Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1A:A:L23 3.9725446
2A:A:V34 6.2575
3A:A:L36 4.04477
4A:A:L37 5.792509
5A:A:E43 4.1825409
6A:A:I49 3.7225477
7A:A:F189 8.4225409
8A:A:F191 9.935475
9A:A:L194 5.9425474
10A:A:F196 7.635677
11A:A:M198 5.77577
12A:A:F199 7.10833625
13A:A:T202 5.59754169
14A:A:Q204 6.5175429
15A:A:S206 5.39428
16A:A:R208 4.06529
17A:A:K210 6.24143729
18A:A:W211 5.20875829
19A:A:I212 4.7625428
20A:A:H213 7.9425428
21A:A:C214 3.6375427
22A:A:F215 8.25429
23A:A:I221 4.405428
24A:A:I222 4.094577
25A:A:V225 5.6675437
26A:A:Y230 6.928538
27A:A:D231 6.57539
28A:A:M240 2.83406
29A:A:M243 3.428538
30A:A:H244 7.67434
31A:A:F250 7.662509
32A:A:N256 5.5125428
33A:A:W258 9.41833625
34A:A:F259 5.9575429
35A:A:I265 3.6725408
36A:A:F267 4.6145179
37A:A:L268 5.416538
38A:A:K270 4.4675439
39A:A:L273 4.3125436
40A:A:F274 4.878539
41A:A:L283 6.6375437
42A:A:C286 8.295436
43A:A:Y287 9.14429737
44A:A:Y290 9.018537
45A:A:Y296 6.455634
46A:A:Y302 12.98436
47A:A:I303 4.6825437
48A:A:F307 7.095638
49A:A:N311 5.74254138
50A:A:K317 5.74754137
51A:A:Y320 8.148336147
52A:A:T321 9.335435
53A:A:H322 10.2954179
54A:A:F323 4.7225434
55A:A:Q333 6.5675475
56A:A:F336 5.90857778
57A:A:I343 2.995407
58A:A:K345 5.324145
59A:A:L348 4.34409
60A:A:F354 5.97333605
61B:B:L14 3.48408
62B:B:I37 4.19333692
63B:B:V40 4.868593
64B:B:I43 3.7375403
65B:B:R48 4.5125447
66B:B:L51 6.906549
67B:B:H54 8.84333649
68B:B:Y59 8.984528
69B:B:M61 3.7925446
70B:B:W63 6.04714747
71B:B:L70 4.728545
72B:B:V71 4.225108
73B:B:D76 5.324549
74B:B:L79 4.66254107
75B:B:I80 9.585448
76B:B:I81 4.555107
77B:B:W82 8.93429749
78B:B:S84 4.39445
79B:B:N88 6.665407
80B:B:K89 5.59286749
81B:B:I93 5.722507
82B:B:W99 7.3825829
83B:B:Y105 4.521676106
84B:B:N110 7.8275424
85B:B:Y111 7.304524
86B:B:V112 4.5645108
87B:B:L117 3.82529
88B:B:C121 3.7375428
89B:B:I123 4.2425426
90B:B:Y124 6.166506
91B:B:L139 7.2425409
92B:B:H142 7.528529
93B:B:Y145 7.17333928
94B:B:C148 3.195456
95B:B:C149 3.368528
96B:B:F151 5.14833629
97B:B:L152 3.82453
98B:B:I157 5.055427
99B:B:V158 4.29455
100B:B:T159 5.842529
101B:B:S160 5.2456
102B:B:D163 7.424529
103B:B:C166 3.885458
104B:B:L168 3.982556
105B:B:W169 9.53667628
106B:B:Q176 7.61424
107B:B:F180 8.294557
108B:B:H183 7.97667659
109B:B:D186 5.8075429
110B:B:V187 5.024559
111B:B:L190 4.935455
112B:B:F199 7.34333659
113B:B:V200 7.255466
114B:B:S201 5.2625459
115B:B:C204 5.122527
116B:B:D205 5.265459
117B:B:K209 10.58456
118B:B:L210 4.836505
119B:B:W211 8.93333658
120B:B:Q220 7.3875467
121B:B:H225 8.61669
122B:B:D228 7.555429
123B:B:I232 5.8625468
124B:B:F235 6.72758116
125B:B:P236 6.7254117
126B:B:F241 8.062566
127B:B:T243 6.6575468
128B:B:D246 7.55429
129B:B:D247 8.552569
130B:B:T249 5.9025466
131B:B:R251 12.7425468
132B:B:F253 9.03466
133B:B:D258 11.38467
134B:B:M262 5.65404
135B:B:T263 6.23461
136B:B:Y264 6.422505
137B:B:F278 5.833336117
138B:B:R283 9.578599
139B:B:L284 5.4575405
140B:B:Y289 7.896676157
141B:B:D290 9.07406
142B:B:N295 5.9685156
143B:B:V296 4.645405
144B:B:W297 7.49754158
145B:B:L300 6.8496
146B:B:K301 6.05595
147B:B:L308 9.18407
148B:B:H311 9.25667689
149B:B:L318 3.852586
150B:B:V327 3.2125486
151B:B:W332 11.0143729
152B:B:D333 8.4125489
153B:B:F335 7.4925484
154B:B:L336 4.682547
155B:B:K337 8.8175486
156B:B:I338 4.388545
157B:B:W339 7.31167689
158G:G:L19 3.17754189
159G:G:R27 8.228568
160G:G:I28 3.77404
161G:G:M38 4.245494
162G:G:Y40 9.74254116
163G:G:D48 7.23599
164G:G:L51 5.384596
165G:G:N59 5.5925449
166G:G:F61 5.035848
167R:R:F40 7.02405
168R:R:L41 4.2675406
169R:R:Y45 5.202517
170R:R:M63 5.8875416
171R:R:Q66 4.945414
172R:R:K67 4.23486
173R:R:R70 4.168516
174R:R:D74 6.164518
175R:R:Y76 5.99617
176R:R:R77 5.885418
177R:R:H79 9.878519
178R:R:L80 5.416519
179R:R:D84 6.672519
180R:R:F87 7.55429717
181R:R:V88 3.525406
182R:R:F93 8.42754126
183R:R:W102 9.913336129
184R:R:F104 7.286127
185R:R:L108 4.7485125
186R:R:H113 5.64506
187R:R:Y116 5.158516
188R:R:L120 4.534517
189R:R:Y121 5.78286717
190R:R:I126 4.31407
191R:R:F129 4.855615
192R:R:I130 5.32418
193R:R:R134 6.88167619
194R:R:Y135 7.57754228
195R:R:H140 6.32754226
196R:R:R148 7.755406
197R:R:L151 4.295414
198R:R:V156 5.386515
199R:R:V160 5.24517
200R:R:W161 10.7225419
201R:R:T168 4.695406
202R:R:D171 6.55404
203R:R:F174 7.0975414
204R:R:Y190 7.895614
205R:R:P191 4.9675415
