Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 9.417691310
2R:R:Y15 11.6414
3R:R:N30 6.08409
4R:R:T46 4.655435
5R:R:F48 8.52529
6R:R:F50 5.934508
7R:R:D58 7.915409
8R:R:I78 3.5725445
9R:R:F80 7.18403
10R:R:L91 4.14414
11R:R:F93 8406
12R:R:H95 4.22716
13R:R:R111 11.3825438
14R:R:Y118 7.265638
15R:R:L131 4.1625407
16R:R:W135 4.16409
17R:R:V171 3.85445
18R:R:M177 4.555415
19R:R:F180 6.3725415
20R:R:F182 9.085405
21R:R:W185 6.20667615
22R:R:R205 5.125405
23R:R:L238 5.2725406
24R:R:W243 6.40286718
25R:R:V259 4.3375404
26R:R:I268 8.4275415
27R:R:Y282 4.865669
28R:R:F289 6.55167628
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:I268 16.582816.53YesYes105
2R:R:I268 R:R:Y15 15.34924.84YesYes154
3R:R:L269 R:R:M18 10.47228.48NoNo054
4L:L:?1 R:R:W243 68.80153.47YesYes108
5R:R:N274 R:R:W243 99.7035.65NoYes198
6R:R:N274 R:R:N278 10014.98NoNo099
7R:R:D58 R:R:N278 63.55785.39YesNo099
8R:R:N278 R:R:Y282 71.71444.65NoYes099
9R:R:I104 R:R:Y282 55.58324.84NoYes689
10R:R:F50 R:R:I104 55.11343.77YesNo088
11R:R:D107 R:R:F50 45.771711.94NoYes098
12R:R:D107 R:R:R111 20.665610.72NoYes398
13R:R:R111 R:R:T47 19.16229.06YesNo088
14R:R:F48 R:R:T47 17.38913.89YesNo098
15R:R:F289 R:R:F48 11.35436.43YesYes289
16R:R:D107 R:R:Y118 24.27265.75NoYes398
17L:L:?1 R:R:H95 41.91623.14YesYes106
18R:R:H95 R:R:S138 16.36462.79YesNo068
19R:R:A96 R:R:S138 15.03393.42NoNo078
20R:R:A96 R:R:W135 13.69736.48NoYes079
21R:R:D58 R:R:S275 55.31347.36YesNo099
22R:R:S275 R:R:V61 53.73126.46NoNo098
23R:R:V61 R:R:V65 52.9313.21NoNo087
24R:R:L90 R:R:V65 48.002511.92NoNo067
25R:R:L68 R:R:L90 46.29615.54NoNo056
26R:R:L68 R:R:M86 45.444411.31NoNo056
27R:R:M86 R:R:S82 44.58353.07NoNo065
28R:R:I78 R:R:S82 43.71674.64YesNo055
29R:R:C83 R:R:I78 20.09284.91NoYes495
30R:R:C83 R:R:V171 19.13493.42NoYes495
31R:R:F80 R:R:V171 32.53215.24YesYes035
32R:R:F80 R:R:Y81 14.509613.41YesNo031
33R:R:H79 R:R:Y81 12.45452.18NoNo071
34R:R:H79 R:R:T162 10.39342.74NoNo073
35R:R:C166 R:R:I78 20.09283.27NoYes495
36R:R:C166 R:R:V171 19.13495.12NoYes495
37R:R:H95 R:R:V141 17.97416.92YesNo164
38R:R:F180 R:R:V141 16.71015.24YesNo154
39R:R:F180 R:R:T144 15.32193.89YesNo155
40R:R:P145 R:R:T144 12.87585.25NoNo155
41R:R:C88 R:R:P145 20.5115.65NoNo065
42R:R:H95 R:R:W185 22.85713.17YesYes165
43R:R:F180 R:R:W185 16.53735.01YesYes155
44R:R:F180 R:R:Y176 15.33411.35YesNo156
45R:R:P145 R:R:Y176 12.718213.91NoNo156
46R:R:C88 R:R:M146 10.53896.48NoNo065
47L:L:?1 R:R:M177 13.75185.17YesYes105
48R:R:M177 R:R:S181 13.52154.6YesNo055
49R:R:L110 R:R:Y118 12.8912.34NoYes058
50R:R:K113 R:R:L110 11.83622.82NoNo065
51R:R:F80 R:R:N150 12.25454.83YesNo035
52R:R:H95 R:R:S181 26.21854.18YesNo065
53R:R:I186 R:R:S181 37.67883.1NoNo075
54R:R:F182 R:R:I186 35.72997.54YesNo057
55R:R:F182 R:R:L183 27.87344.87YesNo054
56R:R:L183 R:R:Y179 25.89422.34NoNo043
57R:R:Y179 R:R:Y254 19.9213.9NoNo034
58R:R:D175 R:R:Y254 16.08274.6NoNo044
59R:R:D175 R:R:R173 14.06715.48NoNo044
