38 R:R:L41 14.10564.28NoNo055
21R:R:I38 R:R:V42 12.95513.07NoNo055
22R:R:L39 R:R:V42 11.79941.49NoNo055
23R:R:L284 R:R:L39 10.63842.77NoNo045
24R:R:E180 R:R:R178 82.89852.33YesYes212
25R:R:L187 R:R:R178 83.49619.72NoYes242
26L:L:D69 R:R:L187 89.09836.79NoNo004
27L:L:D69 R:R:H100 89.82498.82NoNo004
28L:L:Q71 R:R:H100 93.36052.47YesNo004
29L:L:Q71 R:R:D282 28.58233.92YesYes104
30R:R:D282 R:R:M265 71.388711.09YesYes144
31R:R:L278 R:R:M265 16.75925.65NoYes044
32R:R:L278 R:R:M264 15.76152.83NoNo044
33R:R:L268 R:R:M264 14.85854.24YesNo024
34R:R:E269 R:R:L268 14.67953.98YesYes032
35R:R:E269 R:R:S272 11.88110.06YesNo034
36R:R:P273 R:R:S272 19.03653.56NoNo024
37L:L:E32 R:R:P273 15.20071.57NoNo002
38L:L:E32 L:L:T33 11.55198.47NoNo000
39R:R:K279 R:R:M265 19.84475.76NoYes044
40R:R:F275 R:R:K279 18.941712.41NoNo034
41R:R:F275 R:R:L268 15.10869.74NoYes032
42R:R:L268 R:R:T274 13.06577.37YesNo021
43R:R:S272 R:R:T274 10.99914.8NoNo041
44L:L:M70 R:R:M265 36.50394.33NoYes004
45L:L:M70 R:R:V190 35.61414.56NoNo005
46R:R:V190 R:R:Y192 18.08876.31NoYes055
47L:L:L72 L:L:Q71 64.69662.66YesYes100
48L:L:L72 R:R:M120 16.94884.24YesYes107
49R:R:D282 R:R:V286 55.50612.92YesYes145
50L:L:L72 R:R:Y290 43.80157.03YesYes107
51R:R:V47 R:R:Y290 18.18612.52YesYes067
52R:R:C294 R:R:V47 10.3126.83YesYes076
53R:R:C293 R:R:Y290 1004.03NoYes087
54R:R:C293 R:R:D82 99.76046.22NoYes089
55R:R:D82 R:R:N55 15.97476.73YesNo099
56R:R:N55 R:R:P297 15.161211.4NoNo099
57R:R:D82 R:R:N296 53.45278.08YesYes099
58R:R:N296 R:R:P297 21.35329.77YesNo099
59R:R:P297 R:R:V58 34.17661.77NoNo098
60R:R:V301 R:R:V58 27.12121.6NoNo068
61R:R:F307 R:R:V301 25.344211.8YesNo096
62R:R:F307 R:R:R310 16.35653.21YesYes494
63R:R:D82 R:R:S123 31.16762.94YesNo099
64R:R:L78 R:R:S123 30.73843YesNo099
65R:R:L126 R:R:L78 42.29044.15NoYes379
66R:R:L126 R:R:N77 39.03124.12NoYes379
67R:R:L78 R:R:N296 33.03158.24YesYes399
68R:R:I130 R:R:L78 27.51354.28NoYes089
69R:R:I130 R:R:W74 31.37293.52NoYes087
70R:R:D133 R:R:W74 17.222618.98NoYes087
71R:R:N77 R:R:W161 27.27394.52YesYes099
72R:R:N119 R:R:W161 10.59372.26NoYes099
73R:R:R175 R:R:V190 20.84773.92YesNo055
74R:R:C109 R:R:R175 10.68584.18YesYes095
75R:R:M120 R:R:W255 26.37094.65YesYes179
76R:R:V202 R:R:Y192 10.56475.05YesYes555
77R:R:I124 R:R:P214 10.86483.39NoYes089
78R:R:F251 R:R:W255 22.19569.02YesYes199
79R:R:F251 R:R:L218 28.34543.65YesNo098
80R:R:L218 R:R:S131 28.12436.01NoNo089
81R:R:C221 R:R:S131 11.13335.16NoNo069
82R:R:S131 R:R:Y222 25.412710.17NoYes098
83R:R:D133 R:R:L137 15.68788.14NoNo088
84R:R:C144 R:R:L137 14.14243.17NoNo058
85R:R:C144 R:R:K140 11.03591.62NoNo056
86R:R:Q259 R:R:W255 13.12364.38YesYes189
87R:R:L207 R:R:Q259 16.87777.99NoYes058