206R:R:W195 6.364515
207R:R:F199 5.54167615
208R:R:Q200 6.25405
209R:R:H203 7.2275414
210R:R:I204 3.9075405
211R:R:P211 3.4325409
212R:R:Y219 7.37167618
213R:R:L226 2.8025408
214R:R:T241 5.315407
215R:R:L244 4.585417
216R:R:F248 7.0725419
217R:R:W252 6.5975819
218R:R:Y255 5.99571717
219R:R:Y256 8.01667618
220R:R:F276 4.6225401
221R:R:F292 9.7175417
222R:R:H294 8.9025419
223R:R:C295 5.61419
224R:R:N298 6.67419
225R:R:L301 2.4825407
226R:R:Y302 5.66286719
227R:R:F304 3.484516
228R:R:F309 7.282518
229W:W:?1 13.602510
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1B:B:C317 B:B:M61 24.14874.86NoYes076
2B:B:C317 B:B:S316 24.25393.44NoNo079
3B:B:S316 B:B:W332 24.35996.18NoYes099
4A:A:W258 B:B:W332 15.84973.75YesYes259
5A:A:N256 A:A:W258 27.882410.17YesYes285
6A:A:F259 A:A:N256 25.3564.83YesYes298
7A:A:F259 A:A:I221 25.48968.79YesYes298
8A:A:I221 A:A:I264 29.92692.94YesNo086
9A:A:F250 A:A:I264 30.01923.77YesNo096
10A:A:F250 A:A:F307 65.576810.72YesYes098
11A:A:F307 A:A:M243 41.17183.73YesYes388
12A:A:I303 A:A:M243 49.89142.92YesYes378
13A:A:I303 A:A:L283 49.83464.28YesYes377
14A:A:L283 A:A:Y230 91.36885.86YesYes378
15A:A:K277 A:A:Y230 99.83597.17NoYes398
16A:A:K277 A:A:S228 1003.06NoNo399
17A:A:K270 A:A:S228 99.71366.12YesNo399
18A:A:E43 A:A:K270 99.7972.7YesYes099
19A:A:C224 A:A:E43 98.01794.56NoYes079
20A:A:C224 A:A:I49 96.58713.27NoYes077
21A:A:I49 A:A:M198 29.25212.92YesYes777
22A:A:L36 A:A:M198 19.0284.24YesYes777
23A:A:L36 A:A:V34 18.59652.98YesYes775
24A:A:V339 A:A:V34 17.98518.02NoYes785
25A:A:I343 A:A:V339 44.72373.07YesNo078
26A:A:I343 A:A:N347 43.69664.25YesNo078
27A:A:N347 R:R:A137 43.31234.69NoNo088
28R:R:A137 R:R:R148 42.92816.91NoYes086
29A:A:F307 A:A:M247 41.62358.71YesNo086
30A:A:M247 A:A:Y287 41.61388.38NoYes067
31A:A:L283 A:A:Y287 41.74157.03YesYes377
32A:A:I222 A:A:I49 67.24134.42YesYes777
33A:A:I222 A:A:L36 18.97882.85YesYes777
34A:A:F196 A:A:L36 19.24196.09YesYes777
35A:A:F196 A:A:V339 27.12423.93YesNo778
36A:A:F189 A:A:M198 10.11257.46YesYes097
37A:A:I253 A:A:R208 17.47813.76NoYes089
38A:A:A41 A:A:L249 34.99223.15NoNo079
39A:A:L249 A:A:R208 52.32883.64NoYes099
40A:A:A41 A:A:S246 35.20343.42NoNo079
41B:B:G162 B:B:Y145 18.41298.69NoYes298
42B:B:G162 B:B:S161 18.12373.71NoNo299
43A:A:W211 B:B:Y145 71.35325.79YesYes298
44A:A:K210 B:B:Y145 32.52113.58YesYes298
45A:A:K210 B:B:D246 30.15795.53YesYes299
46A:A:I222 A:A:I265 48.32614.42YesYes078
47A:A:F223 A:A:L249 17.50767.31NoNo099
48A:A:F223 A:A:I253 17.57216.28NoNo098
49A:A:S246 A:A:V225 17.69334.85NoYes397
50A:A:A338 A:A:I265 48.42713.25NoYes068
51A:A:A338 A:A:Y320 48.36128.01NoYes067
52A:A:D341 A:A:Y320 46.89389.2NoYes1487
53A:A:D341 R:R:K234 46.86016.91NoNo087
54R:R:K234 R:R:L226 46.66222.82NoYes078
55A:A:L348 R:R:L226 17.23532.77YesYes098
56A:A:L348 A:A:L353 17.26654.15YesNo097
57R:R:I222 R:R:L226 28.95972.85NoYes088
58R:R:L78 W:W:?1 17.713613.92NoYes150
59R:R:H79 R:R:V156 11.20759.69YesYes195
60R:R:V156 R:R:Y76 25.70253.79YesYes157
61R:R:D133 R:R:Y76 35.414710.34NoYes087
62R:R:D133 R:R:R148 35.799214.29NoYes086
63R:R:V156 R:R:Y157 10.0096.31YesNo157
64A:A:L353 R:R:R134 17.17119.72NoYes079
65R:R:I222 R:R:T241 28.82013.04NoYes087
66B:B:D246 B:B:S227 29.88195.89YesNo096
67B:B:D247 B:B:S227 29.58552.94YesNo096
68B:B:D247 B:B:H225 26.89877.56YesYes699
69B:B:H225 B:B:T243 25.41228.21YesYes698
70B:B:F253 B:B:T243 17.94097.78YesYes668
71B:B:F222 B:B:F253 17.054710.72NoYes686
72B:B:F222 B:B:Q220 16.76257.03NoYes687
73B:B:D258 B:B:Q220 11.094611.75YesYes677
74B:B:I18 G:G:A23 11.6983.25NoNo078
75B:B:Q17 G:G:A23 10.79853.03NoNo048
76B:B:D290 B:B:R314 12.402523.82YesNo068
77B:B:S147 B:B:Y145 23.743.82NoYes098
78B:B:S147 B:B:S160 23.44584.89NoYes096
79B:B:H142 B:B:S161 13.350113.95YesNo299
80B:B:H142 B:B:W169 10.39496.35YesYes298
81B:B:S160 B:B:V187 10.74686.46YesYes569
82R:R:R134 R:R:Y302 16.34497.2YesYes199
83R:R:L80 R:R:Y302 16.36013.52YesYes199
84R:R:D84 R:R:L80 16.42644.07YesYes199
85R:R:C295 R:R:D84 25.594.67YesYes199
86R:R:C295 R:R:F87 22.57886.98YesYes197
87R:R:T241 R:R:Y219 28.85186.24YesYes078
88R:R:Y219 R:R:Y302 16.34532.98YesYes189
89R:R:N298 R:R:Y302 16.34183.49YesYes199
90R:R:D84 R:R:N298 16.18988.08YesYes199
91R:R:S131 R:R:Y219 12.11213.99NoYes098
92R:R:I215 R:R:S131 11.8717.74NoNo079
93R:R:F248 R:R:I215 11.78827.54YesNo097
94R:R:F248 R:R:W252 11.39747.02YesYes199
