Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:L41 3.35406
2R:R:F49 4.31406
3R:R:N56 5.49409
4R:R:D74 4.998508
5R:R:Y76 6.615407
6R:R:H79 8.455449
7R:R:L80 5.142529
8R:R:F87 7.60333617
9R:R:F93 5.26436
10R:R:W102 6.516539
11R:R:F104 6.932537
12R:R:H113 5.384506
13R:R:Y116 4.68516
14R:R:Y121 5.20667617
15R:R:R148 6.5325406
16R:R:V160 5.725407
17R:R:W161 7.8575449
18R:R:Y190 8.47514
19R:R:W195 5.3825415
20R:R:F199 7.795415
21R:R:Q202 5.0775413
22R:R:Y219 4.665608
23R:R:F248 5.01459
24R:R:F249 4.6875454
25R:R:W252 6.506509
26R:R:Y256 7.66408
27R:R:V280 3.2875405
28R:R:I284 5.8675414
29R:R:F292 6.364517
30R:R:F293 5.73405
31R:R:L301 2.4825407
32R:R:Y302 6.2775429
33R:R:F309 7.1775408
34W:W:?1 10.6033640
35L:L:?1 12.4312810
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:F40 R:R:I44 10.99665.02NoNo055
2R:R:I44 R:R:I48 12.82682.94NoNo057
3R:R:I48 R:R:L91 30.5652.85NoNo078
4R:R:F292 R:R:L91 37.21932.44YesNo078
5R:R:F292 R:R:Y45 14.88266.19YesNo077
6R:R:L41 R:R:Y45 11.22224.69YesNo067
7R:R:F293 R:R:I48 16.651315.07YesNo057
8R:R:C296 R:R:F293 11.19144.19NoYes075
9R:R:D84 R:R:N56 10.20716.73NoYes099
10R:R:D84 R:R:L80 11.39144.07NoYes299
11R:R:L80 R:R:Y302 48.56453.52YesYes299
12R:R:R134 R:R:Y302 48.87736.17NoYes299
13R:R:R134 R:R:Y219 92.47417.2NoYes098
14R:R:S131 R:R:Y219 98.21595.09NoYes098
15R:R:I215 R:R:S131 98.89266.19NoNo079
16R:R:F248 R:R:I215 99.09775.02YesNo097
17R:R:F248 R:R:W252 1006.01YesYes099
18R:R:H294 R:R:W252 85.440410.58NoYes099
19R:R:F87 R:R:H294 85.481413.58YesNo079
20R:R:F292 R:R:F87 32.48238.57YesYes177
21R:R:F309 R:R:R77 14.36486.41YesNo088
22R:R:D74 R:R:R77 18.69683.57YesNo088
23R:R:D74 R:R:R70 33.23084.76YesNo086
24R:R:R70 W:W:?1 35.01497.27NoYes060
25R:R:H79 W:W:?1 43.755817.95YesYes490
26R:R:H79 R:R:I126 26.8023.98YesNo097
27R:R:I126 R:R:L80 39.61355.71NoYes079
28R:R:H79 R:R:V156 28.51435.54YesNo095
29R:R:V156 R:R:Y76 29.26285.05NoYes057
30R:R:I130 R:R:Y76 43.67897.25NoYes087
31R:R:I130 R:R:R134 43.1566.26NoNo289
32R:R:D133 R:R:Y76 21.434411.49NoYes087
33R:R:D133 R:R:R148 20.286113.1NoYes086
34R:R:I126 R:R:V160 14.2524.61NoYes077
35R:R:F292 R:R:Y116 15.3444.13YesYes176
36R:R:F93 R:R:V112 15.8727.87YesNo065
37R:R:V112 R:R:W94 17.08194.9NoNo057
38L:L:?1 R:R:W94 53.798817.46YesNo007
39L:L:?1 R:R:Y116 65.95415.67YesYes106
40L:L:?1 R:R:E288 15.041519.24YesNo005
41R:R:E288 R:R:F292 20.20410.49NoYes057
42R:R:H113 R:R:W94 36.59396.35YesNo067
43R:R:C109 R:R:H113 21.54725.9NoYes096
44R:R:D97 R:R:W102 14.09315.58NoYes059
45R:R:D97 R:R:N101 11.22731.35NoNo054
46R:R:C109 R:R:C186 10.40197.28NoNo399
47R:R:D171 R:R:H113 15.2627.56NoYes046
48R:R:L120 R:R:Y121 12.9143.52NoYes177
49R:R:Q202 R:R:Y121 20.23994.51YesYes137
50R:R:H203 R:R:Y121 16.74878.71NoYes047
51R:R:L136 R:R:R148 15.44653.64NoYes056
52R:R:L136 R:R:S144 14.2113NoNo055
53R:R:H140 R:R:S144 12.96522.79NoNo065
54R:R:F199 R:R:Q202 19.96313.51YesYes153
55R:R:W252 R:R:Y256 18.83019.65YesYes098
56R:R:L244 R:R:Y219 11.11454.69NoYes078
57L:L:?1 R:R:I284 23.772212.67YesYes104
58R:R:E288 R:R:Y255 12.585910.1NoNo057
59R:R:F276 R:R:V280 10.89413.93NoYes015
60R:R:I284 R:R:V280 15.19023.07YesYes045
61R:R:F87 R:R:Y116 52.88125.16YesYes176
62R:R:H203 R:R:Y256 16.56938.71NoYes048
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:F87 R:R:Y116 5.16 1 Yes Yes 7 6 2 1
R:R:F87 R:R:L120 4.87 1 Yes No 7 7 2 2
R:R:F292 R:R:F87 8.57 1 Yes Yes 7 7 2 2
R:R:T90 R:R:Y116 3.75 0 No Yes 6 6 2 1
R:R:V112 R:R:W94 4.9 0 No No 5 7 2 1
R:R:H113 R:R:W94 6.35 0 Yes No 6 7 2 1
L:L:?1 R:R:W94 17.46 1 Yes No 0 7 0 1
R:R:L120 R:R:Y116 4.69 1 No Yes 7 6 2 1
R:R:F292 R:R:Y116 4.13 1 Yes Yes 7 6 2 1
L:L:?1 R:R:Y116 5.67 1 Yes Yes 0 6 0 1
R:R:D193 R:R:L266 9.5 0 No No 1 3 2 1
R:R:L266 R:R:V197 4.47 0 No No 3 3 1 2
R:R:D262 R:R:Q200 5.22 1 No No 5 5 1 2
R:R:E288 R:R:Y255 10.1 0 No No 5 7 1 2
R:R:G258 R:R:I284 3.53 0 No Yes 4 4 2 1
R:R:D262 R:R:I284 4.2 1 No Yes 5 4 1 1
L:L:?1 R:R:D262 24.09 1 Yes No 0 5 0 1
L:L:?1 R:R:L266 5.58 1 Yes No 0 3 0 1
L:L:?1 R:R:E277 7.48 1 Yes No 0 2 0 1
