Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:F1 5.36400
2L:L:K2 4.7125400
3L:L:R8 7.71600
4R:R:P36 4.7375403
5R:R:F44 4.09667637
6R:R:I73 4.5575406
7R:R:W74 6.35607
8R:R:F75 6.91418
9R:R:L78 3.4975469
10R:R:D82 4.4775469
11R:R:L89 5.18437
12R:R:W102 9.746588
13R:R:S114 5.5525405
14R:R:F135 6.335408
15R:R:C144 3.215475
16R:R:Y192 6.42595
17R:R:Y222 7.206528
18R:R:L226 3.83405
19R:R:F251 3.4675429
20R:R:F254 5.484548
21R:R:W255 6.146529
22R:R:Y258 7.055427
23R:R:Q259 5.845428
24R:R:M265 3.4475454
25R:R:F275 3.7125453
26R:R:D282 4.19404
27R:R:Y290 5.518537
28R:R:F307 7.415419
29R:R:R310 6.1525414
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:F1 R:R:L187 11.37043.65YesNo004
2R:R:H100 R:R:L187 12.76251.29NoNo044
3L:L:A5 R:R:H100 15.51512.93NoNo004
4L:L:A5 R:R:D282 16.76491.54NoYes004
5L:L:R8 R:R:D282 67.14659.53YesYes004
6L:L:L4 L:L:R8 46.87367.29NoYes000
7L:L:K2 L:L:L4 46.07874.23YesNo000
8R:R:D282 R:R:M265 22.02892.77YesYes044
9R:R:F275 R:R:M265 16.39312.49YesYes534
10L:L:K2 R:R:F275 16.28636.2YesYes003
11L:L:K2 R:R:E199 50.55966.75YesNo004
12R:R:D282 R:R:V286 58.91642.92YesNo045
13R:R:V286 R:R:Y290 18.45762.52NoYes357
14L:L:?7 L:L:R8 13.46656.18NoYes000
15L:L:?7 R:R:L117 10.17997.04NoNo004
16L:L:R8 R:R:Y258 99.189213.38YesYes007
17R:R:F44 R:R:V286 39.43443.93YesNo375
18R:R:A40 R:R:F44 14.83092.77NoYes367
19R:R:A40 R:R:L284 13.71961.58NoNo064
20R:R:F44 R:R:L89 15.29762.44YesYes377
21R:R:L89 R:R:Y290 13.952910.55YesYes377
22R:R:F211 R:R:Q259 13.79479.37NoYes088
23R:R:F211 R:R:L256 11.52463.65NoNo085
24R:R:L256 R:R:P257 12.04273.28NoNo059
25R:R:F288 R:R:P257 10.89974.33NoNo089
26R:R:F48 R:R:L89 24.31886.09NoYes067
27R:R:F48 R:R:V52 21.85097.87NoNo065
28R:R:C86 R:R:V52 19.39091.71NoNo055
29R:R:W255 R:R:Y258 89.80423.86YesYes297
30R:R:N292 R:R:W255 1007.91NoYes099
31R:R:N292 R:R:N296 99.715210.9NoNo099
32R:R:D82 R:R:N296 57.73782.69YesNo099
33R:R:D82 R:R:N55 19.30796.73YesNo099
34R:R:N55 R:R:P297 15.47958.15NoNo099
35R:R:D82 R:R:L78 45.15724.07YesYes699
36R:R:L126 R:R:L78 84.98324.15NoYes079
37R:R:L126 R:R:N77 75.9662.75NoNo079
38R:R:C157 R:R:N77 68.23419.45NoNo069
39R:R:C157 R:R:W74 66.6642.61NoYes067
40R:R:I130 R:R:W74 28.55053.52NoYes087
41R:R:F75 R:R:I130 25.06623.77YesNo188
42R:R:F75 R:R:Y300 21.538513.41YesNo189
43R:R:F307 R:R:Y300 14.58973.09YesNo199
44R:R:F307 R:R:V61 11.030310.49YesNo196
45R:R:L127 R:R:N296 41.8394.12NoNo089
46R:R:L127 R:R:L78 41.25372.77NoYes089