60R:R:R173 R:R:T154 10.226710.35NoNo042
61R:R:V235 R:R:Y282 15.87055.05NoYes089
62R:R:V235 R:R:Y197 14.86723.79NoNo089
63R:R:L232 R:R:Y197 13.9614.69NoNo089
64R:R:L232 R:R:T228 12.90012.95NoNo087
65R:R:I204 R:R:T228 11.97561.52NoNo087
66R:R:H95 R:R:T94 33.74455.48YesNo166
67R:R:T94 R:R:W243 34.06584.85NoYes168
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:L91 4.22 1 Yes Yes 0 4 0 1
L:L:?1 R:R:T94 10.78 1 Yes No 0 6 0 1
L:L:?1 R:R:H95 3.14 1 Yes Yes 0 6 0 1
L:L:?1 R:R:F168 40.84 1 Yes No 0 5 0 1
L:L:?1 R:R:V169 6.36 1 Yes No 0 4 0 1
L:L:?1 R:R:M174 4.31 1 Yes No 0 3 0 1
L:L:?1 R:R:M177 5.17 1 Yes Yes 0 5 0 1
L:L:?1 R:R:W243 3.47 1 Yes Yes 0 8 0 1
L:L:?1 R:R:N250 3.35 1 Yes No 0 5 0 1
L:L:?1 R:R:I253 6.96 1 Yes No 0 4 0 1
L:L:?1 R:R:L264 11.81 1 Yes No 0 4 0 1
L:L:?1 R:R:I268 16.53 1 Yes Yes 0 5 0 1
L:L:?1 R:R:H272 5.49 1 Yes No 0 7 0 1
R:R:E19 R:R:Y15 6.73 1 No Yes 5 4 2 2
R:R:I268 R:R:Y15 4.84 1 Yes Yes 5 4 1 2
R:R:E19 R:R:H272 17.23 1 No No 5 7 2 1
R:R:H95 R:R:L91 3.86 1 Yes Yes 6 4 1 1
R:R:L91 R:R:M172 4.24 1 Yes No 4 4 1 2
R:R:L91 R:R:M177 4.24 1 Yes Yes 4 5 1 1
R:R:H95 R:R:T94 5.48 1 Yes No 6 6 1 1
R:R:T94 R:R:W243 4.85 1 No Yes 6 8 1 1
R:R:H95 R:R:V141 6.92 1 Yes No 6 4 1 2
R:R:H95 R:R:S181 4.18 1 Yes No 6 5 1 2
R:R:H95 R:R:W185 3.17 1 Yes Yes 6 5 1 2
R:R:I98 R:R:W243 9.4 0 No Yes 8 8 2 1
R:R:V141 R:R:W185 11.03 1 No Yes 4 5 2 2
R:R:F168 R:R:M172 11.2 0 No No 5 4 1 2
R:R:M174 R:R:N250 5.61 1 No No 3 5 1 1
R:R:I253 R:R:M174 4.37 1 No No 4 3 1 1
R:R:M177 R:R:S181 4.6 1 Yes No 5 5 1 2
R:R:M177 R:R:N250 4.21 1 Yes No 5 5 1 1
R:R:F239 R:R:W243 14.03 0 No Yes 8 8 2 1
R:R:S242 R:R:W243 3.71 1 No Yes 8 8 2 1
R:R:N274 R:R:S242 8.94 1 No No 9 8 2 2
R:R:S271 R:R:W243 3.71 0 No Yes 7 8 2 1
R:R:N274 R:R:W243 5.65 1 No Yes 9 8 2 1
R:R:I268 R:R:L246 5.71 1 Yes No 5 6 1 2
R:R:L246 R:R:S271 6.01 0 No No 6 7 2 2
R:R:I253 R:R:V259 6.14 1 No Yes 4 4 1 2
R:R:H272 R:R:I268 6.63 1 No Yes 7 5 1 1
R:R:H95 R:R:S138 2.79 1 Yes No 6 8 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8X16_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.1
Number of Linked Nodes 262
Number of Links 282
Number of Hubs 28
Number of Links mediated by Hubs 120
Number of Communities 6
Number of Nodes involved in Communities 42
Number of Links involved in Communities 59
Path Summary
Number Of Nodes in MetaPath 68
Number Of Links MetaPath 67
Number of Shortest Paths 54875
Length Of Smallest Path 3
Average Path Length 15.5983
Length of Longest Path 36
Minimum Path Strength 1.22
Average Path Strength 6.33206
Maximum Path Strength 28.685
Minimum Path Correlation 0.7
Average Path Correlation 0.923888
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.84615
Average % Of Corr. Nodes 44.0223
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 34.6434
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeQ8L
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeQ8L
NamePiclidenoson
