Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 10.27331210
2R:R:Y15 10.554514
3R:R:E19 7.854515
4R:R:F48 7.484509
5R:R:F50 8.2625408
6R:R:L54 8.315419
7R:R:D58 8.248519
8R:R:V61 5.125418
9R:R:V65 4.34417
10R:R:F80 6.095443
11R:R:F93 5.872506
12R:R:H95 5.9725406
13R:R:L101 5.84418
14R:R:Y118 8.99833638
15R:R:V141 6.565424
16R:R:K152 5.3425444
17R:R:F168 13.1825415
18R:R:V171 5.905405
19R:R:Y176 9.602526
20R:R:F180 7.8525
21R:R:F182 6.372505
22R:R:W185 10.585425
23R:R:I196 5.5925406
24R:R:Y197 5.818509
25R:R:L232 3.2975408
26R:R:L234 3.605456
27R:R:F239 6.5825418
28R:R:W243 9.796518
29R:R:Y254 7.744504
30R:R:V259 5.8725404
31R:R:Y265 11.6525404
32R:R:H272 7.01333617
33R:R:N274 7.345419
34R:R:M276 3.3875406
35R:R:N278 8.014519
36R:R:Y282 7.115619
37R:R:F289 8.1575408
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:I268 14.45896.96YesNo105
2R:R:I268 R:R:Y15 17.09877.25NoYes154
3R:R:Y15 R:R:Y265 12.343618.86YesYes044
4L:L:?1 R:R:H272 33.264810.19YesYes107
5R:R:E19 R:R:H272 21.44269.85YesYes157
6R:R:E19 R:R:M66 13.86014.06YesNo056
7R:R:G23 R:R:M66 11.39325.24NoNo066
8L:L:?1 R:R:W243 98.57888.33YesYes108
9R:R:N274 R:R:W243 1006.78YesYes198
10R:R:N274 R:R:N278 56.18528.17YesYes199
11R:R:D58 R:R:N278 24.678210.77YesYes199
12R:R:H272 R:R:V61 27.7534.15YesYes178
13R:R:S275 R:R:V61 29.3389.7NoYes098
14R:R:D58 R:R:S275 29.13544.42YesNo099
15R:R:D58 R:R:N30 36.241210.77YesNo099
16R:R:N30 R:R:P279 30.648911.4NoNo099
17R:R:P279 R:R:V33 26.95753.53NoNo099
18R:R:F289 R:R:V33 23.20057.87YesNo089
19R:R:F289 R:R:F48 15.65078.57YesYes089
20R:R:L101 R:R:N274 44.00855.49YesYes189
21R:R:L101 R:R:L54 20.15555.54YesYes189
22R:R:L54 R:R:S100 47.6944.5YesNo097
23R:R:S100 R:R:S53 46.21624.89NoNo079
24R:R:L131 R:R:S53 35.704910.51NoNo079
25R:R:F50 R:R:L131 34.17956.09YesNo087
26R:R:D107 R:R:F50 29.543617.91NoYes098
27R:R:D107 R:R:Y118 24.9949.2NoYes398
28R:R:L54 R:R:N278 19.964812.36YesYes199
29R:R:F93 R:R:V65 10.48443.93YesYes067
30L:L:?1 R:R:L91 45.57866.75YesNo004
31R:R:L91 R:R:Y176 44.19628.21NoYes046
32R:R:P145 R:R:Y176 37.158916.69NoYes056
33R:R:C88 R:R:P145 69.58355.65NoNo065
34R:R:C88 R:R:M146 67.55454.86NoNo065
35R:R:L84 R:R:M146 63.47284.24NoNo065
36R:R:L84 R:R:V171 38.32984.47NoYes065
37R:R:C83 R:R:V171 10.95525.12NoYes095
38L:L:?1 R:R:F168 37.480634.9YesYes105
39R:R:F168 R:R:M172 35.08528.71YesNo154
40R:R:M172 R:R:P145 34.46556.71NoNo045
41R:R:L84 R:R:N150 23.54615.49NoNo065
42R:R:K152 R:R:N150 19.29154.2YesNo045
43R:R:K152 R:R:Y81 10.76454.78YesNo441
44R:R:H79 R:R:Y81 17.32516.53NoNo071
45R:R:F80 R:R:V171 17.43539.18YesYes035
46R:R:F80 R:R:Y81 10.87184.13YesNo431
47L:L:?1 R:R:H95 17.31324.7YesYes006
48R:R:L101 R:R:Y282 34.50428.21YesYes189
49R:R:R108 R:R:Y282 34.03356.17NoYes199
50R:R:R108 R:R:Y197 32.84778.23NoYes099
51R:R:A105 R:R:Y197 29.26654NoYes089
52R:R:A105 R:R:I196 26.55233.25NoYes086
53R:R:I196 R:R:V192 11.93843.07YesNo066
54R:R:N278 R:R:Y282 46.06424.65YesYes199
