Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:P196 3.652517
2R:R:Q218 5.365445
3R:R:N219 4.92667617
4R:R:P220 4.86418
5R:R:F222 6.43833616
6R:R:H227 6.5547
7R:R:Y262 8.77409
8R:R:F268 7.344508
9R:R:F274 4.1625409
10R:R:F275 6.5325405
11R:R:W281 5.76429717
12R:R:F285 5.9425458
13R:R:R296 6.4975426
14R:R:D298 8.47427
15R:R:T300 5.842527
16R:R:R302 9.4325406
17R:R:P306 3.145405
18R:R:E310 6.196508
19R:R:Y322 5.83667619
20R:R:Y323 5.26408
21R:R:W331 12.8333639
22R:R:F332 5.43479
23R:R:Y337 6.57467
24R:R:W339 9.825489
25R:R:F343 7.0075489
26R:R:P352 4.29407
27R:R:F360 5.805469
28R:R:H361 9.115439
29R:R:W365 8.24439
30R:R:I375 7.685417
31R:R:D384 7.34518
32R:R:S387 4.445418
33R:R:Y394 8.0775415
34R:R:Y397 6.795413
35R:R:Y399 10.57415
36R:R:R400 6.41419
37R:R:F403 6.01518
38R:R:L437 3.79406
39R:R:L452 3.5975488
40R:R:H470 6.5225417
41R:R:F474 5.384516
42R:R:F484 5.33416
43R:R:F526 6.185409
44R:R:M532 5.565478
45R:R:W535 12.5975409
46W:W:?1 7.541431410
47W:W:?2 7.68571710
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:N219 R:R:P220 10.36344.89YesYes178
2R:R:N219 W:W:?1 18.23363.24YesYes170
3R:R:F391 W:W:?1 88.53225.74NoYes180
4R:R:F391 R:R:Y322 1003.09NoYes189
5R:R:F318 R:R:Y322 37.20586.19NoYes199
6R:R:F318 R:R:V381 37.225513.11NoNo098
7R:R:C390 R:R:V381 28.90623.42NoNo098
8R:R:C314 R:R:C390 27.18357.28NoNo099
9R:R:C314 R:R:R302 26.31486.96NoYes096
10R:R:R296 R:R:R302 16.1554.26YesYes066
11R:R:F222 R:R:V386 11.23959.18YesNo065
12R:R:H227 R:R:V386 29.40699.69YesNo075
13R:R:D384 R:R:V386 20.25825.84YesNo085
14R:R:H227 R:R:H231 14.82255.97YesNo077
15R:R:S387 R:R:W281 21.79933.71YesYes187
16R:R:S387 W:W:?1 22.9113.54YesYes180
17R:R:M525 W:W:?1 20.059413.33NoYes150
18R:R:M525 R:R:W281 19.40665.82NoYes157
19R:R:H231 R:R:R290 12.719318.05NoNo079
20R:R:F526 R:R:W281 17.75756.01YesYes097
21R:R:F526 R:R:T241 11.43837.78YesNo097
22R:R:M326 R:R:Y322 99.7359.58NoYes089
23R:R:M326 R:R:P368 99.45033.35NoNo089
24R:R:P368 R:R:Y323 98.82215.56NoYes098
25R:R:W365 R:R:Y323 98.11538.68YesYes098
26R:R:W331 R:R:W365 58.109412.18YesYes399
27R:R:W331 R:R:Y269 12.194214.47YesNo398
28R:R:F268 R:R:Y269 20.99446.19YesNo088
29R:R:H361 R:R:W365 38.65138.46YesYes399
30R:R:H361 R:R:Y269 10.26049.8YesNo398
31R:R:F252 R:R:F268 11.482513.93NoYes098
32R:R:F252 R:R:V536 10.06413.93NoNo098
33R:R:H361 R:R:Y262 28.65357.62YesYes099
34R:R:V334 R:R:W331 29.9324.9NoYes079
35R:R:F360 R:R:V334 29.30879.18YesNo097
36R:R:F360 R:R:Y262 27.42896.19YesYes099
37R:R:F360 R:R:Y337 54.10194.13YesYes697
38R:R:T341 R:R:Y337 11.49234.99NoYes067
39R:R:I266 R:R:W331 28.31739.4NoYes089
40R:R:I266 R:R:L335 26.97247.14NoNo088