95R:R:F87 R:R:Y116 13.85776.19YesYes176
96R:R:W94 R:R:Y116 16.10275.79NoYes176
97R:R:H113 R:R:W94 15.69329.52YesNo067
98A:A:F223 A:A:F250 35.105113.93NoYes099
99A:A:F307 A:A:S246 17.61653.96YesNo389
100A:A:R208 A:A:W211 68.8664YesYes299
101A:A:W258 B:B:R314 11.75265YesNo258
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:M63 R:R:R70 6.2 1 Yes Yes 6 6 2 2
R:R:L78 R:R:M63 2.83 1 No Yes 5 6 1 2
R:R:L78 R:R:R70 6.07 1 No Yes 5 6 1 2
R:R:L78 W:W:?1 13.92 1 No Yes 5 0 1 0
R:R:H79 R:R:I126 3.98 1 Yes Yes 9 7 1 2
R:R:H79 R:R:V156 9.69 1 Yes Yes 9 5 1 2
R:R:H79 R:R:Y157 7.62 1 Yes No 9 7 1 1
R:R:H79 R:R:W161 7.41 1 Yes Yes 9 9 1 1
R:R:H79 W:W:?1 20.69 1 Yes Yes 9 0 1 0
R:R:V82 W:W:?1 4.5 0 No Yes 5 0 1 0
R:R:S122 R:R:W161 8.65 0 No Yes 7 9 2 1
R:R:I126 R:R:V160 4.61 0 Yes Yes 7 7 2 2
R:R:V156 R:R:Y157 6.31 1 Yes No 5 7 2 1
R:R:V156 R:R:V160 3.21 1 Yes Yes 5 7 2 2
R:R:Y157 W:W:?1 9.43 1 No Yes 7 0 1 0
R:R:V160 R:R:W161 7.36 1 Yes Yes 7 9 2 1
R:R:W161 W:W:?1 19.47 1 Yes Yes 9 0 1 0

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

ShowSimilarityNetwork TypeNameLigandDescription
71.43Single8U4OCholesterol8U4O-CXCR4-CXCL12-Cholesterol-Gi1/β1/γ2
62.50Single8U4QCholesterol8U4Q-CXCR4-REGN7663-Fab-Cholesterol-Gi1/β1/γ2
57.14Single8U4PCholesterol8U4P-CXCR4-AMD3100-Cholesterol-Gi1/β1/γ2
50.00Single8U4RCholesterol8U4R-CXCR4-REGN7663-Fab-Cholesterol
37.50Single8T3O2Y58T3O-FFA4-TUG-891-2Y5-chim(NtGi2L-Gs-CtGq)/β1/γ2
22.22Single6KQIOrg275696KQI-CB1-CP55940-Org27569
8.33Single5NDZAZ3451; Na5NDZ-PAR2-AZ3451; Na
8.33Single8IKHQ2L8IKH-CB1-Q2L-Gi1/β1/γ1
7.69Single8G2YLPC8G2Y-ADGRF1-LPC-chim(Gs-CtGq)/β1/γ2
7.69Single8G94CD698G94-S1P1-CD69-Gi1/β1/γ2
7.14Single7WU3K6G7WU3-ADGRF1-K6G-Gs/β1/γ2
6.25Single7WU5K6G7WU5-ADGRF1-K6G-Gi1/β1/γ2
5.88Single7WU4K6G7WU4-ADGRF1-K6G-Gi1/β1/γ2

PDB Summary
PDB 8U4N
Class A
SubFamily Protein
Type Chemokine
SubType CXCR4
Species Homo Sapiens
Ligand -
Other Ligand(s) Cholesterol
Protein Partners Gi1/Beta1/Gamma2
PDB Resolution 2.72
Date 2024-03-13
D.O.I. 10.1101/2024.02.09.579708
Net Summary
Imin 2.77
Number of Linked Nodes 854
Number of Links 1146
Number of Hubs 229
Number of Links mediated by Hubs 798
Number of Communities 22
Number of Nodes involved in Communities 312
Number of Links involved in Communities 505
Path Summary
Number Of Nodes in MetaPath 102
Number Of Links MetaPath 101
Number of Shortest Paths 5048817
Length Of Smallest Path 3
Average Path Length 35.9838
Length of Longest Path 61
Minimum Path Strength 1.28
Average Path Strength 5.86603
Maximum Path Strength 23.7267
Minimum Path Correlation 0.7
Average Path Correlation 0.991969
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 2.32558
Average % Of Corr. Nodes 32.9037
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 62.9792
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• D2 dopamine receptor binding   • protein binding   • binding   • signaling receptor binding   • G protein-coupled receptor binding   • dopamine receptor binding   • phosphorus-oxygen lyase activity   • enzyme regulator activity   • cyclase regulator activity   • molecular function regulator activity   • cyclase activity   • adenylate cyclase regulator activity   • lyase activity   • catalytic activity   • adenylate cyclase activity   • guanyl nucleotide binding   • GTP binding   • nucleotide binding   • guanyl ribonucleotide binding   • purine ribonucleotide binding   • purine ribonucleoside triphosphate binding   • nucleoside phosphate binding   • ion binding   • purine nucleotide binding   • anion binding   • heterocyclic compound binding   • carbohydrate derivative binding   • ribonucleotide binding   • small molecule binding   • cation binding   • magnesium ion binding   • metal ion binding   • GDP binding   • G protein-coupled serotonin receptor binding   • protein-containing complex binding   • G-protein beta/gamma-subunit complex binding   • pyrophosphatase activity   • GTPase activity   • G protein activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • adenylate cyclase-inhibiting serotonin receptor signaling pathway   • G protein-coupled serotonin receptor signaling pathway   • cell communication   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction
Gene OntologyBiological Process• cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • adenylate cyclase-inhibiting serotonin receptor signaling pathway   • G protein-coupled serotonin receptor signaling pathway   • cell communication   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • response to hormone   • response to chemical   • response to endogenous stimulus   • response to peptide hormone   • response to oxygen-containing compound   • response to nitrogen compound   • cell division   • leukocyte migration   • immune system process   • mononuclear cell migration   • lymphocyte migration   • cell migration   • T cell migration   • cell motility   • regulation of steroid biosynthetic process   • regulation of cholesterol biosynthetic process   • regulation of cholesterol metabolic process   • steroid metabolic process   • regulation of lipid metabolic process   • sterol metabolic process   • positive regulation of biological process   • cholesterol metabolic process   • lipid biosynthetic process   • alcohol metabolic process   • regulation of primary metabolic process   • positive regulation of metabolic process   • regulation of small molecule metabolic process   • positive regulation of biosynthetic process   • positive regulation of lipid metabolic process   • small molecule metabolic process   • steroid biosynthetic process   • positive regulation of cellular process   • regulation of biosynthetic process   • secondary alcohol biosynthetic process   • regulation of alcohol biosynthetic process   • small molecule biosynthetic process   • regulation of steroid metabolic process   • cholesterol biosynthetic process   • positive regulation of cholesterol biosynthetic process   • primary metabolic process   • secondary alcohol metabolic process   • positive regulation of steroid biosynthetic process   • biosynthetic process   • sterol biosynthetic process   • positive regulation of lipid biosynthetic process   • regulation of sterol biosynthetic process   • alcohol biosynthetic process   • positive regulation of cholesterol metabolic process   • positive regulation of steroid metabolic process   • metabolic process   • regulation of lipid biosynthetic process   • positive regulation of small molecule metabolic process   • regulation of metabolic process   • positive regulation of alcohol biosynthetic process   • positive regulation of sterol biosynthetic process   • lipid metabolic process   • regulation of cytoskeleton organization   • regulation of cellular component organization   • microtubule cytoskeleton organization   • regulation of mitotic spindle organization   • mitotic cell cycle   • cellular component organization   • cell cycle   • cellular component organization or biogenesis   • regulation of cell cycle   • microtubule cytoskeleton organization involved in mitosis   • spindle organization   • cell cycle process   • regulation of cell cycle process   • regulation of microtubule-based process   • regulation of spindle organization   • regulation of organelle organization   • mitotic spindle organization   • organelle organization   • mitotic cell cycle process   • microtubule-based process   • cytoskeleton organization   • regulation of microtubule cytoskeleton organization   • protein localization   • positive regulation of protein localization to cell periphery   • regulation of localization   • protein localization to cell periphery   • cellular localization   • regulation of protein localization   • positive regulation of protein localization to cell cortex   • regulation of protein localization to cell periphery   • localization   • regulation of cellular localization   • regulation of protein localization to cell cortex   • cellular macromolecule localization   • macromolecule localization   • positive regulation of protein localization   • protein localization to cell cortex   • response to ketone   • response to prostaglandin   • response to lipid   • response to alcohol   • response to prostaglandin E   • cellular response to forskolin   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to alcohol   • response to forskolin   • cellular response to lipid   • cellular response to ketone   • midbody   • cellular anatomical structure   • membrane-bounded organelle   • intracellular anatomical structure   • nucleus   • membrane-enclosed lumen   • intracellular membraneless organelle   • intracellular membrane-bounded organelle   • nucleolus   • intracellular organelle lumen   • intracellular organelle   • organelle lumen   • organelle   • membraneless organelle