55R:R:V235 R:R:Y282 33.866612.62NoYes089
56R:R:V235 R:R:Y197 32.64216.31NoYes089
57R:R:L232 R:R:Y197 28.71233.52YesYes089
58L:L:?1 R:R:M174 23.56396.9YesNo003
59R:R:M174 R:R:Y254 12.29597.18NoYes034
60R:R:R173 R:R:T154 12.06059.06NoNo042
61R:R:M151 R:R:T154 10.29089.03NoNo042
62R:R:F201 R:R:L232 11.92652.44NoYes058
63R:R:V281 R:R:Y282 12.43593.79NoYes089
64R:R:L234 R:R:V281 10.86887.45YesNo068
65R:R:I253 R:R:M174 10.95524.37NoNo043
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:L91 6.75 1 Yes No 0 4 0 1
L:L:?1 R:R:T94 11.68 1 Yes No 0 6 0 1
L:L:?1 R:R:H95 4.7 1 Yes Yes 0 6 0 1
L:L:?1 R:R:F168 34.9 1 Yes Yes 0 5 0 1
L:L:?1 R:R:V169 6.36 1 Yes No 0 4 0 1
L:L:?1 R:R:M174 6.9 1 Yes No 0 3 0 1
L:L:?1 R:R:W243 8.33 1 Yes Yes 0 8 0 1
L:L:?1 R:R:L246 11.81 1 Yes No 0 6 0 1
L:L:?1 R:R:N250 9.21 1 Yes No 0 5 0 1
L:L:?1 R:R:I268 6.96 1 Yes No 0 5 0 1
L:L:?1 R:R:S271 5.49 1 Yes No 0 7 0 1
L:L:?1 R:R:H272 10.19 1 Yes Yes 0 7 0 1
R:R:E19 R:R:Y15 15.71 1 Yes Yes 5 4 2 2
R:R:I268 R:R:Y15 7.25 1 No Yes 5 4 1 2
R:R:E19 R:R:H272 9.85 1 Yes Yes 5 7 2 1
R:R:V61 R:R:V65 4.81 1 Yes Yes 8 7 2 2
R:R:H272 R:R:V61 4.15 1 Yes Yes 7 8 1 2
R:R:H272 R:R:V65 4.15 1 Yes Yes 7 7 1 2
R:R:T87 R:R:V72 4.76 1 No No 4 5 2 2
R:R:F168 R:R:V72 3.93 1 Yes No 5 5 1 2
R:R:F168 R:R:T87 5.19 1 Yes No 5 4 1 2
R:R:M172 R:R:T87 7.53 1 No No 4 4 2 2
R:R:L91 R:R:Y176 8.21 0 No Yes 4 6 1 2
R:R:L91 R:R:M177 4.24 0 No No 4 5 1 2
R:R:T94 R:R:W243 6.06 1 No Yes 6 8 1 1
R:R:H95 R:R:V141 6.92 0 Yes Yes 6 4 1 2
R:R:H95 R:R:S181 6.97 0 Yes No 6 5 1 2
R:R:H95 R:R:I186 5.3 0 Yes No 6 7 1 2
R:R:F239 R:R:I98 5.02 1 Yes No 8 8 2 2
R:R:I98 R:R:W243 18.79 1 No Yes 8 8 2 1
R:R:F168 R:R:M172 8.71 1 Yes No 5 4 1 2
R:R:I253 R:R:M174 4.37 0 No No 4 3 2 1
R:R:M174 R:R:Y254 7.18 0 No Yes 3 4 1 2
R:R:M177 R:R:S181 6.13 0 No No 5 5 2 2
R:R:F239 R:R:W243 9.02 1 Yes Yes 8 8 2 1
R:R:N274 R:R:W243 6.78 1 Yes Yes 9 8 2 1
R:R:H272 R:R:I268 3.98 1 Yes No 7 5 1 1
R:R:H272 R:R:S271 9.76 1 Yes No 7 7 1 1
R:R:G267 R:R:L246 3.42 0 No No 6 6 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9EBI_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.93
Number of Linked Nodes 248
Number of Links 274
Number of Hubs 37
Number of Links mediated by Hubs 143
Number of Communities 5
Number of Nodes involved in Communities 43
Number of Links involved in Communities 59
Path Summary
Number Of Nodes in MetaPath 66
Number Of Links MetaPath 65
Number of Shortest Paths 67677
Length Of Smallest Path 3
Average Path Length 13.9195
Length of Longest Path 28
Minimum Path Strength 1.45
Average Path Strength 7.19711
Maximum Path Strength 22.055
Minimum Path Correlation 0.7
Average Path Correlation 0.913667
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.7619
Average % Of Corr. Nodes 39.7272
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 46.8972
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeQ8L
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeQ8L