41R:R:L335 R:R:W339 26.277919.36NoYes089
42R:R:W339 R:R:W535 18.45449.37YesYes099
43R:R:F455 R:R:W535 15.467923.05NoYes089
44R:R:V321 R:R:W281 11.47276.13NoYes087
45R:R:F418 R:R:Y337 42.673412.38NoYes087
46R:R:F418 R:R:V414 12.91813.93NoNo085
47R:R:V333 R:R:V414 10.08123.21NoNo095
48R:R:F418 R:R:Y417 29.37256.19NoNo085
49R:R:R421 R:R:Y417 28.015414.4NoNo075
50R:R:H340 R:R:R421 23.91476.77NoNo077
51R:R:G422 R:R:H340 21.15633.18NoNo087
52R:R:G422 R:R:T425 19.76983.64NoNo087
53R:R:I429 R:R:T425 18.37843.04NoNo077
54R:R:I429 R:R:L437 14.32921.43NoYes076
55R:R:N219 W:W:?2 10.64814.32YesYes170
56R:R:F222 W:W:?1 15.98085.74YesYes160
57R:R:D384 W:W:?1 10.30711.73YesYes180
58R:R:F391 R:R:Y394 11.33525.16NoYes185
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:P196 R:R:P220 3.9 1 Yes Yes 7 8 2 2
R:R:F484 R:R:P196 4.33 1 Yes Yes 6 7 1 2
R:R:Y207 W:W:?2 21.19 0 No Yes 7 0 1 0
R:R:I215 R:R:M301 5.83 1 No No 5 4 1 1
R:R:I215 W:W:?2 5.61 1 No Yes 5 0 1 0
R:R:N219 R:R:P220 4.89 1 Yes Yes 7 8 1 2
R:R:L221 R:R:N219 8.24 0 No Yes 6 7 2 1
R:R:F222 R:R:N219 4.83 1 Yes Yes 6 7 2 1
R:R:D384 R:R:N219 4.04 1 Yes Yes 8 7 2 1
R:R:N219 W:W:?1 3.24 1 Yes Yes 7 0 1 2
R:R:N219 W:W:?2 4.32 1 Yes Yes 7 0 1 0
R:R:F484 R:R:P220 4.33 1 Yes Yes 6 8 1 2
R:R:F222 W:W:?1 5.74 1 Yes Yes 6 0 2 2
R:R:L303 R:R:M301 5.65 0 No No 3 4 2 1
R:R:M301 W:W:?2 4.44 1 No Yes 4 0 1 0
R:R:D384 W:W:?1 11.73 1 Yes Yes 8 0 2 2
R:R:E481 R:R:R482 12.79 0 No No 5 3 1 2
R:R:F484 R:R:V488 7.87 1 Yes No 6 6 1 2
R:R:F484 W:W:?2 4.79 1 Yes Yes 6 0 1 0
R:R:R485 W:W:?2 12.41 0 No Yes 5 0 1 0
R:R:D486 R:R:R485 2.38 0 No No 4 5 2 1
R:R:E481 W:W:?2 1.04 0 No Yes 5 0 1 0

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:N219 R:R:P220 4.89 1 Yes Yes 7 8 1 2
R:R:L221 R:R:N219 8.24 0 No Yes 6 7 2 1
R:R:F222 R:R:N219 4.83 1 Yes Yes 6 7 1 1
R:R:D384 R:R:N219 4.04 1 Yes Yes 8 7 1 1
R:R:N219 W:W:?1 3.24 1 Yes Yes 7 0 1 0
R:R:N219 W:W:?2 4.32 1 Yes Yes 7 0 1 2
R:R:L221 R:R:P513 8.21 0 No No 6 8 2 2
R:R:E226 R:R:F222 7 0 No Yes 8 6 2 1
R:R:F222 R:R:V386 9.18 1 Yes No 6 5 1 2
R:R:F222 R:R:P513 7.22 1 Yes No 6 8 1 2
R:R:E518 R:R:F222 4.66 1 No Yes 7 6 1 1
R:R:F222 W:W:?1 5.74 1 Yes Yes 6 0 1 0
R:R:S387 R:R:W281 3.71 1 Yes Yes 8 7 1 2
R:R:I389 R:R:W281 11.74 1 No Yes 9 7 2 2
R:R:M525 R:R:W281 5.82 1 No Yes 5 7 1 2
R:R:F391 R:R:Y322 3.09 1 No Yes 8 9 1 2
R:R:L325 R:R:M525 4.24 1 No No 5 5 1 1
R:R:L325 W:W:?1 4.35 1 No Yes 5 0 1 0
R:R:D382 R:R:Y394 6.9 0 No Yes 9 5 2 1
R:R:D384 R:R:V386 5.84 1 Yes No 8 5 1 2
R:R:D384 R:R:S387 5.89 1 Yes Yes 8 8 1 1
R:R:D384 R:R:Y394 9.2 1 Yes Yes 8 5 1 1
R:R:D384 W:W:?1 11.73 1 Yes Yes 8 0 1 0