Gene OntologyCellular Component• midbody   • cellular anatomical structure   • membrane-bounded organelle   • intracellular anatomical structure   • nucleus   • membrane-enclosed lumen   • intracellular membraneless organelle   • intracellular membrane-bounded organelle   • nucleolus   • intracellular organelle lumen   • intracellular organelle   • organelle lumen   • organelle   • membraneless organelle   • nuclear lumen   • cell periphery   • cell cortex   • cytoplasm   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane   • plasma membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • extracellular exosome   • extracellular vesicle   • extracellular organelle   • extracellular region   • extracellular space   • vesicle   • extracellular membrane-bounded organelle   • centrosome   • microtubule organizing center   • cytoskeleton   • microtubule cytoskeleton   • centriolar satellite   • cytosol   • nucleoplasm   • vacuolar membrane   • lytic vacuole   • vacuole   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • organelle membrane   • lysosome   • Golgi apparatus   • endomembrane system   • cilium   • plasma membrane bounded cell projection   • ciliary basal body   • cell projection   • protein binding   • binding   • enzyme binding   • GTPase binding   • protein-containing complex binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • cell population proliferation   • cellular process   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • signal transduction   • cell communication   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • response to oxygen-containing compound   • cellular response to oxygen-containing compound   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to chemical stimulus   • cellular response to alcohol   • response to hormone   • response to chemical   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • phospholipase C-activating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to monoamine stimulus   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • synaptic signaling   • cellular response to acetylcholine   • cell-cell signaling   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • non-motile cilium   • 9+0 non-motile cilium   • neuron projection   • photoreceptor disc membrane   • photoreceptor outer segment   • photoreceptor cell cilium   • synapse   • cell junction   • G-protein beta-subunit binding   • fibroblast proliferation   • molecular transducer activity   • coreceptor activity   • signaling receptor activity   • cytoskeletal protein binding   • myosin light chain binding   • myosin binding   • small molecule binding   • C-C chemokine binding   • chemokine binding   • cytokine binding   • G protein-coupled chemoattractant receptor activity   • C-X-C motif chemokine 12 receptor activity   • C-X-C chemokine receptor activity   • chemokine receptor activity   • G protein-coupled receptor activity   • transmembrane signaling receptor activity   • cytokine receptor activity   • immune receptor activity   • ubiquitin protein ligase binding   • ubiquitin-like protein ligase binding   • virus receptor activity   • exogenous protein binding   • C-C chemokine receptor activity   • ubiquitin binding   • ubiquitin-like protein binding   • actin binding   • bioluminescence   • metabolic process   • generation of precursor metabolites and energy   • head development   • central nervous system development   • brain development   • nervous system development   • cell adhesion   • regulation of cell adhesion   • neuron recognition   • cellular developmental process   • cell development   • generation of neurons   • neurogenesis   • neuron differentiation   • cell differentiation   • neuron development   • cell recognition   • regulation of calcium ion transport   • regulation of localization   • transport   • regulation of transport   • regulation of monoatomic ion transport   • establishment of localization   • metal ion transport   • calcium ion transport   • localization   • monoatomic ion transport   • regulation of metal ion transport   • monoatomic