88R:R:I263 R:R:L207 15.28765.71NoNo055
89R:R:F267 R:R:I263 11.96525.02YesNo1045
90R:R:V286 R:R:Y258 25.60752.52YesYes157
91R:R:Q259 R:R:Y258 12.5266.76YesYes187
92R:R:V244 R:R:Y222 15.856315.14NoYes078
93R:R:L226 R:R:V244 14.563611.92NoNo057
94R:R:L226 R:R:L241 10.65424.15NoNo056
95R:R:N296 R:R:Y300 11.63096.98YesYes399
96R:R:E180 R:R:P183 27.826812.58YesYes214
97R:R:V286 R:R:Y290 41.09253.79YesYes157
98R:R:M120 R:R:Y290 11.154411.97YesYes177
99R:R:W255 R:R:Y258 11.16764.82YesYes197
100R:R:R134 R:R:Y222 15.00869.26NoYes098
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:L2 R:R:F182 6.09 0 No Yes 0 3 0 1
L:L:Q3 R:R:Y181 14.65 0 No No 0 1 0 1
L:L:I6 R:R:F182 11.3 2 Yes Yes 0 3 0 1
L:L:Y23 R:R:F182 7.22 0 No Yes 0 3 0 1
L:L:D24 R:R:P25 6.44 0 No No 0 8 0 1
L:L:D24 R:R:D27 11.98 0 No No 0 9 0 1
L:L:A26 R:R:F182 8.32 2 No Yes 0 3 0 1
L:L:V28 R:R:E180 12.84 0 No Yes 0 1 0 1
L:L:N29 R:R:K28 11.19 8 Yes Yes 0 3 0 1
L:L:N30 R:R:L276 15.1 0 No No 0 3 0 1
L:L:R37 R:R:K28 21.04 8 Yes Yes 0 3 0 1
L:L:R40 R:R:T29 9.06 0 No No 0 5 0 1
L:L:I65 R:R:R178 3.76 2 No Yes 0 2 0 1
L:L:S66 R:R:H194 4.18 0 No No 0 1 0 1
L:L:H67 R:R:R178 14.67 2 Yes Yes 0 2 0 1
L:L:H67 R:R:L187 2.57 2 Yes No 0 4 0 1
L:L:H67 R:R:G189 3.18 2 Yes No 0 4 0 1
L:L:H67 R:R:D191 17.65 2 Yes No 0 4 0 1
L:L:K68 R:R:E199 2.7 0 No No 0 4 0 1
L:L:K68 R:R:P270 3.35 0 No No 0 3 0 1
L:L:K68 R:R:F275 2.48 0 No No 0 3 0 1
L:L:D69 R:R:H100 8.82 0 No No 0 4 0 1
L:L:D69 R:R:L187 6.79 0 No No 0 4 0 1
L:L:M70 R:R:V190 4.56 0 No No 0 5 0 1
L:L:M70 R:R:M265 4.33 0 No Yes 0 4 0 1
L:L:Q71 R:R:L92 5.32 1 Yes No 0 6 0 1
L:L:Q71 R:R:H100 2.47 1 Yes No 0 4 0 1
L:L:Q71 R:R:D282 3.92 1 Yes Yes 0 4 0 1
L:L:L72 R:R:L92 4.15 1 Yes No 0 6 0 1
L:L:L72 R:R:I116 2.85 1 Yes No 0 6 0 1
L:L:L72 R:R:L117 4.15 1 Yes No 0 4 0 1
L:L:L72 R:R:M120 4.24 1 Yes Yes 0 7 0 1
L:L:L72 R:R:V286 5.96 1 Yes Yes 0 5 0 1
L:L:L72 R:R:Y290 7.03 1 Yes Yes 0 7 0 1
L:L:G73 R:R:L117 5.13 0 No No 0 4 0 1
R:R:N31 R:R:T29 5.85 0 No No 1 5 2 1
R:R:F44 R:R:L92 8.53 1 Yes No 7 6 2 1
R:R:F44 R:R:V286 3.93 1 Yes Yes 7 5 2 1
R:R:F44 R:R:Y290 5.16 1 Yes Yes 7 7 2 1
R:R:V47 R:R:Y290 2.52 0 Yes Yes 6 7 2 1
R:R:A88 R:R:I116 4.87 0 No No 6 6 2 1
R:R:H100 R:R:I96 2.65 0 No No 4 5 1 2
R:R:I116 R:R:Y290 8.46 1 No Yes 6 7 1 1
R:R:L117 R:R:M120 2.83 1 No Yes 4 7 1 1
R:R:M120 R:R:W255 4.65 1 Yes Yes 7 9 1 2
R:R:M120 R:R:Y290 11.97 1 Yes Yes 7 7 1 1
R:R:R175 R:R:V190 3.92 0 Yes No 5 5 2 1
R:R:D191 R:R:V176 13.15 0 No No 4 4 1 2
R:R:L187 R:R:R178 9.72 2 No Yes 4 2 1 1
R:R:E179 R:R:Y181 12.35 0 No No 2 1 2 1
R:R:E180 R:R:F182 11.66 2 Yes Yes 1 3 1 1
R:R:E180 R:R:P183 12.58 2 Yes Yes 1 4 1 2
R:R:F182 R:R:P183 2.89 2 Yes Yes 3 4 1 2