NamePiclidenoson
Synonyms(2S,3S,4R,5R)-3,4-dihydroxy-5-(6-{[(3-iodophenyl)methyl]amino}-9H-purin-9-yl)-N-methyloxolane-2-carboxamide (non-preferred name)
Identifier
FormulaC18 H19 I N6 O4
Molecular Weight510.286
SMILES
PubChem123683
Formal Charge0
Total Atoms48
Total Chiral Atoms4
Total Bonds51
Total Aromatic Bonds16

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP0DMS8
Sequence
>9EBI_nogp_Chain_R
SLANVTYIT MEIFIGLCA IVGNVLVIC VVKLNPSLQ TTTFYFIVS 
LALADIAVG VLVMPLAIV VSLGITIHF YSCLFMTCL LLIFTHASI 
MSLLAIAVD RYLRVKLTV RYKRVTTHR RIWLALGLC WLVSFLVGL 
TPMFGWNMK LTSEYHRNV TFLSCQFVS VMRMDYMVY FSFLTWIFI 
PLVVMCAIY LDIFYIIRN KFKTAKSLF LVLFLFALS WLPLSIINC 
IIYFNGEVP QLVLYMGIL LSHANSMMN PIVYAYKIK KFKETY


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8X16ANucleotideAdenosineA3AHomo sapiensPiclidenoson-Gi1/β1/γ23.292024-04-24doi.org/10.1038/s41467-024-47207-6
8X16 (No Gprot) ANucleotideAdenosineA3AHomo sapiensPiclidenoson-3.292024-04-24doi.org/10.1038/s41467-024-47207-6
8X17ANucleotideAdenosineA3AHomo sapiensNamodenoson-Gi1/β1/γ23.192024-04-24doi.org/10.1038/s41467-024-47207-6
8X17 (No Gprot) ANucleotideAdenosineA3AHomo sapiensNamodenoson-3.192024-04-24doi.org/10.1038/s41467-024-47207-6
8YH0ANucleotideAdenosineA3AHomo sapiensNECA-Gi1/β1/γ22.862024-11-06doi.org/10.1038/s41467-024-53473-1
8YH0 (No Gprot) ANucleotideAdenosineA3AHomo sapiensNECA-2.862024-11-06doi.org/10.1038/s41467-024-53473-1
8YH2ANucleotideAdenosineA3AHomo sapiensAdenosine-Gi1/β1/γ23.272024-11-06doi.org/10.1038/s41467-024-53473-1
8YH2 (No Gprot) ANucleotideAdenosineA3AHomo sapiensAdenosine-3.272024-11-06doi.org/10.1038/s41467-024-53473-1
8YH3ANucleotideAdenosineA3AHomo sapiensN-methyladenosine-Gi1/β1/γ23.42024-11-06doi.org/10.1038/s41467-024-53473-1
8YH3 (No Gprot) ANucleotideAdenosineA3AHomo sapiensN-methyladenosine-3.42024-11-06doi.org/10.1038/s41467-024-53473-1
8YH5ANucleotideAdenosineA3AHomo sapiensRiboprine-Gi1/β1/γ23.662024-11-06doi.org/10.1038/s41467-024-53473-1
8YH5 (No Gprot) ANucleotideAdenosineA3AHomo sapiensRiboprine-3.662024-11-06doi.org/10.1038/s41467-024-53473-1
8YH6ANucleotideAdenosineA3AHomo sapiensNamodenoson-Gi1/β1/γ23.622024-11-06doi.org/10.1038/s41467-024-53473-1
8YH6 (No Gprot) ANucleotideAdenosineA3AHomo sapiensNamodenoson-3.622024-11-06doi.org/10.1038/s41467-024-53473-1
9EHSANucleotideAdenosineA3AHomo sapiensLUF7602--3.22025-08-20doi.org/10.1038/s41467-025-62872-x
9EBIANucleotideAdenosineA3AHomo sapiensPiclidenoson-chim(NtGi1L-Gs-CtGi1)/β1/γ23.62025-08-20doi.org/10.1038/s41467-025-62872-x
9EBI (No Gprot) ANucleotideAdenosineA3AHomo sapiensPiclidenoson-3.62025-08-20doi.org/10.1038/s41467-025-62872-x
9EBHANucleotideAdenosineA3AHomo sapiensAdenosine-Gi1/β1/γ23.62025-08-20doi.org/10.1038/s41467-025-62872-x
9EBH (No Gprot) ANucleotideAdenosineA3AHomo sapiensAdenosine-3.62025-08-20doi.org/10.1038/s41467-025-62872-x




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