Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:T11 7.13454
2R:R:I27 2.6975466
3R:R:N40 6.835495
4R:R:T46 4.26475
5R:R:F48 6.5525409
6R:R:D58 7.3825409
7R:R:I59 2.615467
8R:R:M66 5.25506
9R:R:H79 5.5575407
10R:R:F80 11.434503
11R:R:F93 5.1854116
12R:R:H95 4.614506
13R:R:I104 4.485448
14R:R:R111 9.4275478
15R:R:Y118 9.934578
16R:R:V141 6.3414
17R:R:P145 5.63415
18R:R:Y176 7.6975416
19R:R:M177 4.285415
20R:R:F182 7.1075405
21R:R:W185 9.1515
22R:R:Y197 7.42429749
23R:R:L238 4.4754126
24R:R:F239 6.1375428
25R:R:W243 8.43428
26R:R:L246 5.03436
27R:R:Y254 6.572504
28R:R:V259 4.008504
29R:R:Y265 14.005454
30R:R:I268 9.625435
31R:R:H272 9.2675437
32R:R:N278 7.16409
33R:R:Y282 6.574549
34R:R:Y284 4.0775405
35L:L:?1 10.2111030
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:I268 R:R:Y15 16.394813.3YesNo054
2R:R:E19 R:R:H272 26.217117.23NoYes057
3R:R:E19 R:R:M66 23.74875.41NoYes056
4R:R:D58 R:R:N278 25.05558.08YesYes099
5R:R:L101 R:R:N278 26.8156.87NoYes089
6R:R:L101 R:R:Y282 27.53254.69NoYes089
7R:R:Y197 R:R:Y282 62.56414.96YesYes499
8R:R:A105 R:R:Y197 1004NoYes089
9R:R:A105 R:R:M193 99.96164.83NoNo088
10R:R:F239 R:R:M193 99.80787.46YesNo088
11R:R:F239 R:R:W243 97.3016.01YesYes288
12R:R:T94 R:R:W243 98.74024.85NoYes068
13R:R:H95 R:R:T94 98.56944.11YesNo066
14R:R:H95 R:R:W185 95.2815.29YesYes065
15R:R:F180 R:R:W185 91.56137.02NoYes155
16R:R:F180 R:R:Y176 92.57359.28NoYes156
17R:R:M177 R:R:Y176 90.22043.59YesYes156
18R:R:F168 R:R:M177 90.95064.98NoYes055
19L:L:?1 R:R:F168 77.246331.8YesNo005
20L:L:?1 R:R:I268 15.942114.19YesYes305
21R:R:A283 R:R:F289 10.55266.93NoNo078
22R:R:A283 R:R:V33 11.58183.39NoNo079
23R:R:P279 R:R:V33 15.61753.53NoNo099
24R:R:N30 R:R:P279 16.59988.15NoNo099
25R:R:D58 R:R:N30 17.57356.73YesNo099
26R:R:F48 R:R:L43 12.149812.18YesNo098
27R:R:F48 R:R:T47 22.21566.49YesNo098
28R:R:R111 R:R:T47 25.55943.88YesNo088
29R:R:D107 R:R:R111 36.11218.34NoYes798
30R:R:D107 R:R:F50 66.907215.52NoNo098
31R:R:F50 R:R:I104 69.92653.77NoYes088
32R:R:I104 R:R:R108 35.486.26YesNo489
33R:R:R108 R:R:Y197 35.76617.2NoYes499
34R:R:I104 R:R:Y282 35.56123.63YesYes489
35R:R:R111 R:R:T46 10.19393.88YesYes785
36R:R:D107 R:R:Y118 29.4035.75NoYes798
37R:R:I127 R:R:Y49 15.43397.25NoNo064
38R:R:I127 R:R:T46 13.34983.04NoYes065
39R:R:I104 R:R:L54 14.93854.28YesNo089
40R:R:L68 R:R:M90 13.58478.48NoNo056
41L:L:?1 R:R:M90 14.92574.39YesNo006
42R:R:F80 R:R:K152 10.193918.61YesNo034
43R:R:F80 R:R:L84 25.580815.83YesNo036
44R:R:L84 R:R:T87 28.66844.42NoNo064
45R:R:F168 R:R:T87 29.63365.19NoNo054
46R:R:I196 R:R:Y197 15.07093.63NoYes069
47R:R:I196 R:R:Y109 10.15128.46NoNo068
48R:R:L110 R:R:Y118 10.7322.34NoYes058
49R:R:M174 R:R:Y254 12.62383.59NoYes034
50L:L:?1 R:R:M174 17.44536.15YesNo003
51R:R:L232 R:R:Y197 11.150517.58NoYes089
52R:R:L232 R:R:T228 10.08712.95NoNo087
53R:R:N274 R:R:N278 10.67225.45NoYes099
54L:L:?1 R:R:H272 25.687610.39YesYes307
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:I268 R:R:Y15 13.3 3 Yes No 5 4 1 2
R:R:E19 R:R:H272 17.23 0 No Yes 5 7 2 1
R:R:M90 R:R:V65 7.61 0 No No 6 7 1 2
R:R:H272 R:R:V65 4.15 3 Yes No 7 7 1 2
R:R:L68 R:R:M90 8.48 0 No No 5 6 2 1
R:R:F168 R:R:T87 5.19 0 No No 5 4 1 2
L:L:?1 R:R:M90 4.39 3 Yes No 0 6 0 1
R:R:F168 R:R:M177 4.98 0 No Yes 5 5 1 2
L:L:?1 R:R:F168 31.8 3 Yes No 0 5 0 1
R:R:M174 R:R:R169 7.44 0 No No 3 4 1 2
R:R:M174 R:R:Y254 3.59 0 No Yes 3 4 1 2
L:L:?1 R:R:M174 6.15 3 Yes No 0 3 0 1
R:R:L246 R:R:N250 4.12 3 Yes No 6 5 1 1
R:R:G267 R:R:L246 5.13 0 No Yes 6 6 2 1
R:R:I268 R:R:L246 5.71 3 Yes Yes 5 6 1 1
L:L:?1 R:R:L246 5.16 3 Yes Yes 0 6 0 1
L:L:?1 R:R:N250 16.22 3 Yes No 0 5 0 1
R:R:L253 R:R:V259 8.94 0 No Yes 4 4 1 2
L:L:?1 R:R:L253 4.3 3 Yes No 0 4 0 1
L:L:?1 R:R:L264 7.74 3 Yes No 0 4 0 1
R:R:H272 R:R:I268 5.3 3 Yes Yes 7 5 1 1