R:R:V190 R:R:Y192 6.31 0 No Yes 5 5 1 2
R:R:E199 R:R:Y192 10.1 0 No Yes 4 5 1 2
R:R:E199 R:R:S266 2.87 0 No No 4 5 1 2
R:R:W255 R:R:Y258 4.82 1 Yes Yes 9 7 2 2
R:R:V286 R:R:Y258 2.52 1 Yes Yes 5 7 1 2
R:R:M265 R:R:T261 3.01 1 Yes Yes 4 4 1 2
R:R:D282 R:R:T261 4.34 1 Yes Yes 4 4 1 2
R:R:L278 R:R:M265 5.65 0 No Yes 4 4 2 1
R:R:K279 R:R:M265 5.76 0 No Yes 4 4 2 1
R:R:D282 R:R:M265 11.09 1 Yes Yes 4 4 1 1
R:R:E269 R:R:L268 3.98 0 Yes Yes 3 2 2 2
R:R:F275 R:R:L268 9.74 0 No Yes 3 2 1 2
R:R:E269 R:R:P270 3.14 0 Yes No 3 3 2 1
R:R:E269 R:R:S272 10.06 0 Yes No 3 4 2 2
R:R:P273 R:R:S272 3.56 0 No No 2 4 1 2
R:R:F275 R:R:K279 12.41 0 No No 3 4 1 2
R:R:K280 R:R:L276 2.82 9 Yes No 2 3 2 1
R:R:D282 R:R:V286 2.92 1 Yes Yes 4 5 1 1
R:R:V286 R:R:Y290 3.79 1 Yes Yes 5 7 1 1
R:R:C293 R:R:Y290 4.03 0 No Yes 8 7 2 1
R:R:E180 R:R:R178 2.33 2 Yes Yes 1 2 1 1
R:R:P25 R:R:T24 1.75 0 No No 8 4 1 2
L:L:E32 R:R:P273 1.57 0 No No 0 2 0 1
R:R:K28 R:R:S30 1.53 8 Yes No 3 4 1 2
L:L:I41 R:R:D27 1.4 0 No No 0 9 0 1
L:L:R40 R:R:K28 1.24 0 No Yes 0 3 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8JZZ_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.47
Number of Linked Nodes 337
Number of Links 389
Number of Hubs 58
Number of Links mediated by Hubs 215
Number of Communities 11
Number of Nodes involved in Communities 75
Number of Links involved in Communities 102
Path Summary
Number Of Nodes in MetaPath 101
Number Of Links MetaPath 100
Number of Shortest Paths 92227
Length Of Smallest Path 3
Average Path Length 15.9992
Length of Longest Path 40
Minimum Path Strength 1.225
Average Path Strength 5.92102
Maximum Path Strength 22.745
Minimum Path Correlation 0.7
Average Path Correlation 0.95222
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 2.77778
Average % Of Corr. Nodes 61.3994
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 47.4058
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Anaphylotoxins (complement system)   • G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Anaphylotoxins (complement system)   • G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP21730
Sequence
>8JZZ_nogp_Chain_R
LNTPVDKTS NTLRVPDIL ALVIFAVVF LVGVLGNAL VVWVTAFEA 
KRTINAIWF LNLAVADFL SCLALPILF TSIVQHHHW PFGGAACSI 
LPSLILLNM YASILLLAT ISADRFLLV FKPIWCQNF RGAGLAWIA 
CAVAWGLAL LLTIPSFLY RVVREEYFP PKVLCGVDY SHDKRRERA 
VAIVRLVLG FLWPLLTLT ICYTFILLR TWSRRATRS TKTLKVVVA 
VVASFFIFW LPYQVTGIM MSFLEPSSP TFLLLKKLD SLCVSFAYI 
NCCINPIIY VVAGQGFQG RLRKS


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
5O9HAPeptideComplement PeptideC5a1Homo sapiens-NDT9513727-2.72018-01-10doi.org/10.1038/nature25025