L:L:?1 R:R:H281 7.26 1 Yes No 0 4 0 1
L:L:?1 R:R:I284 12.67 1 Yes Yes 0 4 0 1
R:R:E288 R:R:F292 10.49 0 No Yes 5 7 1 2
L:L:?1 R:R:E288 19.24 1 Yes No 0 5 0 1
R:R:I284 R:R:V280 3.07 1 Yes Yes 4 5 1 2
R:R:H281 R:R:S285 2.79 0 No No 4 5 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:D74 R:R:R70 4.76 0 Yes No 8 6 2 1
R:R:R70 W:W:?1 7.27 0 No Yes 6 0 1 0
R:R:E153 R:R:K75 13.5 0 No No 7 6 2 1
R:R:K75 W:W:?1 5.62 0 No Yes 6 0 1 0
R:R:L78 W:W:?1 9.66 0 No Yes 5 0 1 0
R:R:H79 R:R:I126 3.98 4 Yes No 9 7 1 2
R:R:H79 R:R:V156 5.54 4 Yes No 9 5 1 2
R:R:H79 R:R:W161 6.35 4 Yes Yes 9 9 1 1
R:R:H79 W:W:?1 17.95 4 Yes Yes 9 0 1 0
R:R:S122 R:R:W161 7.41 0 No Yes 7 9 2 1
R:R:I126 R:R:V160 4.61 0 No Yes 7 7 2 2
R:R:Y157 W:W:?1 14.03 0 No Yes 7 0 1 0
R:R:V160 R:R:W161 8.58 0 Yes Yes 7 9 2 1
R:R:W161 W:W:?1 9.09 4 Yes Yes 9 0 1 0

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8U4P_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.42
Number of Linked Nodes 263
Number of Links 277
Number of Hubs 35
Number of Links mediated by Hubs 139
Number of Communities 5
Number of Nodes involved in Communities 34
Number of Links involved in Communities 45
Path Summary
Number Of Nodes in MetaPath 63
Number Of Links MetaPath 62
Number of Shortest Paths 39516
Length Of Smallest Path 3
Average Path Length 13.8556
Length of Longest Path 30
Minimum Path Strength 1.405
Average Path Strength 6.64062
Maximum Path Strength 17.94
Minimum Path Correlation 0.7
Average Path Correlation 0.917388
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4
Average % Of Corr. Nodes 46.7089
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 44.6318
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• D2 dopamine receptor binding   • protein binding   • binding   • signaling receptor binding   • G protein-coupled receptor binding   • dopamine receptor binding   • phosphorus-oxygen lyase activity   • enzyme regulator activity   • cyclase regulator activity   • molecular function regulator activity   • cyclase activity   • adenylate cyclase regulator activity   • lyase activity   • catalytic activity   • adenylate cyclase activity   • guanyl nucleotide binding   • GTP binding   • nucleotide binding   • guanyl ribonucleotide binding   • purine ribonucleotide binding   • purine ribonucleoside triphosphate binding   • nucleoside phosphate binding   • ion binding   • purine nucleotide binding   • anion binding   • heterocyclic compound binding   • carbohydrate derivative binding   • ribonucleotide binding   • small molecule binding   • cation binding   • magnesium ion binding   • metal ion binding   • GDP binding   • G protein-coupled serotonin receptor binding   • protein-containing complex binding   • G-protein beta/gamma-subunit complex binding   • pyrophosphatase activity   • GTPase activity   • G protein activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • adenylate cyclase-inhibiting serotonin receptor signaling pathway   • G protein-coupled serotonin receptor signaling pathway   • cell communication   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction
Gene OntologyBiological Process• cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • adenylate cyclase-inhibiting serotonin receptor signaling pathway   • G protein-coupled serotonin receptor signaling pathway   • cell communication   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • response to hormone   • response to chemical   • response to endogenous stimulus   • response to peptide hormone   • response to oxygen-containing compound   • response to nitrogen compound   • cell division   • leukocyte migration   • immune system process   • mononuclear cell migration   • lymphocyte migration   • cell migration   • T cell migration   • cell motility   • regulation of steroid biosynthetic process   • regulation of cholesterol biosynthetic process   • regulation of cholesterol metabolic process   • steroid metabolic process   • regulation of lipid metabolic process   • sterol