L:L:?1 R:R:I268 14.19 3 Yes Yes 0 5 0 1
L:L:?1 R:R:H272 10.39 3 Yes Yes 0 7 0 1
L:L:?1 R:R:I72 1.77 3 Yes No 0 5 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8YH5_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.59
Number of Linked Nodes 254
Number of Links 277
Number of Hubs 35
Number of Links mediated by Hubs 139
Number of Communities 12
Number of Nodes involved in Communities 50
Number of Links involved in Communities 60
Path Summary
Number Of Nodes in MetaPath 55
Number Of Links MetaPath 54
Number of Shortest Paths 41239
Length Of Smallest Path 3
Average Path Length 16.5826
Length of Longest Path 35
Minimum Path Strength 1.255
Average Path Strength 7.03766
Maximum Path Strength 22.995
Minimum Path Correlation 0.7
Average Path Correlation 0.92322
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.7037
Average % Of Corr. Nodes 37.2217
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 43.1048
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• protein-containing complex binding   • binding   • protein binding   • enzyme binding   • GTPase binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • phospholipase C-activating G protein-coupled receptor signaling pathway   • cell communication   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • multicellular organismal process   • system process   • sensory perception of chemical stimulus
Gene OntologyBiological Process• cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • phospholipase C-activating G protein-coupled receptor signaling pathway   • cell communication   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • cell population proliferation   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • response to oxygen-containing compound   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to monoamine stimulus   • response to chemical   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to alcohol   • response to hormone   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • cellular anatomical structure   • membrane   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • plasma membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cell periphery   • cytoplasmic side of plasma membrane   • GTPase complex
Gene OntologyCellular Component• cellular anatomical structure   • membrane   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • plasma membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cell periphery   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • membrane-bounded organelle   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • neuron projection   • photoreceptor disc membrane   • photoreceptor outer segment   • plasma membrane bounded cell projection   • cell projection   • photoreceptor cell cilium   • organelle   • organelle membrane   • synapse   • cell junction   • intracellular anatomical structure   • cytoplasm   • protein binding   • binding   • G-protein beta-subunit binding   • cation binding   • magnesium ion binding   • ion binding   • metal ion binding   • small molecule binding   • guanyl nucleotide binding   • nucleotide binding   • GDP binding   • guanyl ribonucleotide binding   • purine ribonucleotide binding   • nucleoside phosphate binding   • purine nucleotide binding   • anion binding   • heterocyclic compound binding   • carbohydrate derivative binding   • ribonucleotide binding   • G protein-coupled serotonin receptor binding   • signaling receptor binding   • G protein-coupled receptor binding   • protein-containing complex binding   • G-protein beta/gamma-subunit complex binding   • GTP binding   • purine ribonucleoside triphosphate binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • fibroblast proliferation   • cell population proliferation   • cellular