Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:P36 2.055403
2R:R:F48 5.2225406
3R:R:I73 4.265406
4R:R:W74 5.21607
5R:R:W102 10.725448
6R:R:F104 6.626507
7R:R:C109 5.745449
8R:R:L118 5.435405
9R:R:I124 3.3525468
10R:R:R175 3.465405
11R:R:F211 3.5875408
12R:R:P214 3.5125409
13R:R:Y222 7.67408
14R:R:F251 3.9675469
15R:R:F254 5.7525408
16R:R:W255 6.225669
17R:R:T261 4.3025414
18R:R:F275 3.8925483
19R:R:D282 6.3875414
20R:R:V286 8.7525415
21R:R:Y290 3.7825407
22R:R:C294 2.9375407
23R:R:F307 4.595429
24R:R:R310 4.588504
25L:L:?1 5.29167600
26L:L:K2 5.1275480
27L:L:?4 5.69400
28L:L:W5 10.255410
29L:L:?6 7.55667610
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:F44 R:R:Y290 84.03756.19NoYes077
2R:R:V47 R:R:Y290 22.36042.52NoYes067
3R:R:C294 R:R:V47 21.65273.42YesNo076
4R:R:F44 R:R:L89 28.429515.83NoNo077
5R:R:F48 R:R:L89 26.87116.09YesNo067
6R:R:F48 R:R:V52 22.11023.93YesNo065
7R:R:F83 R:R:V52 17.22073.93NoNo085
8R:R:F83 R:R:N55 13.88956.04NoNo089
9R:R:F44 R:R:V286 88.5412.62NoYes075
10L:L:?6 R:R:V286 82.50775.94YesYes105
11L:L:?6 R:R:Y258 90.099414.03YesNo007
12R:R:W255 R:R:Y258 83.32987.72YesNo097
13R:R:F251 R:R:W255 76.08126.01YesYes699
14R:R:F251 R:R:L218 1002.44YesNo098
15R:R:L218 R:R:S131 99.4713NoNo089
16R:R:S131 R:R:Y222 85.9898.9NoYes098
17R:R:R134 R:R:Y222 80.38464.12NoYes098
18R:R:I130 R:R:R134 79.48395.01NoNo089
19R:R:F75 R:R:I130 29.23015.02NoNo088
20R:R:F75 R:R:Y300 26.227812.38NoNo089
21R:R:R310 R:R:Y300 24.79096.17YesNo049
22R:R:F307 R:R:R310 10.33673.21YesYes094
23R:R:I130 R:R:W74 59.11075.87NoYes087
24R:R:A153 R:R:W74 20.16585.19NoYes077
25R:R:A153 R:R:I73 18.55743.25NoYes076
26R:R:A66 R:R:I73 12.25251.62NoYes056
27R:R:A66 R:R:L76 10.5441.58NoNo056
28R:R:D133 R:R:W74 18.793310.05NoYes087
29R:R:D133 R:R:L137 17.15632.71NoNo088
30R:R:C157 R:R:W74 11.80213.92NoYes067
31R:R:C157 R:R:N77 10.16514.72NoNo069
32R:R:T129 R:R:W74 12.27393.64NoYes067
33R:R:A160 R:R:T129 10.58691.68NoNo066
34R:R:S85 R:R:Y290 90.14945.09NoYes067
35R:R:N119 R:R:S85 89.36315.96NoNo096
36R:R:F104 R:R:W102 15.376421.05YesYes078
37R:R:C109 R:R:W102 18.16439.14YesYes498
38R:R:C109 R:R:R175 34.15542.79YesYes095
39R:R:R175 R:R:S114 64.23623.95YesNo055
40R:R:F172 R:R:S114 70.57695.28NoNo045
41R:R:F172 R:R:T168 83.45845.19NoNo046
42R:R:L118 R:R:T168 84.344810.32YesNo056
43R:R:L118 R:R:N119 87.74754.12YesNo059
44R:R:I124 R:R:P214 10.20093.39YesYes089
45R:R:C221 R:R:S131 28.30083.44NoNo069
46R:R:C221 R:R:F135 26.72816.98NoNo068
47R:R:F135 R:R:F139 21.917210.72NoNo087
48R:R:C144 R:R:L137 10.58693.17NoNo058
49R:R:F139 R:R:V138 18.75763.93NoNo778
50R:R:I225 R:R:V138 17.16357.68NoNo088
51R:R:F172 R:R:I169 14.44712.51NoNo043
52R:R:I169 R:R:L173 10.05792.85NoNo034
53R:R:G189 R:R:R175 32.14674.5NoYes045
54L:L:?1 R:R:G189 30.6672.96YesNo004
55L:L:?1 L:L:K2 17.54959.76YesYes000