metabolic process   • positive regulation of biological process   • cholesterol metabolic process   • lipid biosynthetic process   • alcohol metabolic process   • regulation of primary metabolic process   • positive regulation of metabolic process   • regulation of small molecule metabolic process   • positive regulation of biosynthetic process   • positive regulation of lipid metabolic process   • small molecule metabolic process   • steroid biosynthetic process   • positive regulation of cellular process   • regulation of biosynthetic process   • secondary alcohol biosynthetic process   • regulation of alcohol biosynthetic process   • small molecule biosynthetic process   • regulation of steroid metabolic process   • cholesterol biosynthetic process   • positive regulation of cholesterol biosynthetic process   • primary metabolic process   • secondary alcohol metabolic process   • positive regulation of steroid biosynthetic process   • biosynthetic process   • sterol biosynthetic process   • positive regulation of lipid biosynthetic process   • regulation of sterol biosynthetic process   • alcohol biosynthetic process   • positive regulation of cholesterol metabolic process   • positive regulation of steroid metabolic process   • metabolic process   • regulation of lipid biosynthetic process   • positive regulation of small molecule metabolic process   • regulation of metabolic process   • positive regulation of alcohol biosynthetic process   • positive regulation of sterol biosynthetic process   • lipid metabolic process   • regulation of cytoskeleton organization   • regulation of cellular component organization   • microtubule cytoskeleton organization   • regulation of mitotic spindle organization   • mitotic cell cycle   • cellular component organization   • cell cycle   • cellular component organization or biogenesis   • regulation of cell cycle   • microtubule cytoskeleton organization involved in mitosis   • spindle organization   • cell cycle process   • regulation of cell cycle process   • regulation of microtubule-based process   • regulation of spindle organization   • regulation of organelle organization   • mitotic spindle organization   • organelle organization   • mitotic cell cycle process   • microtubule-based process   • cytoskeleton organization   • regulation of microtubule cytoskeleton organization   • protein localization   • positive regulation of protein localization to cell periphery   • regulation of localization   • protein localization to cell periphery   • cellular localization   • regulation of protein localization   • positive regulation of protein localization to cell cortex   • regulation of protein localization to cell periphery   • localization   • regulation of cellular localization   • regulation of protein localization to cell cortex   • cellular macromolecule localization   • macromolecule localization   • positive regulation of protein localization   • protein localization to cell cortex   • response to ketone   • response to prostaglandin   • response to lipid   • response to alcohol   • response to prostaglandin E   • cellular response to forskolin   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to alcohol   • response to forskolin   • cellular response to lipid   • cellular response to ketone   • midbody   • cellular anatomical structure   • membrane-bounded organelle   • intracellular anatomical structure   • nucleus   • membrane-enclosed lumen   • intracellular membraneless organelle   • intracellular membrane-bounded organelle   • nucleolus   • intracellular organelle lumen   • intracellular organelle   • organelle lumen   • organelle   • membraneless organelle