process   • cellular response to nitrogen compound   • cellular response to stimulus   • response to dopamine   • regulation of cellular process   • response to stimulus   • signaling   • cellular response to dopamine   • response to monoamine   • cell communication   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • signal transduction   • regulation of biological process   • G protein-coupled dopamine receptor signaling pathway   • biological regulation   • response to oxygen-containing compound   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to monoamine stimulus   • response to chemical   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to alcohol   • response to hormone   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • regulation of cytoskeleton organization   • regulation of cellular component organization   • microtubule cytoskeleton organization   • regulation of mitotic spindle organization   • mitotic cell cycle   • cellular component organization   • cell cycle   • cellular component organization or biogenesis   • regulation of cell cycle   • microtubule cytoskeleton organization involved in mitosis   • spindle organization   • cell cycle process   • regulation of cell cycle process   • regulation of microtubule-based process   • regulation of spindle organization   • regulation of organelle organization   • mitotic spindle organization   • organelle organization   • mitotic cell cycle process   • microtubule-based process   • cytoskeleton organization   • regulation of microtubule cytoskeleton organization   • positive regulation of protein localization to cell periphery   • regulation of localization   • protein localization to cell periphery   • regulation of protein localization   • positive regulation of biological process   • positive regulation of protein localization to cell cortex   • regulation of protein localization to cell periphery   • localization   • regulation of protein localization to cell cortex   • macromolecule localization   • positive regulation of protein localization   • intracellular protein localization   • protein localization to cell cortex   • cell division   • cellular response to forskolin   • response to forskolin   • extracellular exosome   • extracellular vesicle   • extracellular organelle   • extracellular region   • extracellular space   • vesicle   • extracellular membrane-bounded organelle   • midbody   • cell cortex   • intracellular organelle   • centrosome   • microtubule organizing center   • cytoskeleton   • membraneless organelle   • intracellular membraneless organelle   • microtubule cytoskeleton   • nucleus   • intracellular membrane-bounded organelle   • identical protein binding   • host cell surface binding   • host cell surface receptor binding   • molecular transducer activity   • G protein-coupled receptor activity   • transmembrane signaling receptor activity   • signaling receptor activity   • G protein-coupled adenosine receptor activity   • bioluminescence   • metabolic process   • generation of precursor metabolites and energy   • viral process   • fusion of virus membrane with host endosome membrane   • membrane fusion involved in viral entry into host cell   • membrane organization   • membrane fusion   • fusion of virus membrane with host plasma membrane   • virion attachment to host cell   • biological process involved in interspecies interaction between organisms   • adhesion of symbiont to host cell   • viral life cycle   • adhesion of symbiont to host   • biological process involved in interaction with host   • biological process involved in symbiotic interaction   • non-lytic viral release   • viral budding   • virion assembly   • exit from host cell   • viral budding from plasma membrane   • viral