cation transport   • response to mechanical stimulus   • response to abiotic stimulus   • response to external stimulus   • response to ultrasound   • chemotaxis   • positive regulation of locomotion   • regulation of response to external stimulus   • positive regulation of biological process   • regulation of chemotaxis   • positive regulation of chemotaxis   • positive regulation of response to stimulus   • positive regulation of response to external stimulus   • taxis   • regulation of response to stimulus   • regulation of locomotion   • locomotion   • forebrain development   • telencephalon cell migration   • forebrain cell migration   • cell migration   • telencephalon development   • cell motility   • apoptotic process   • cell death   • programmed cell death   • epithelium development   • endothelium development   • tube development   • morphogenesis of an endothelium   • endothelial tube morphogenesis   • morphogenesis of an epithelium   • tissue development   • tissue morphogenesis   • anatomical structure morphogenesis   • tube morphogenesis   • epithelial tube morphogenesis   • regulation of viral process   • viral process   • membrane organization   • cellular component organization   • myelination   • myelin maintenance   • axon ensheathment   • ensheathment of neurons   • plasma membrane organization   • cellular component organization or biogenesis   • endomembrane system organization   • cell chemotaxis   • dendritic cell chemotaxis   • leukocyte migration   • dendritic cell migration   • immune system process   • mononuclear cell migration   • leukocyte chemotaxis   • detection of external stimulus   • detection of stimulus involved in sensory perception of pain   • sensory perception of temperature stimulus   • sensory perception of pain   • detection of temperature stimulus involved in sensory perception   • response to temperature stimulus   • detection of abiotic stimulus   • detection of stimulus   • detection of temperature stimulus   • detection of stimulus involved in sensory perception   • detection of temperature stimulus involved in sensory perception of pain   • response to decreased oxygen levels   • response to hypoxia   • response to stress   • response to oxygen levels   • cellular response to xenobiotic stimulus   • response to xenobiotic stimulus   • epithelial cell development   • epithelial cell differentiation   • regulation of growth   • developmental growth   • cell projection organization   • neuron projection development   • regulation of cell morphogenesis   • positive regulation of developmental process   • cell projection morphogenesis   • neuron projection morphogenesis   • positive regulation of developmental growth   • developmental growth involved in morphogenesis   • positive regulation of dendrite extension   • regulation of cellular component organization   • regulation of developmental process   • plasma membrane bounded cell projection morphogenesis   • cell growth   • cell morphogenesis   • dendrite extension   • positive regulation of cellular process   • regulation of anatomical structure morphogenesis   • neuron projection extension   • regulation of developmental growth   • plasma membrane bounded cell projection organization   • developmental cell growth   • growth   • regulation of dendrite extension   • positive regulation of cell growth   • regulation of cell growth   • positive regulation of growth   • positive regulation of cytosolic calcium ion concentration   • regulation of biological quality   • detection of mechanical stimulus involved in sensory perception of pain   • detection of mechanical stimulus involved in sensory perception   • sensory perception of mechanical stimulus   • detection of mechanical stimulus   • immune response   • cell surface receptor signaling pathway   • chemokine (C-X-C motif) ligand 12 signaling pathway   • CXCL12-activated CXCR4 signaling pathway   • response to cytokine   • response to chemokine   • cytokine-mediated signaling pathway   • cellular response to chemokine   • chemokine-mediated signaling pathway   • response to peptide   • cellular response to cytokine stimulus   • C-X-C chemokine receptor CXCR4 signaling pathway   • response to activity   • regulation of cell motility   • positive regulation of mesenchymal