Gene OntologyCellular Component• midbody   • cellular anatomical structure   • membrane-bounded organelle   • intracellular anatomical structure   • nucleus   • membrane-enclosed lumen   • intracellular membraneless organelle   • intracellular membrane-bounded organelle   • nucleolus   • intracellular organelle lumen   • intracellular organelle   • organelle lumen   • organelle   • membraneless organelle   • nuclear lumen   • cell periphery   • cell cortex   • cytoplasm   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane   • plasma membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • extracellular exosome   • extracellular vesicle   • extracellular organelle   • extracellular region   • extracellular space   • vesicle   • extracellular membrane-bounded organelle   • centrosome   • microtubule organizing center   • cytoskeleton   • microtubule cytoskeleton   • centriolar satellite   • cytosol   • nucleoplasm   • vacuolar membrane   • lytic vacuole   • vacuole   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • organelle membrane   • lysosome   • Golgi apparatus   • endomembrane system   • cilium   • plasma membrane bounded cell projection   • ciliary basal body   • cell projection   • protein binding   • binding   • enzyme binding   • GTPase binding   • protein-containing complex binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • cell population proliferation   • cellular process   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • signal transduction   • cell communication   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • response to oxygen-containing compound   • cellular response to oxygen-containing compound   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to chemical stimulus   • cellular response to alcohol   • response to hormone   • response to chemical   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • phospholipase C-activating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to monoamine stimulus   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • synaptic signaling   • cellular response to acetylcholine   • cell-cell signaling   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • non-motile cilium   • 9+0 non-motile cilium   • neuron projection   • photoreceptor disc membrane   • photoreceptor outer segment   • photoreceptor cell cilium   • synapse   • cell junction   • G-protein beta-subunit binding   • fibroblast proliferation   • molecular transducer activity   • coreceptor activity   • signaling receptor activity   • cytoskeletal protein binding   • myosin light chain binding   • myosin binding   • small molecule binding   • C-C chemokine binding   • chemokine binding   • cytokine binding   • G protein-coupled chemoattractant receptor activity   • C-X-C motif chemokine 12 receptor activity   • C-X-C chemokine receptor activity   • chemokine receptor activity   • G protein-coupled receptor activity   • transmembrane signaling receptor activity   • cytokine receptor activity   • immune receptor activity   • ubiquitin protein ligase binding   • ubiquitin-like protein ligase binding   • virus receptor activity   • exogenous protein binding   • C-C chemokine receptor activity   • ubiquitin binding   • ubiquitin-like protein binding   • actin binding   • bioluminescence   • metabolic process   • generation of precursor metabolites and energy   • head development   • central nervous system development   • brain development   • nervous system development   • cell adhesion   • regulation of cell adhesion   • neuron recognition   • cellular developmental process   • cell development   • generation of neurons   • neurogenesis   • neuron differentiation   • cell differentiation   • neuron development   • cell recognition   • regulation of calcium ion transport   • regulation of localization   • transport   • regulation of transport   • regulation of monoatomic ion transport   • establishment of localization   • metal ion transport   • calcium ion transport   • localization   • monoatomic ion transport   • regulation of metal ion transport   • monoatomic cation transport   • response to mechanical stimulus   • response to abiotic stimulus   • response to external stimulus   • response to ultrasound   • chemotaxis   • positive regulation of locomotion   • regulation of response to external stimulus   • positive regulation of biological process   • regulation of chemotaxis   • positive regulation of chemotaxis   • positive regulation of response to stimulus   • positive regulation of response to external stimulus   • taxis   • regulation of response to stimulus   • regulation of locomotion   • locomotion   • forebrain development   • telencephalon cell migration   • forebrain cell migration   • cell migration   • telencephalon development   • cell motility   • apoptotic process   • cell death   • programmed cell death   • epithelium development   • endothelium development   • tube development   • morphogenesis of an endothelium   • endothelial tube morphogenesis   • morphogenesis of an epithelium   • tissue development   • tissue morphogenesis   • anatomical structure morphogenesis   • tube morphogenesis   • epithelial tube morphogenesis   • regulation of viral process   • viral process   • membrane organization   • cellular component organization   • myelination   • myelin maintenance   • axon ensheathment   • ensheathment of neurons   • plasma membrane organization   • cellular component organization or biogenesis   • endomembrane system organization   • cell chemotaxis   • dendritic cell chemotaxis   • leukocyte migration   • dendritic cell migration   • immune system process   • mononuclear cell migration   • leukocyte chemotaxis   • detection of external stimulus   • detection of stimulus involved in sensory perception of pain   • sensory perception of temperature stimulus   • sensory perception of pain   • detection of temperature stimulus involved in sensory perception   • response to temperature stimulus   • detection of abiotic stimulus   • detection of stimulus   • detection of temperature stimulus   • detection of stimulus involved in sensory perception   • detection of temperature stimulus involved in sensory perception of pain   • response to decreased oxygen levels   • response to hypoxia   • response to stress   • response to oxygen levels   • cellular response to xenobiotic stimulus   • response to xenobiotic stimulus   • epithelial cell development   • epithelial cell differentiation   • regulation of growth   • developmental growth   • cell projection organization   • neuron projection development   • regulation of cell morphogenesis   • positive regulation of developmental process   • cell projection morphogenesis   • neuron projection morphogenesis   • positive regulation of developmental growth   • developmental growth involved in morphogenesis   • positive regulation of dendrite extension   • regulation of cellular component organization   • regulation of developmental process   • plasma membrane bounded cell projection morphogenesis   • cell growth   • cell morphogenesis   • dendrite extension   • positive regulation of cellular process   • regulation of anatomical structure morphogenesis   • neuron projection extension   • regulation of developmental growth   • plasma membrane bounded cell projection organization   • developmental cell growth   • growth   • regulation of dendrite extension   • positive regulation of cell growth   • regulation of cell growth   • positive regulation of growth   • positive regulation of cytosolic calcium ion concentration   • regulation of biological quality   • detection of mechanical stimulus involved in sensory perception of pain   • detection of mechanical stimulus involved in sensory perception   • sensory perception of mechanical stimulus   • detection of mechanical stimulus   • immune response   • cell surface receptor signaling pathway   • chemokine (C-X-C motif) ligand 12 signaling pathway   • CXCL12-activated CXCR4 signaling pathway   • response to cytokine   • response to chemokine   • cytokine-mediated signaling pathway   • cellular response to chemokine   • chemokine-mediated signaling pathway   • response to peptide   • cellular response to cytokine stimulus   • C-X-C chemokine receptor CXCR4 