Synonyms(2S,3S,4R,5R)-3,4-dihydroxy-5-(6-{[(3-iodophenyl)methyl]amino}-9H-purin-9-yl)-N-methyloxolane-2-carboxamide (non-preferred name)
Identifier
FormulaC18 H19 I N6 O4
Molecular Weight510.286
SMILES
PubChem123683
Formal Charge0
Total Atoms48
Total Chiral Atoms4
Total Bonds51
Total Aromatic Bonds16

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP0DMS8
Sequence
>8X16_nogp_Chain_R
SLANVTYIT MEIFIGLCA IVGNVLVIC VVKLNPSLQ TTTFYFIVS 
LALADIAVG VLVMPLAIV VSLGITIHF YSCLFMTCL LLIFTHASI 
MSLLAIAVD RYLRVKLTV RYKRVTTHR RIWLALGLC WLVSFLVGL 
TPMFGWNMK LTSEYHRNV TFLSCQFVS VMRMDYMVY FSFLTWIFI 
PLVVMCAIY LDIFYIIRN KLSLYGREF KTAKSLFLV LFLFALSWL 
PLSIINCII YFNGEVPQL VLYMGILLS HANSMMNPI VYAYKIKKF 
KETYLLILK AC


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8X16ANucleotideAdenosineA3AHomo sapiensPiclidenoson-Gi1/β1/γ23.292024-04-24doi.org/10.1038/s41467-024-47207-6
8X16 (No Gprot) ANucleotideAdenosineA3AHomo sapiensPiclidenoson-3.292024-04-24doi.org/10.1038/s41467-024-47207-6
8X17ANucleotideAdenosineA3AHomo sapiensNamodenoson-Gi1/β1/γ23.192024-04-24doi.org/10.1038/s41467-024-47207-6
8X17 (No Gprot) ANucleotideAdenosineA3AHomo sapiensNamodenoson-3.192024-04-24doi.org/10.1038/s41467-024-47207-6
8YH0ANucleotideAdenosineA3AHomo sapiensNECA-Gi1/β1/γ22.862024-11-06doi.org/10.1038/s41467-024-53473-1
8YH0 (No Gprot) ANucleotideAdenosineA3AHomo sapiensNECA-2.862024-11-06doi.org/10.1038/s41467-024-53473-1
8YH2ANucleotideAdenosineA3AHomo sapiensAdenosine-Gi1/β1/γ23.272024-11-06doi.org/10.1038/s41467-024-53473-1
8YH2 (No Gprot) ANucleotideAdenosineA3AHomo sapiensAdenosine-3.272024-11-06doi.org/10.1038/s41467-024-53473-1
8YH3ANucleotideAdenosineA3AHomo sapiensN-methyladenosine-Gi1/β1/γ23.42024-11-06doi.org/10.1038/s41467-024-53473-1
8YH3 (No Gprot) ANucleotideAdenosineA3AHomo sapiensN-methyladenosine-3.42024-11-06doi.org/10.1038/s41467-024-53473-1
8YH5ANucleotideAdenosineA3AHomo sapiensRiboprine-Gi1/β1/γ23.662024-11-06doi.org/10.1038/s41467-024-53473-1
8YH5 (No Gprot) ANucleotideAdenosineA3AHomo sapiensRiboprine-3.662024-11-06doi.org/10.1038/s41467-024-53473-1
8YH6ANucleotideAdenosineA3AHomo sapiensNamodenoson-Gi1/β1/γ23.622024-11-06doi.org/10.1038/s41467-024-53473-1
8YH6 (No Gprot) ANucleotideAdenosineA3AHomo sapiensNamodenoson-3.622024-11-06doi.org/10.1038/s41467-024-53473-1
9EBHANucleotideAdenosineA3AHomo sapiensAdenosine-Gi1/β1/γ23.62025-08-20doi.org/10.1038/s41467-025-62872-x
9EBH (No Gprot) ANucleotideAdenosineA3AHomo sapiensAdenosine-3.62025-08-20doi.org/10.1038/s41467-025-62872-x
9EBIANucleotideAdenosineA3AHomo sapiensPiclidenoson-chim(NtGi1L-Gs-CtGi1)/β1/γ23.62025-08-20doi.org/10.1038/s41467-025-62872-x
9EBI (No Gprot) ANucleotideAdenosineA3AHomo sapiensPiclidenoson-3.62025-08-20doi.org/10.1038/s41467-025-62872-x
9EHSANucleotideAdenosineA3AHomo sapiensLUF7602--3.22025-08-20doi.org/10.1038/s41467-025-62872-x




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Download 8X16_nogp.zip



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