stem cell migration   • positive regulation of cell migration   • regulation of mesenchymal stem cell migration   • mesenchymal stem cell migration   • positive regulation of cell motility   • regulation of cell migration   • calcium-mediated signaling   • endothelial cell differentiation   • angiogenesis   • regulation of vasculature development   • regulation of response to wounding   • positive regulation of vascular wound healing   • vascular wound healing   • regulation of response to stress   • regulation of multicellular organismal process   • response to wounding   • blood vessel development   • positive regulation of response to wounding   • wound healing   • regulation of multicellular organismal development   • blood vessel morphogenesis   • angiogenesis involved in wound healing   • positive regulation of angiogenesis   • vasculature development   • circulatory system development   • positive regulation of vasculature development   • positive regulation of wound healing   • regulation of angiogenesis   • regulation of wound healing   • anatomical structure formation involved in morphogenesis   • positive regulation of multicellular organismal process   • regulation of vascular wound healing   • positive regulation of cell communication   • positive regulation of signal transduction   • regulation of signal transduction   • positive regulation of macrophage migration inhibitory factor signaling pathway   • positive regulation of response to cytokine stimulus   • macrophage migration inhibitory factor signaling pathway   • regulation of signaling   • regulation of macrophage migration inhibitory factor signaling pathway   • regulation of cytokine-mediated signaling pathway   • regulation of response to cytokine stimulus   • regulation of cell communication   • positive regulation of cytokine-mediated signaling pathway   • positive regulation of signaling   • homeostatic process   • adaptive thermogenesis   • positive regulation of metabolic process   • multicellular organismal-level homeostasis   • regulation of cold-induced thermogenesis   • cold-induced thermogenesis   • temperature homeostasis   • positive regulation of cold-induced thermogenesis   • regulation of metabolic process   • regulation of programmed cell death   • response to tacrolimus   • heart process   • circulatory system process   • cardiac muscle contraction   • heart contraction   • muscle contraction   • muscle system process   • blood circulation   • striated muscle contraction   • biological process involved in interspecies interaction between organisms   • response to other organism   • response to external biotic stimulus   • response to virus   • response to biotic stimulus   • defense response   • inflammatory response   • neuron migration   • positive regulation of nervous system development   • regulation of neurogenesis   • regulation of cell differentiation   • regulation of gliogenesis   • positive regulation of gliogenesis   • regulation of cell development   • regulation of nervous system development   • gliogenesis   • positive regulation of cell differentiation   • positive regulation of neurogenesis   • positive regulation of oligodendrocyte differentiation   • positive regulation of cell development   • regulation of glial cell differentiation   • positive regulation of glial cell differentiation   • oligodendrocyte differentiation   • glial cell differentiation   • regulation of oligodendrocyte differentiation   • cell surface   • external side of plasma membrane   • cell leading edge   • anchoring junction   • cytoplasmic vesicle   • intracellular vesicle   • early endosome   • endosome   • late endosome
SCOP2Domain Identifier• Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like
SCOP2Family Identifier• Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeCLR
PDB ResiduesW:W:?1
Environment DetailsOpen EMBL-EBI Page
CodeCLR
NameCholesterol
Synonyms
  • Cholesterin
  • Cholesterol
  • Cholest-5-en-3beta-ol
  • (3β,14β,17α)-cholest-5-en-3-ol
Identifier
FormulaC27 H46 O
Molecular Weight386.654
SMILES
PubChem5997
Formal Charge0
Total Atoms74
Total Chiral Atoms8
Total Bonds77
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainA
ProteinG Protein α Sub unit
UniProtP63096
Sequence
>8U4N_Chain_A