R:R:I389 R:R:S387 4.64 1 No Yes 9 8 2 1
R:R:S387 W:W:?1 3.54 1 Yes Yes 8 0 1 0
R:R:F391 R:R:Y394 5.16 1 No Yes 8 5 1 1
R:R:F391 W:W:?1 5.74 1 No Yes 8 0 1 0
R:R:Y394 W:W:?1 11.05 1 Yes Yes 5 0 1 0
R:R:R400 R:R:Y397 3.09 1 Yes Yes 9 3 1 2
R:R:F474 R:R:Y397 12.38 1 Yes Yes 6 3 2 2
R:R:H470 R:R:R400 5.64 1 Yes Yes 7 9 1 1
R:R:F474 R:R:R400 6.41 1 Yes Yes 6 9 2 1
R:R:R400 W:W:?1 10.5 1 Yes Yes 9 0 1 0
R:R:H470 R:R:L405 11.57 1 Yes No 7 8 1 2
R:R:T466 W:W:?1 6.95 0 No Yes 8 0 1 0
R:R:C469 R:R:N521 7.87 0 No No 7 8 2 1
R:R:H470 R:R:N521 3.83 1 Yes No 7 8 1 1
R:R:H470 W:W:?1 5.05 1 Yes Yes 7 0 1 0
R:R:D473 R:R:N476 5.39 1 No No 8 6 1 2
R:R:D473 R:R:E518 3.9 1 No No 8 7 1 1
R:R:D473 W:W:?1 3.2 1 No Yes 8 0 1 0
R:R:E518 W:W:?1 11.45 1 No Yes 7 0 1 0
R:R:N521 W:W:?1 9.71 1 No Yes 8 0 1 0
R:R:M525 W:W:?1 13.33 1 No Yes 5 0 1 0
R:R:A524 R:R:T466 1.68 0 No No 7 8 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 6XBM_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.09
Number of Linked Nodes 302
Number of Links 339
Number of Hubs 47
Number of Links mediated by Hubs 174
Number of Communities 9
Number of Nodes involved in Communities 66
Number of Links involved in Communities 93
Path Summary
Number Of Nodes in MetaPath 59
Number Of Links MetaPath 58
Number of Shortest Paths 69376
Length Of Smallest Path 3
Average Path Length 14.8302
Length of Longest Path 33
Minimum Path Strength 1.505
Average Path Strength 6.77513
Maximum Path Strength 20.44
Minimum Path Correlation 0.7
Average Path Correlation 0.937069
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.16667
Average % Of Corr. Nodes 54.3509
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 46.3149
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases   • G protein-coupled receptor-like
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases   • G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeCO1
PDB ResiduesW:W:?1 W:W:?2
Environment DetailsOpen EMBL-EBI Page
CodeCO1
Name17-[3-(3,3-DIMETHYL-OXIRANYL)-1-METHYL-PROPYL]-10,13-DIMETHYL-2,3,4,7,8,9,10,11,12,13,14,15,16,17-TETRADECAHYDRO-1H-CYCLOPENTA[A]PHENANTHREN-3-OL
Synonyms24,25(S)-EPOXYCHOLESTEROL
Identifier
FormulaC27 H44 O2
Molecular Weight400.637
SMILES
PubChem3247059
Formal Charge0
Total Atoms73
Total Chiral Atoms9
Total Bonds77
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ99835
Sequence
>6XBM_nogp_Chain_R
QCEVPLVRT DNPKSWYED VEGCGIQCQ NPLFTEAEH QDMHSYIAA 
FGAVTGLCT LFTLATFVA DWRNSNRYP AVILFYVNA CFFVGSIGW 
LAQFMDGAR REIVCRADG TMRLGEPTS NETLSCVII FVIVYYALM 
AGVVWFVVL TYAWHTSFK ALGTTYQPL SGKTSYFHL LTWSLPFVL 
TVAILAVAQ VDGDSVSGI CFVGYKNYR YRAGFVLAP IGLVLIVGG 