signaling pathway   • response to activity   • regulation of cell motility   • positive regulation of mesenchymal stem cell migration   • positive regulation of cell migration   • regulation of mesenchymal stem cell migration   • mesenchymal stem cell migration   • positive regulation of cell motility   • regulation of cell migration   • calcium-mediated signaling   • endothelial cell differentiation   • angiogenesis   • regulation of vasculature development   • regulation of response to wounding   • positive regulation of vascular wound healing   • vascular wound healing   • regulation of response to stress   • regulation of multicellular organismal process   • response to wounding   • blood vessel development   • positive regulation of response to wounding   • wound healing   • regulation of multicellular organismal development   • blood vessel morphogenesis   • angiogenesis involved in wound healing   • positive regulation of angiogenesis   • vasculature development   • circulatory system development   • positive regulation of vasculature development   • positive regulation of wound healing   • regulation of angiogenesis   • regulation of wound healing   • anatomical structure formation involved in morphogenesis   • positive regulation of multicellular organismal process   • regulation of vascular wound healing   • positive regulation of cell communication   • positive regulation of signal transduction   • regulation of signal transduction   • positive regulation of macrophage migration inhibitory factor signaling pathway   • positive regulation of response to cytokine stimulus   • macrophage migration inhibitory factor signaling pathway   • regulation of signaling   • regulation of macrophage migration inhibitory factor signaling pathway   • regulation of cytokine-mediated signaling pathway   • regulation of response to cytokine stimulus   • regulation of cell communication   • positive regulation of cytokine-mediated signaling pathway   • positive regulation of signaling   • homeostatic process   • adaptive thermogenesis   • positive regulation of metabolic process   • multicellular organismal-level homeostasis   • regulation of cold-induced thermogenesis   • cold-induced thermogenesis   • temperature homeostasis   • positive regulation of cold-induced thermogenesis   • regulation of metabolic process   • regulation of programmed cell death   • response to tacrolimus   • heart process   • circulatory system process   • cardiac muscle contraction   • heart contraction   • muscle contraction   • muscle system process   • blood circulation   • striated muscle contraction   • biological process involved in interspecies interaction between organisms   • response to other organism   • response to external biotic stimulus   • response to virus   • response to biotic stimulus   • defense response   • inflammatory response   • neuron migration   • positive regulation of nervous system development   • regulation of neurogenesis   • regulation of cell differentiation   • regulation of gliogenesis   • positive regulation of gliogenesis   • regulation of cell development   • regulation of nervous system development   • gliogenesis   • positive regulation of cell differentiation   • positive regulation of neurogenesis   • positive regulation of oligodendrocyte differentiation   • positive regulation of cell development   • regulation of glial cell differentiation   • positive regulation of glial cell differentiation   • oligodendrocyte differentiation   • glial cell differentiation   • regulation of oligodendrocyte differentiation   • cell surface   • external side of plasma membrane   • cell leading edge   • anchoring junction   • cytoplasmic vesicle   • intracellular vesicle   • early endosome   • endosome   • late endosome
SCOP2Domain Identifier• Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like
SCOP2Family Identifier• Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeCLR
PDB ResiduesW:W:?1
Environment DetailsOpen EMBL-EBI Page