SAEDKAAVE RSKMIDRNL REDGEKAAR EVKLLLLGA GESGKCTIV 
KQMTGIVET HFTFKDLHF KMFDVTAQR SERKKWIHC FEGVTAIIF 
CVALSDYDL VLAEDEEMN RMHASMKLF DSICNNKWF TDTSIILFL 
NKKDLFEEK IKKSPLTIC YPEYAGSNT YEEAAAYIQ CQFEDLNKR 
KDTKEIYTH FTCSTDTKN VQFVFDAVT DVIIKNNLK DCGLF


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

ChainB
ProteinG Protein β Sub unit
UniProtP62873
Sequence
>8U4N_Chain_B
QLRQEAEQL KNQIRDARK ACADATLSQ ITNNIDPVG RIQMRTRRT 
LRGHLAKIY AMHWGTDSR LLVSASQDG KLIIWDSYT TNKVHAIPL 
RSSWVMTCA YAPSGNYVA CGGLDNICS IYNLKTREG NVRVSRELA 
GHTGYLSCC RFLDDNQIV TSSGDTTCA LWDIETGQQ TTTFTGHTG 
DVMSLSLAP DTRLFVSGA CDASAKLWD VREGMCRQT FTGHESDIN 
AICFFPNGN AFATGSDDA TCRLFDLRA DQELMTYSH DNIICGITS 
VSFSKSGRL LLAGYDDFN CNVWDALKA DRAGVLAGH DNRVSCLGV 
TDDGMAVAT GSWDSFLKI WN


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

ChainG
ProteinG Protein γ Sub unit
UniProtP59768
Sequence
>8U4N_Chain_G
ARKLVEQLK MEANIDRIK VSKAAADLM AYCEAHAKE DPLLTPVPA 
SENPF


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

ChainR
ProteinReceptor
UniProtP61073
Sequence
>8U4N_Chain_R
FNKIFLPTI YSIIFLTGI VGNGLVILV MGYQKKLRS MTDKYRLHL 
SVADLLFVI TLPFWAVDA VANWYFGNF LCKAVHVIY TVSLYSSVL 
ILAFISLDR YLAIVHATN SQRPRKLLA EKVVYVGVW IPALLLTIP 
DFIFANVSE ADDRYICDR FYPNDLWVV VFQFQHIMV GLILPGIVI 
LSCYCIIIS KLSHSKGHQ KRKALKTTV ILILAFFAC WLPYYIGIS 
IDSFILLEI IKQGCEFEN TVHKWISIT EALAFFHCC LNPILYAFL 
GAKFKTSAQ HALT


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8YU7AProteinChemokineCXCR4Homo sapiens---3.012025-03-0510.1016/j.celrep.2025.115255
8YU7 (Multimeric) AProteinChemokineCXCR4Homo sapiens--3.012025-03-0510.1016/j.celrep.2025.115255
8K3ZAProteinChemokineCXCR4Homo sapiensCXCL12-Gi1/β1/γ12.812024-07-17To be published
8K3Z (No Gprot) AProteinChemokineCXCR4Homo sapiensCXCL12-2.812024-07-17To be published
8U4TAProteinChemokineCXCR4Homo sapiensREGN7663-Fab--3.382024-03-13doi.org/10.1038/s41594-024-01397-1
8U4T (Multimeric) AProteinChemokineCXCR4Homo sapiensREGN7663-Fab-3.382024-03-13doi.org/10.1038/s41594-024-01397-1
8U4SAProteinChemokineCXCR4Homo sapiensREGN7663-Fab--3.352024-03-13doi.org/10.1038/s41594-024-01397-1
8U4S (Multimeric) AProteinChemokineCXCR4Homo sapiensREGN7663-Fab-3.352024-03-13doi.org/10.1038/s41594-024-01397-1
8U4RAProteinChemokineCXCR4Homo sapiensREGN7663-FabCholesterol-3.12024-03-1310.1101/2024.02.09.579708
8U4QAProteinChemokineCXCR4Homo sapiensREGN7663-FabCholesterolGi1/β1/γ23.362024-03-1310.1101/2024.02.09.579708
8U4Q (No Gprot) AProteinChemokineCXCR4Homo sapiensREGN7663-FabCholesterol3.362024-03-1310.1101/2024.02.09.579708
8U4PAProteinChemokineCXCR4Homo sapiensAMD3100CholesterolGi1/β1/γ23.152024-03-1310.1101/2024.02.09.579708
8U4P (No Gprot) AProteinChemokineCXCR4Homo sapiensAMD3100Cholesterol3.152024-03-1310.1101/2024.02.09.579708
8U4OAProteinChemokineCXCR4Homo sapiensCXCL12CholesterolGi1/β1/γ23.292024-03-1310.1101/2024.02.09.579708
8U4O (No Gprot) AProteinChemokineCXCR4Homo sapiensCXCL12Cholesterol3.292024-03-1310.1101/2024.02.09.579708
8U4NAProteinChemokineCXCR4Homo sapiens-CholesterolGi1/β1/γ22.722024-03-1310.1101/2024.02.09.579708
8U4N (No Gprot) AProteinChemokineCXCR4Homo sapiens-Cholesterol2.722024-03-1310.1101/2024.02.09.579708
8ZPNAProteinChemokineCXCR4Homo sapiensAMD3100Cholesterol-3.312025-02-26To be published
8ZPMAProteinChemokineCXCR4Homo sapiensAMD070Cholesterol-3.22025-02-26To be published
8ZPLAProteinChemokineCXCR4Homo sapiensHF51116Cholesterol-3.012025-02-26To be published
4RWSAProteinChemokineCXCR4Homo sapiensvMIP-II--3.12015-02-1110.1126/science.1261064
3OE9AProteinChemokineCXCR4Homo sapiensIT1t--3.12010-10-2710.1126/science.1194396
3OE9 (Multimeric) AProteinChemokineCXCR4Homo sapiensIT1t-3.12010-10-2710.1126/science.1194396
3OE8AProteinChemokineCXCR4Homo sapiensIT1t--3.12010-10-2710.1126/science.1194396
3OE8 (Multimeric) AProteinChemokineCXCR4Homo sapiensIT1t-3.12010-10-2710.1126/science.1194396
3OE6AProteinChemokineCXCR4Homo sapiensIT1t--3.22010-10-2710.1126/science.1194396
3OE0AProteinChemokineCXCR4Homo sapiensCVX15--2.92010-10-2710.1126/science.1194396
3ODUAProteinChemokineCXCR4Homo sapiensIT1t--2.52010-10-2710.1126/science.1194396
3ODU (Multimeric) AProteinChemokineCXCR4Homo sapiensIT1t-2.52010-10-2710.1126/science.1194396




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8U4N.zip



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