47R:R:P297 R:R:V58 14.50271.77NoNo098
48R:R:T62 R:R:V58 10.51611.59NoNo068
49R:R:D133 R:R:W74 25.327316.75NoYes087
50R:R:D133 R:R:L137 23.66238.14NoNo088
51R:R:A153 R:R:W74 11.14897.78NoYes077
52R:R:C293 R:R:C86 10.38961.82NoNo085
53R:R:E199 R:R:Y192 47.023915.71NoYes045
54R:R:V190 R:R:Y192 38.86892.52NoYes055
55R:R:R175 R:R:V190 37.52032.62NoNo055
56R:R:P113 R:R:R175 25.018812.97NoNo065
57R:R:L112 R:R:P113 23.70181.64NoNo056
58R:R:I91 R:R:L112 22.26227.14NoNo065
59R:R:F104 R:R:I91 20.92942.51NoNo076
60R:R:F104 R:R:W102 10.709925.05NoYes078
61R:R:R175 R:R:S171 12.20885.27NoNo055
62R:R:S114 R:R:S171 10.70993.26YesNo055
63R:R:F251 R:R:W255 39.5574.01YesYes299
64R:R:F251 R:R:L218 38.21632.44YesNo298
65R:R:L218 R:R:S131 11.62353NoNo289
66R:R:C221 R:R:S131 11.25573.44NoNo069
67R:R:L218 R:R:Y222 25.57648.21NoYes288
68R:R:C221 R:R:F135 10.02579.78NoYes068
69R:R:C144 R:R:L137 16.51183.17YesNo758
70R:R:C144 R:R:W143 12.983.92YesNo055
71R:R:V244 R:R:Y222 14.878413.88NoYes078
72R:R:V247 R:R:Y222 10.02573.79NoYes078
73R:R:L226 R:R:V244 13.7754.47YesNo057
74R:R:Q259 R:R:W255 13.06314.38YesYes289
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?0 R:R:D191 12.19 0 No No 0 4 0 1
L:L:F1 R:R:R178 9.62 0 Yes No 0 2 0 1
L:L:F1 R:R:L187 3.65 0 Yes No 0 4 0 1
L:L:F1 R:R:G189 4.52 0 Yes No 0 4 0 1
L:L:K2 R:R:E199 6.75 0 Yes No 0 4 0 1
L:L:K2 R:R:F275 6.2 0 Yes Yes 0 3 0 1
L:L:P3 R:R:K279 5.02 0 No No 0 4 0 1
L:L:A5 R:R:H100 2.93 0 No No 0 4 0 1
L:L:A6 R:R:L92 4.73 0 No No 0 6 0 1
L:L:?7 R:R:I116 2.9 0 No No 0 6 0 1
L:L:?7 R:R:L117 7.04 0 No No 0 4 0 1
L:L:R8 R:R:Y258 13.38 0 Yes Yes 0 7 0 1
L:L:R8 R:R:T261 3.88 0 Yes No 0 4 0 1
L:L:R8 R:R:G262 6 0 Yes No 0 5 0 1
L:L:R8 R:R:D282 9.53 0 Yes Yes 0 4 0 1
R:R:A88 R:R:I116 3.25 0 No No 6 6 2 1
R:R:L117 R:R:Y121 10.55 0 No No 4 7 1 2
R:R:D191 R:R:S193 2.94 0 No No 4 4 1 2
R:R:E199 R:R:Y192 15.71 0 No Yes 4 5 1 2
R:R:E199 R:R:S266 2.87 0 No No 4 5 1 2
R:R:W255 R:R:Y258 3.86 2 Yes Yes 9 7 2 1
R:R:Q259 R:R:W255 4.38 2 Yes Yes 8 9 2 2
R:R:Q259 R:R:Y258 5.64 2 Yes Yes 8 7 2 1
R:R:A289 R:R:Y258 5.34 0 No Yes 8 7 2 1
R:R:C285 R:R:T261 6.76 0 No No 6 4 2 1
R:R:F275 R:R:M265 2.49 5 Yes Yes 3 4 1 2
R:R:K279 R:R:M265 2.88 5 No Yes 4 4 1 2
R:R:D282 R:R:M265 2.77 0 Yes Yes 4 4 1 2
R:R:F275 R:R:L268 2.44 5 Yes No 3 2 1 2
R:R:E269 R:R:P270 3.14 0 No No 3 3 2 1
R:R:F275 R:R:K279 3.72 5 Yes No 3 4 1 1
R:R:D282 R:R:V286 2.92 0 Yes No 4 5 1 2
R:R:V286 R:R:Y290 2.52 3 No Yes 5 7 2 2
R:R:L92 R:R:Y290 2.34 0 No Yes 6 7 1 2