release from host cell   • import into cell   • receptor-mediated endocytosis of virus by host cell   • transport   • establishment of localization   • vesicle-mediated transport   • symbiont entry into host cell   • clathrin-dependent endocytosis   • symbiont entry into host   • clathrin-dependent endocytosis of virus by host cell   • receptor-mediated endocytosis   • endocytosis   • endocytosis involved in viral entry into host cell   • virion component   • virion membrane   • viral membrane   • viral envelope   • host cell plasma membrane   • host cellular component   • host cell part   • host cell membrane   • other organism part   • somatodendritic compartment   • dendrite   • dendritic tree
SCOP2Domain Identifier• WD40 repeat-like   • Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• WD40 repeat-like   • Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeZIR
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeZIR
NameRiboprine
Synonyms
  • Riboprine
  • IPA
  • riboprina
Identifier
FormulaC15 H21 N5 O4
Molecular Weight335.358
SMILES
PubChem24405
Formal Charge0
Total Atoms45
Total Chiral Atoms4
Total Bonds47
Total Aromatic Bonds10

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP0DMS8
Sequence
>8YH5_nogp_Chain_R
SVTYITEII GLCAIVGNV LVIVVKLNP SLQTTTFYF IVSLALADI 
AVGVLVMPL AIVSLGTIH FYSCLFMTC LLIFTHASI MSLLAIAVD 
RYLRVKLTV RYRVTTRRI WLALGLCWL VSFLVGLTP MFGWNMKLS 
NTFLCFSVM RMDYMVYFS FWIPLVVMC AIYDIFYII RNLEFKTAK 
SLLVLFLFA LWLPLSIIN CIYFGVPQV LYGILLSHA NSMMNPIVY 
AYKIKKFKE TYLLIWTSV LWIVMRQSA DELPRRFLL VFRLCLDQT 
L


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8X16ANucleotideAdenosineA3AHomo sapiensPiclidenoson-Gi1/β1/γ23.292024-04-24doi.org/10.1038/s41467-024-47207-6
8X16 (No Gprot) ANucleotideAdenosineA3AHomo sapiensPiclidenoson-3.292024-04-24doi.org/10.1038/s41467-024-47207-6
8X17ANucleotideAdenosineA3AHomo sapiensNamodenoson-Gi1/β1/γ23.192024-04-24doi.org/10.1038/s41467-024-47207-6
8X17 (No Gprot) ANucleotideAdenosineA3AHomo sapiensNamodenoson-3.192024-04-24doi.org/10.1038/s41467-024-47207-6
8YH0ANucleotideAdenosineA3AHomo sapiensNECA-Gi1/β1/γ22.862024-11-06doi.org/10.1038/s41467-024-53473-1
8YH0 (No Gprot) ANucleotideAdenosineA3AHomo sapiensNECA-2.862024-11-06doi.org/10.1038/s41467-024-53473-1
8YH2ANucleotideAdenosineA3AHomo sapiensAdenosine-Gi1/β1/γ23.272024-11-06doi.org/10.1038/s41467-024-53473-1
8YH2 (No Gprot) ANucleotideAdenosineA3AHomo sapiensAdenosine-3.272024-11-06doi.org/10.1038/s41467-024-53473-1
8YH3ANucleotideAdenosineA3AHomo sapiensN-methyladenosine-Gi1/β1/γ23.42024-11-06doi.org/10.1038/s41467-024-53473-1
8YH3 (No Gprot) ANucleotideAdenosineA3AHomo sapiensN-methyladenosine-3.42024-11-06doi.org/10.1038/s41467-024-53473-1
8YH5ANucleotideAdenosineA3AHomo sapiensRiboprine-Gi1/β1/γ23.662024-11-06doi.org/10.1038/s41467-024-53473-1
8YH5 (No Gprot) ANucleotideAdenosineA3AHomo sapiensRiboprine-3.662024-11-06doi.org/10.1038/s41467-024-53473-1
8YH6ANucleotideAdenosineA3AHomo sapiensNamodenoson-Gi1/β1/γ23.622024-11-06doi.org/10.1038/s41467-024-53473-1
8YH6 (No Gprot) ANucleotideAdenosineA3AHomo sapiensNamodenoson-3.622024-11-06doi.org/10.1038/s41467-024-53473-1
9EHSANucleotideAdenosineA3AHomo sapiensLUF7602--3.22025-08-20doi.org/10.1038/s41467-025-62872-x
9EBIANucleotideAdenosineA3AHomo sapiensPiclidenoson-chim(NtGi1L-Gs-CtGi1)/β1/γ23.62025-08-20doi.org/10.1038/s41467-025-62872-x
9EBI (No Gprot) ANucleotideAdenosineA3AHomo sapiensPiclidenoson-3.62025-08-20doi.org/10.1038/s41467-025-62872-x
9EBHANucleotideAdenosineA3AHomo sapiensAdenosine-Gi1/β1/γ23.62025-08-20doi.org/10.1038/s41467-025-62872-x
9EBH (No Gprot) ANucleotideAdenosineA3AHomo sapiensAdenosine-3.62025-08-20doi.org/10.1038/s41467-025-62872-x




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