6C1QAPeptideComplement PeptideC5a1Homo sapiensPMX53NDT9513727-2.92018-05-30doi.org/10.1038/s41594-018-0067-z
6C1RAPeptideComplement PeptideC5a1Homo sapiensPMX53Avacopan; Na-2.22018-05-30doi.org/10.1038/s41594-018-0067-z
8HPTAPeptideComplement PeptideC5a1Mus musculusC5a anaphylatoxin C-terminal peptide-Go/β1/γ23.392023-10-18doi.org/10.1016/j.cell.2023.09.020
8HPT (No Gprot) APeptideComplement PeptideC5a1Mus musculusC5a anaphylatoxin C-terminal peptide-3.392023-10-18doi.org/10.1016/j.cell.2023.09.020
8HQCAPeptideComplement PeptideC5a1Mus musculusC5a anaphylatoxin-Go/β1/γ23.892023-10-18doi.org/10.1016/j.cell.2023.09.020
8HQC (No Gprot) APeptideComplement PeptideC5a1Mus musculusC5a anaphylatoxin-3.892023-10-18doi.org/10.1016/j.cell.2023.09.020
8IA2APeptideComplement PeptideC5a1Homo sapiensC5a anaphylatoxin-Go/β1/γ23.212023-10-18doi.org/10.1016/j.cell.2023.09.020
8IA2 (No Gprot) APeptideComplement PeptideC5a1Homo sapiensC5a anaphylatoxin-3.212023-10-18doi.org/10.1016/j.cell.2023.09.020
8JZZAPeptideComplement PeptideC5a1Homo sapiensC5a-desArg-Go/β1/γ23.312023-10-18doi.org/10.1016/j.cell.2023.09.020
8JZZ (No Gprot) APeptideComplement PeptideC5a1Homo sapiensC5a-desArg-3.312023-10-18doi.org/10.1016/j.cell.2023.09.020
7Y64APeptideComplement PeptideC5a1Homo sapiensC5a anaphylatoxin-Gi1/β1/γ22.92023-03-01doi.org/10.1038/s41422-023-00779-2
7Y64 (No Gprot) APeptideComplement PeptideC5a1Homo sapiensC5a anaphylatoxin-2.92023-03-01doi.org/10.1038/s41422-023-00779-2
7Y65APeptideComplement PeptideC5a1Homo sapiensC5a peptide-Gi1/β1/γ23.22023-03-01doi.org/10.1038/s41422-023-00779-2
7Y65 (No Gprot) APeptideComplement PeptideC5a1Homo sapiensC5a peptide-3.22023-03-01doi.org/10.1038/s41422-023-00779-2
7Y66APeptideComplement PeptideC5a1Homo sapiensBM213-Gi1/β1/γ22.92023-03-01doi.org/10.1038/s41422-023-00779-2
7Y66 (No Gprot) APeptideComplement PeptideC5a1Homo sapiensBM213-2.92023-03-01doi.org/10.1038/s41422-023-00779-2
7Y67APeptideComplement PeptideC5a1Homo sapiensC089 peptide-Gi1/β1/γ22.82023-03-01doi.org/10.1038/s41422-023-00779-2
7Y67 (No Gprot) APeptideComplement PeptideC5a1Homo sapiensC089 peptide-2.82023-03-01doi.org/10.1038/s41422-023-00779-2
8HK5APeptideComplement PeptideC5a1Homo sapiensComplement C5-Gi1/β1/γ232023-05-10doi.org/10.1038/s41589-023-01339-w
8HK5 (No Gprot) APeptideComplement PeptideC5a1Homo sapiensComplement C5-32023-05-10doi.org/10.1038/s41589-023-01339-w
8JZPAPeptideComplement PeptideC5a1Homo sapiensC5A anaphylatoxin-Go/β1/γ23.542025-01-15To be published
8JZP (No Gprot) APeptideComplement PeptideC5a1Homo sapiensC5A anaphylatoxin-3.542025-01-15To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8JZZ_nogp.zip



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