56R:R:I263 R:R:L207 14.79025.71NoNo055
57R:R:L207 R:R:Q259 17.20646.65NoNo058
58R:R:Q259 R:R:Y258 18.52175.64NoNo087
59R:R:F211 R:R:Q259 13.79667.03YesNo088
60R:R:F251 R:R:L215 26.44223.65YesNo095
61R:R:F211 R:R:L215 11.49472.44YesNo085
62R:R:F252 R:R:L215 19.73693.65NoNo055
63R:R:F252 R:R:I253 21.16661.26NoNo055
64R:R:F254 R:R:I253 20.19441.26YesNo085
65R:R:F254 R:R:I291 19.551115.07YesNo085
66R:R:C294 R:R:I291 16.55593.27YesNo075
67R:R:I225 R:R:T229 15.49791.52NoNo088
68R:R:T229 R:R:W230 10.39391.21NoNo084
69R:R:I291 R:R:I295 13.91811.47NoNo057
70R:R:I295 R:R:I299 15.13332.94NoNo077
71R:R:A303 R:R:I299 12.59561.62NoNo067
72R:R:A303 R:R:K239 10.04363.21NoNo067
73L:L:?6 R:R:T261 10.97293.53YesYes104
74L:L:K2 R:R:F275 14.85452.48YesYes803
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:F44 R:R:V286 2.62 0 No Yes 7 5 2 1
L:L:?4 R:R:I96 2.68 0 Yes No 0 5 0 1
L:L:?4 R:R:H100 14.5 0 Yes No 0 4 0 1
R:R:G189 R:R:R175 4.5 0 No Yes 4 5 1 2
R:R:D191 R:R:V176 4.38 0 No No 4 4 1 2
L:L:?1 R:R:R178 5.26 0 Yes No 0 2 0 1
L:L:?1 R:R:L187 5.99 0 Yes No 0 4 0 1
L:L:?1 R:R:G189 2.96 0 Yes No 0 4 0 1
R:R:D191 R:R:S193 2.94 0 No No 4 4 1 2
L:L:?1 R:R:D191 3.52 0 Yes No 0 4 0 1
R:R:E199 R:R:Y192 16.83 0 No No 4 5 1 2
L:L:K2 R:R:E199 5.4 8 Yes No 0 4 0 1
R:R:W255 R:R:Y258 7.72 6 Yes No 9 7 2 1
R:R:Q259 R:R:Y258 5.64 0 No No 8 7 2 1
L:L:?6 R:R:Y258 14.03 1 Yes No 0 7 0 1
R:R:G262 R:R:T261 3.64 1 No Yes 5 4 1 1
R:R:C285 R:R:T261 8.45 0 No Yes 6 4 2 1
L:L:?6 R:R:T261 3.53 1 Yes Yes 0 4 0 1
L:L:?6 R:R:G262 4.09 1 Yes No 0 5 0 1
R:R:D282 R:R:M265 6.93 1 Yes No 4 4 1 2
R:R:F275 R:R:P270 4.33 8 Yes No 3 3 1 2
R:R:F275 R:R:K279 7.44 8 Yes No 3 4 1 1
L:L:K2 R:R:F275 2.48 8 Yes Yes 0 3 0 1
L:L:K2 R:R:K279 2.87 8 Yes No 0 4 0 1
L:L:P3 R:R:K279 3.35 0 No No 0 4 0 1
R:R:D282 R:R:V286 4.38 1 Yes Yes 4 5 1 1
L:L:W5 R:R:D282 5.58 1 Yes Yes 0 4 0 1
L:L:?6 R:R:D282 8.66 1 Yes Yes 0 4 0 1
L:L:W5 R:R:V286 22.07 1 Yes Yes 0 5 0 1
L:L:?6 R:R:V286 5.94 1 Yes Yes 0 5 0 1
R:R:T261 R:R:V260 1.59 1 Yes No 4 6 1 2
R:R:F275 R:R:S272 1.32 8 Yes No 3 4 1 2
L:L:?4 R:R:L92 1.3 0 Yes No 0 6 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7Y67_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.44
Number of Linked Nodes 253
Number of Links 270
Number of Hubs 29
Number of Links mediated by Hubs 108
Number of Communities 8
Number of Nodes involved in Communities 27
Number of Links involved in Communities 30
Path Summary
Number Of Nodes in MetaPath 75
Number Of Links MetaPath 74
Number of Shortest Paths 30832
Length Of Smallest Path 3
Average Path Length 15.2991
Length of Longest Path 35
Minimum Path Strength 1.26
Average Path Strength 5.40385
Maximum Path Strength 16.05
Minimum Path Correlation 0.7
Average Path Correlation 0.92088
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.22581