YFLIRGVMT LFSIKSNHP GLLSEKAAS KINETMLRL GIFGFLAFG 
FVLITFSCH FYDFFNQAE WERSFRDYV LCQANVTIP SLLVEKINL 
FAMFGTGIA MSTWVWT


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
4N4WFProteinFrizzledSMOHomo sapiens-SANT-1-2.82014-01-22doi.org/10.1038/ncomms5355
6D32FProteinFrizzledSMOXenopus laevisCyclopamineCyclopamine-3.752018-05-23doi.org/10.1016/j.cell.2018.04.029
6D35FProteinFrizzledSMOXenopus laevis-Cholesterol-3.92018-05-23doi.org/10.1016/j.cell.2018.04.029
5L7DFProteinFrizzledSMOHomo sapiens-Cholesterol-3.22016-07-20doi.org/10.1038/nature18934
6O3CFProteinFrizzledSMOMus musculusSAG21kCholesterol-2.82019-07-03doi.org/10.1038/s41586-019-1355-4
6XBJFProteinFrizzledSMOHomo sapiens-CholesterolGi1/β1/γ23.882020-09-30doi.org/10.1038/s41589-020-0646-2
6XBJ (No Gprot) FProteinFrizzledSMOHomo sapiens-Cholesterol3.882020-09-30doi.org/10.1038/s41589-020-0646-2
6XBKFProteinFrizzledSMOHomo sapiens-CholesterolGi1/β1/γ23.242020-09-30doi.org/10.1038/s41589-020-0646-2
6XBK (No Gprot) FProteinFrizzledSMOHomo sapiens-Cholesterol3.242020-09-30doi.org/10.1038/s41589-020-0646-2
6XBLFProteinFrizzledSMOHomo sapiensSAGCholesterolGi1/β1/γ23.962020-09-30doi.org/10.1038/s41589-020-0646-2
6XBL (No Gprot) FProteinFrizzledSMOHomo sapiensSAGCholesterol3.962020-09-30doi.org/10.1038/s41589-020-0646-2
7ZI0FProteinFrizzledSMOHomo sapiensSAGCholesterol-32022-06-15doi.org/10.1126/sciadv.abm5563
6XBMFProteinFrizzledSMOHomo sapiens-5LWEGi1/β1/γ23.142020-09-30doi.org/10.1038/s41589-020-0646-2
6XBM (No Gprot) FProteinFrizzledSMOHomo sapiens-5LWE3.142020-09-30doi.org/10.1038/s41589-020-0646-2
6OT0FProteinFrizzledSMOHomo sapiens-25(S)-EpoxycholesterolGi1/β1/γ23.842019-06-12doi.org/10.1038/s41586-019-1286-0
6OT0 (No Gprot) FProteinFrizzledSMOHomo sapiens-25(S)-Epoxycholesterol3.842019-06-12doi.org/10.1038/s41586-019-1286-0
4JKVFProteinFrizzledSMOHomo sapiensTaladegib--2.452013-04-24doi.org/10.1038/nature12167
5L7IFProteinFrizzledSMOHomo sapiensVismodegib--3.32016-07-20doi.org/10.1038/nature18934
5V56FProteinFrizzledSMOHomo sapiensTC114--2.92017-05-24doi.org/10.1038/ncomms15383
5V57FProteinFrizzledSMOHomo sapiensTC114--32017-05-24doi.org/10.1038/ncomms15383
4O9RFProteinFrizzledSMOHomo sapiensCyclopamine--3.22014-03-05doi.org/10.1038/ncomms4309
4QIMFProteinFrizzledSMOHomo sapiensANTA XV--2.612014-07-23doi.org/10.1038/ncomms5355
4QINFProteinFrizzledSMOHomo sapiensSAG1.5--2.62014-07-23doi.org/10.1038/ncomms5355
8CXOFProteinFrizzledSMOMus musculus---3.72022-08-03doi.org/10.1038/s41467-022-32125-2




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 6XBM_nogp.zip



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.