L:L:?0 R:R:H194 1.93 0 No No 0 1 0 1
L:L:K2 R:R:P270 1.67 0 Yes No 0 3 0 1
L:L:A5 R:R:D282 1.54 0 No Yes 0 4 0 1
R:R:D191 R:R:V176 1.46 0 No No 4 4 1 2
R:R:H100 R:R:S95 1.39 0 No No 4 4 1 2
R:R:H100 R:R:L187 1.29 0 No No 4 4 1 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7Y66_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.44
Number of Linked Nodes 266
Number of Links 286
Number of Hubs 29
Number of Links mediated by Hubs 114
Number of Communities 9
Number of Nodes involved in Communities 42
Number of Links involved in Communities 49
Path Summary
Number Of Nodes in MetaPath 75
Number Of Links MetaPath 74
Number of Shortest Paths 49827
Length Of Smallest Path 3
Average Path Length 15.3958
Length of Longest Path 35
Minimum Path Strength 1.305
Average Path Strength 5.61629
Maximum Path Strength 17.095
Minimum Path Correlation 0.7
Average Path Correlation 0.931659
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.33333
Average % Of Corr. Nodes 50.8732
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 37.3438
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeACE
PDB ResiduesL:L:?0
Environment DetailsOpen EMBL-EBI Page
CodeACE
NameACETYL GROUP
Synonyms
Identifier
FormulaC2 H4 O
Molecular Weight44.053
SMILES
PubChem177
Formal Charge0
Total Atoms7
Total Chiral Atoms0
Total Bonds6
Total Aromatic Bonds0

CodeDAL
PDB ResiduesL:L:?7
Environment DetailsOpen EMBL-EBI Page
CodeDAL
NameD-Alanine
Synonyms(R)-alanine
Identifier
FormulaC3 H7 N O2
Molecular Weight89.093
SMILES
PubChem71080
Formal Charge0
Total Atoms13
Total Chiral Atoms1
Total Bonds12
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP21730
Sequence
>7Y66_nogp_Chain_R
RVPDILALV IFAVVFLVG VLGNALVVW VTAFEAKRT INAIWFLNL 
AVADFLSCL ALPILFTSI VQHHHWPFG GAACSILPS LILLNMYAS 
ILLLATISA DRFLLVFKP IWCQNFRGA GLAWIACAV AWGLALLLT 
IPSFLYRVV REEYFPPKV LCGVDYSHD KRRERAVAI VRLVLGFLW 
PLLTLTICY TFILLRTWS RRATRSTKT LKVVVAVVA SFFIFWLPY 
QVTGIMMSF LEPSSPTFL LLKKLDSLC VSFAYINCC INPIIYVVA 
GQGFQGRLR KS


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
5O9HAPeptideComplement PeptideC5a1Homo sapiens-NDT9513727-2.72018-01-10doi.org/10.1038/nature25025
6C1QAPeptideComplement PeptideC5a1Homo sapiensPMX53NDT9513727-2.92018-05-30doi.org/10.1038/s41594-018-0067-z
6C1RAPeptideComplement PeptideC5a1Homo sapiensPMX53Avacopan; Na-2.22018-05-30doi.org/10.1038/s41594-018-0067-z