Average % Of Corr. Nodes 44.7351
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 32.8414
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeMEA
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeMEA
NameN-METHYLPHENYLALANINE
Synonyms
Identifier
FormulaC10 H13 N O2
Molecular Weight179.216
SMILES
PubChem6951135
Formal Charge0
Total Atoms26
Total Chiral Atoms1
Total Bonds26
Total Aromatic Bonds6

CodeZAL
PDB ResiduesL:L:?4
Environment DetailsOpen EMBL-EBI Page
CodeZAL
Name3-cyclohexyl-D-alanine
Synonyms
Identifier
FormulaC9 H17 N O2
Molecular Weight171.237
SMILES
PubChem736026
Formal Charge0
Total Atoms29
Total Chiral Atoms1
Total Bonds29
Total Aromatic Bonds0

CodeDAR
PDB ResiduesL:L:?6
Environment DetailsOpen EMBL-EBI Page
CodeDAR
NameD-arginine
Synonyms(2R)-2-amino-5-guanidinopentanoic acid
Identifier
FormulaC6 H15 N4 O2
Molecular Weight175.209
SMILES
PubChem17753939
Formal Charge1
Total Atoms27
Total Chiral Atoms1
Total Bonds26
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP21730
Sequence
>7Y67_nogp_Chain_R
TLRVPDILA LVIFAVVFL VGVLGNALV VWVTAFEAK RTINAIWFL 
NLAVADFLS CLALPILFT SIVQHHHWP FGGAACSIL PSLALLNMY 
ASILLLATI SADRFLLVF KPIWCQNFR GAGLAWIAC AVAWGLALL 
LTIPSFLYR VVREEVLCG VDYSHDKRR ERAVAIVRL VLGFLWPLL 
TLTICYTFI LLRTWSRRA TRSTKTLKV VVAVVASFF IFWLPYQVT 
GIMMSFLEP SSPTFLLLK KLDSLCVSF AYINCCINP IIYVVAGQG 
FQGRLRKS


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
5O9HAPeptideComplement PeptideC5a1Homo sapiens-NDT9513727-2.72018-01-10doi.org/10.1038/nature25025
6C1QAPeptideComplement PeptideC5a1Homo sapiensPMX53NDT9513727-2.92018-05-30doi.org/10.1038/s41594-018-0067-z
6C1RAPeptideComplement PeptideC5a1Homo sapiensPMX53Avacopan; Na-2.22018-05-30doi.org/10.1038/s41594-018-0067-z
7Y64APeptideComplement PeptideC5a1Homo sapiensC5a-Gi1/β1/γ22.92023-03-01doi.org/10.1038/s41422-023-00779-2
7Y64 (No Gprot) APeptideComplement PeptideC5a1Homo sapiensC5a-2.92023-03-01doi.org/10.1038/s41422-023-00779-2
7Y65APeptideComplement PeptideC5a1Homo sapiensC5a (C-terminal peptide)-Gi1/β1/γ23.22023-03-01doi.org/10.1038/s41422-023-00779-2
7Y65 (No Gprot) APeptideComplement PeptideC5a1Homo sapiensC5a (C-terminal peptide)-3.22023-03-01doi.org/10.1038/s41422-023-00779-2
7Y66APeptideComplement PeptideC5a1Homo sapiensBM213-Gi1/β1/γ22.92023-03-01doi.org/10.1038/s41422-023-00779-2
7Y66 (No Gprot) APeptideComplement PeptideC5a1Homo sapiensBM213-2.92023-03-01doi.org/10.1038/s41422-023-00779-2
7Y67APeptideComplement PeptideC5a1Homo sapiensC089 peptide-Gi1/β1/γ22.82023-03-01doi.org/10.1038/s41422-023-00779-2
7Y67 (No Gprot) APeptideComplement PeptideC5a1Homo sapiensC089 peptide-2.82023-03-01doi.org/10.1038/s41422-023-00779-2
8HK5APeptideComplement PeptideC5a1Homo sapiensC5a-Gi1/β1/γ232023-05-10doi.org/10.1038/s41589-023-01339-w