CodeCLR
NameCholesterol
Synonyms
  • Cholesterin
  • Cholesterol
  • Cholest-5-en-3beta-ol
  • (3β,14β,17α)-cholest-5-en-3-ol
Identifier
FormulaC27 H46 O
Molecular Weight386.654
SMILES
PubChem5997
Formal Charge0
Total Atoms74
Total Chiral Atoms8
Total Bonds77
Total Aromatic Bonds0

CodeVH6
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeVH6
NamePlerixafor
Synonyms1,1'-[1,4-phenylenebis(methylene)]bis(1,4,8,11-tetraazacyclotetradecane); AMD3100
Identifier
FormulaC28 H54 N8
Molecular Weight502.782
SMILES
PubChem65015
Formal Charge0
Total Atoms90
Total Chiral Atoms0
Total Bonds92
Total Aromatic Bonds6

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP61073
Sequence
>8U4P_nogp_Chain_R
NANFNKIFL PTIYSIIFL TGIVGNGLV ILVMGYQKK LRSMTDKYR 
LHLSVADLL FVITLPFWA VDAVANWYF GNFLCKAVH VIYTVSLYS 
SVLILAFIS LDRYLAIVH ATNSQRPRK LLAEKVVYV GVWIPALLL 
TIPDFIFAN VSEADDRYI CDRFYPNDL WVVVFQFQH IMVGLILPG 
IVILSCYCI IISKLSHSK GHQKRKALK TTVILILAF FACWLPYYI 
GISIDSFIL LEIIKQGCE FENTVHKWI SITEALAFF HCCLNPILY 
AFLGAKFKT SAQHALT


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8YU7AProteinChemokineCXCR4Homo sapiens---3.012025-03-0510.1016/j.celrep.2025.115255
8YU7 (Multimeric) AProteinChemokineCXCR4Homo sapiens--3.012025-03-0510.1016/j.celrep.2025.115255
8K3ZAProteinChemokineCXCR4Homo sapiensCXCL12-Gi1/β1/γ12.812024-07-17To be published
8K3Z (No Gprot) AProteinChemokineCXCR4Homo sapiensCXCL12-2.812024-07-17To be published
8U4TAProteinChemokineCXCR4Homo sapiensREGN7663-Fab--3.382024-03-13doi.org/10.1038/s41594-024-01397-1
8U4T (Multimeric) AProteinChemokineCXCR4Homo sapiensREGN7663-Fab-3.382024-03-13doi.org/10.1038/s41594-024-01397-1
8U4SAProteinChemokineCXCR4Homo sapiensREGN7663-Fab--3.352024-03-13doi.org/10.1038/s41594-024-01397-1
8U4S (Multimeric) AProteinChemokineCXCR4Homo sapiensREGN7663-Fab-3.352024-03-13doi.org/10.1038/s41594-024-01397-1
8U4RAProteinChemokineCXCR4Homo sapiensREGN7663-FabCholesterol-3.12024-03-1310.1101/2024.02.09.579708
8U4QAProteinChemokineCXCR4Homo sapiensREGN7663-FabCholesterolGi1/β1/γ23.362024-03-1310.1101/2024.02.09.579708
8U4Q (No Gprot) AProteinChemokineCXCR4Homo sapiensREGN7663-FabCholesterol3.362024-03-1310.1101/2024.02.09.579708
8U4PAProteinChemokineCXCR4Homo sapiensAMD3100CholesterolGi1/β1/γ23.152024-03-1310.1101/2024.02.09.579708
8U4P (No Gprot) AProteinChemokineCXCR4Homo sapiensAMD3100Cholesterol3.152024-03-1310.1101/2024.02.09.579708
8U4OAProteinChemokineCXCR4Homo sapiensCXCL12CholesterolGi1/β1/γ23.292024-03-1310.1101/2024.02.09.579708
8U4O (No Gprot) AProteinChemokineCXCR4Homo sapiensCXCL12Cholesterol3.292024-03-1310.1101/2024.02.09.579708
8U4NAProteinChemokineCXCR4Homo sapiens-CholesterolGi1/β1/γ22.722024-03-1310.1101/2024.02.09.579708
8U4N (No Gprot) AProteinChemokineCXCR4Homo sapiens-Cholesterol2.722024-03-1310.1101/2024.02.09.579708
8ZPNAProteinChemokineCXCR4Homo sapiensAMD3100Cholesterol-3.312025-02-26To be published
8ZPMAProteinChemokineCXCR4Homo sapiensAMD070Cholesterol-3.22025-02-26To be published
8ZPLAProteinChemokineCXCR4Homo sapiensHF51116Cholesterol-3.012025-02-26To be published
4RWSAProteinChemokineCXCR4Homo sapiensvMIP-II--3.12015-02-1110.1126/science.1261064
3OE9AProteinChemokineCXCR4Homo sapiensIT1t--3.12010-10-2710.1126/science.1194396
3OE9 (Multimeric) AProteinChemokineCXCR4Homo sapiensIT1t-3.12010-10-2710.1126/science.1194396
3OE8AProteinChemokineCXCR4Homo sapiensIT1t--3.12010-10-2710.1126/science.1194396
3OE8 (Multimeric) AProteinChemokineCXCR4Homo sapiensIT1t-3.12010-10-2710.1126/science.1194396
3OE6AProteinChemokineCXCR4Homo sapiensIT1t--3.22010-10-2710.1126/science.1194396
3OE0AProteinChemokineCXCR4Homo sapiensCVX15--2.92010-10-2710.1126/science.1194396
3ODUAProteinChemokineCXCR4Homo sapiensIT1t--2.52010-10-2710.1126/science.1194396
3ODU (Multimeric) AProteinChemokineCXCR4Homo sapiensIT1t-2.52010-10-2710.1126/science.1194396




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8U4P_nogp.zip



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