8HPTAPeptideComplement PeptideC5a1Mus musculusC5a anaphylatoxin C-terminal peptide-Go/β1/γ23.392023-10-18doi.org/10.1016/j.cell.2023.09.020
8HPT (No Gprot) APeptideComplement PeptideC5a1Mus musculusC5a anaphylatoxin C-terminal peptide-3.392023-10-18doi.org/10.1016/j.cell.2023.09.020
8HQCAPeptideComplement PeptideC5a1Mus musculusC5a anaphylatoxin-Go/β1/γ23.892023-10-18doi.org/10.1016/j.cell.2023.09.020
8HQC (No Gprot) APeptideComplement PeptideC5a1Mus musculusC5a anaphylatoxin-3.892023-10-18doi.org/10.1016/j.cell.2023.09.020
8IA2APeptideComplement PeptideC5a1Homo sapiensC5a anaphylatoxin-Go/β1/γ23.212023-10-18doi.org/10.1016/j.cell.2023.09.020
8IA2 (No Gprot) APeptideComplement PeptideC5a1Homo sapiensC5a anaphylatoxin-3.212023-10-18doi.org/10.1016/j.cell.2023.09.020
8JZZAPeptideComplement PeptideC5a1Homo sapiensC5a-desArg-Go/β1/γ23.312023-10-18doi.org/10.1016/j.cell.2023.09.020
8JZZ (No Gprot) APeptideComplement PeptideC5a1Homo sapiensC5a-desArg-3.312023-10-18doi.org/10.1016/j.cell.2023.09.020
7Y64APeptideComplement PeptideC5a1Homo sapiensC5a anaphylatoxin-Gi1/β1/γ22.92023-03-01doi.org/10.1038/s41422-023-00779-2
7Y64 (No Gprot) APeptideComplement PeptideC5a1Homo sapiensC5a anaphylatoxin-2.92023-03-01doi.org/10.1038/s41422-023-00779-2
7Y65APeptideComplement PeptideC5a1Homo sapiensC5a peptide-Gi1/β1/γ23.22023-03-01doi.org/10.1038/s41422-023-00779-2
7Y65 (No Gprot) APeptideComplement PeptideC5a1Homo sapiensC5a peptide-3.22023-03-01doi.org/10.1038/s41422-023-00779-2
7Y66APeptideComplement PeptideC5a1Homo sapiensBM213-Gi1/β1/γ22.92023-03-01doi.org/10.1038/s41422-023-00779-2
7Y66 (No Gprot) APeptideComplement PeptideC5a1Homo sapiensBM213-2.92023-03-01doi.org/10.1038/s41422-023-00779-2
7Y67APeptideComplement PeptideC5a1Homo sapiensC089 peptide-Gi1/β1/γ22.82023-03-01doi.org/10.1038/s41422-023-00779-2
7Y67 (No Gprot) APeptideComplement PeptideC5a1Homo sapiensC089 peptide-2.82023-03-01doi.org/10.1038/s41422-023-00779-2
8HK5APeptideComplement PeptideC5a1Homo sapiensComplement C5-Gi1/β1/γ232023-05-10doi.org/10.1038/s41589-023-01339-w
8HK5 (No Gprot) APeptideComplement PeptideC5a1Homo sapiensComplement C5-32023-05-10doi.org/10.1038/s41589-023-01339-w
8JZPAPeptideComplement PeptideC5a1Homo sapiensC5A anaphylatoxin-Go/β1/γ23.542025-01-15To be published
8JZP (No Gprot) APeptideComplement PeptideC5a1Homo sapiensC5A anaphylatoxin-3.542025-01-15To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 7Y66_nogp.zip



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