8HK5 (No Gprot) APeptideComplement PeptideC5a1Homo sapiensC5a-32023-05-10doi.org/10.1038/s41589-023-01339-w
8HPTAPeptideComplement PeptideC5a1Mus musculusC5a (C-terminal peptide)-Go/β1/γ23.392023-10-18doi.org/10.1016/j.cell.2023.09.020
8HPT (No Gprot) APeptideComplement PeptideC5a1Mus musculusC5a (C-terminal peptide)-3.392023-10-18doi.org/10.1016/j.cell.2023.09.020
8HQCAPeptideComplement PeptideC5a1Mus musculusC5a-Go/β1/γ23.892023-10-18doi.org/10.1016/j.cell.2023.09.020
8HQC (No Gprot) APeptideComplement PeptideC5a1Mus musculusC5a-3.892023-10-18doi.org/10.1016/j.cell.2023.09.020
8IA2APeptideComplement PeptideC5a1Homo sapiensC5a-Go/β1/γ23.212023-10-18doi.org/10.1016/j.cell.2023.09.020
8IA2 (No Gprot) APeptideComplement PeptideC5a1Homo sapiensC5a-3.212023-10-18doi.org/10.1016/j.cell.2023.09.020
8JZZAPeptideComplement PeptideC5a1Homo sapiensC5a-des-Arg-Go/β1/γ23.312023-10-18doi.org/10.1016/j.cell.2023.09.020
8JZZ (No Gprot) APeptideComplement PeptideC5a1Homo sapiensC5a-des-Arg-3.312023-10-18doi.org/10.1016/j.cell.2023.09.020
9KWGAPeptideComplement PeptideC5a1Mus musculusC5a-Go/β1/γ23.152025-11-2610.1101/2025.05.26.656101
9KWG (No Gprot) APeptideComplement PeptideC5a1Mus musculusC5a-3.152025-11-2610.1101/2025.05.26.656101
9KWXAPeptideComplement PeptideC5a1Mus musculusC5a-des-Arg-Go/β1/γ23.132025-11-2610.1101/2025.05.26.656101
9KWX (No Gprot) APeptideComplement PeptideC5a1Mus musculusC5a-des-Arg-3.132025-11-2610.1101/2025.05.26.656101
9KX6APeptideComplement PeptideC5a1Mus musculusC5a-des-Arg-Go/β1/γ23.112025-11-2610.1101/2025.05.26.656101
9KX6 (No Gprot) APeptideComplement PeptideC5a1Mus musculusC5a-des-Arg-3.112025-11-2610.1101/2025.05.26.656101
9KXSAPeptideComplement PeptideC5a1Mus musculusEP67-Go/β1/γ23.312025-11-2610.1101/2025.05.26.656101
9KXS (No Gprot) APeptideComplement PeptideC5a1Mus musculusEP67-3.312025-11-2610.1101/2025.05.26.656101
9UMRAPeptideComplement PeptideC5a1Homo sapiensC5a-pep-Go/β1/γ23.152025-11-2610.1101/2025.05.26.656101
9UMR (No Gprot) APeptideComplement PeptideC5a1Homo sapiensC5a-pep-3.152025-11-2610.1101/2025.05.26.656101
9UMXAPeptideComplement PeptideC5a1Homo sapiensEP54-Go/β1/γ23.22025-11-2610.1101/2025.05.26.656101
9UMX (No Gprot) APeptideComplement PeptideC5a1Homo sapiensEP54-3.22025-11-2610.1101/2025.05.26.656101
8JZPAPeptideComplement PeptideC5a1Homo sapiensC5a-Go/β1/γ23.542025-01-15To be published
8JZP (No Gprot) APeptideComplement PeptideC5a1Homo sapiensC5a-3.542025-01-15To be published
9KUGAPeptideComplement PeptideC5a1Homo sapiensEP67-Go/β1/γ23.072025-11-2610.1101/2025.05.26.656101
9KUG (No Gprot) APeptideComplement PeptideC5a1Homo sapiensEP67-3.072025-11-2610.1101/2025.05.26.656101




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 7Y67_nogp.zip



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