Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:L79 4.315405
2R:R:L91 5.902575
3R:R:L92 6.34478
4R:R:S96 4.545406
5R:R:K105 8.8275424
6R:R:W109 7.405627
7R:R:W119 14.395409
8R:R:Y130 7.262527
9R:R:M131 5.5475405
10R:R:E140 5.2025485
11R:R:T150 3.3225407
12R:R:R151 6.365425
13R:R:E160 5.654114
14R:R:W163 6.89667628
15R:R:F166 7.00667606
16R:R:I185 4.4325444
17R:R:F187 9.87333646
18R:R:N202 7.44754125
19R:R:W206 5.684504
20R:R:Y207 6.442557
21R:R:F222 5.91143716
22R:R:H227 5.345617
23R:R:Y233 11.6625406
24R:R:Y262 7.07667609
25R:R:I266 5.71408
26R:R:F268 7.445408
27R:R:Y269 11.1525468
28R:R:W281 5.11667607
29R:R:F285 6.8854138
30R:R:R296 7.195126
31R:R:D298 5.395407
32R:R:F318 6.595419
33R:R:Y322 6.205619
34R:R:M326 4.7725418
35R:R:W331 13.7967669
36R:R:F332 5.14754169
37R:R:W339 10.11439
38R:R:H340 4.25407
39R:R:P352 2.9407
40R:R:F360 6.95754159
41R:R:H361 8.06469
42R:R:W365 8.8875469
43R:R:I375 6.115417
44R:R:D384 7.926518
45R:R:Y394 11.135415
46R:R:Y399 11.024175
47R:R:L426 3.42539
48R:R:L452 3.835438
49R:R:H470 8.59517
50R:R:F474 4.185406
51R:R:W480 12.145409
52R:R:F484 6.178556
53R:R:Q491 3.5025404
54R:R:N511 4.045404
55R:R:L515 5.4125405
56R:R:E518 7.88417
57R:R:N521 7.085418
58R:R:F526 5.54409
59R:R:I530 3.635407
60R:R:M532 5.6254168
61R:R:W535 12.63409
62W:W:?1 9.943331210
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:M131 R:R:Y85 16.0794.79YesNo059
2R:R:M131 R:R:T88 13.12259.03YesNo059
3R:R:P132 R:R:T88 12.75023.5NoNo099
4R:R:M131 R:R:Q99 20.84882.72YesNo059
5R:R:Q99 R:R:Y75 20.77885.64NoNo093
6R:R:H103 R:R:Y75 20.691213.07NoNo053
7R:R:I185 R:R:P84 10.66533.39YesNo444
8R:R:P84 R:R:Y85 11.58076.95NoNo049
9R:R:H103 R:R:V107 20.63426.92NoNo054
10R:R:L79 R:R:V107 20.49414.47YesNo054
11R:R:L106 R:R:L79 20.18758.3NoYes085
12R:R:L106 R:R:L126 20.07364.15NoNo089
13R:R:L126 R:R:W109 12.31666.83NoYes297
14R:R:N202 R:R:S205 12.8297.45YesNo1257
15R:R:L303 R:R:S205 51.15413NoNo037
16R:R:D382 R:R:L303 53.34414.07NoNo093
17R:R:D382 R:R:Y394 54.42610.34NoYes095
18R:R:Y394 W:W:?1 27.169218.7YesYes150
19R:R:F222 W:W:?1 61.184.86YesYes160
20R:R:F222 R:R:P513 54.72828.67YesNo068
21R:R:L221 R:R:P513 30.44546.57NoNo068
22R:R:F484 R:R:L221 29.15333.65YesNo066
23R:R:F484 R:R:Y207 21.15118.25YesYes567
24R:R:L197 R:R:Y207 10.14413.52NoYes097
25R:R:Q491 R:R:Y487 11.55884.51YesNo044
26R:R:I509 R:R:Y487 12.964812.09NoNo044
27R:R:I509 R:R:S483 17.13023.1NoNo047
28R:R:N511 R:R:S483 18.50125.96YesNo047
29R:R:N511 R:R:W480 22.56143.39YesYes049
30R:R:P513 R:R:W480 27.629128.38NoYes089
31R:R:R296 R:R:S205 37.21267.91YesNo1267
32R:R:C314 R:R:I293 10.11343.27NoNo098
33R:R:C314 R:R:E305 14.31836.08NoNo097
34R:R:E305 R:R:R302 22.491412.79NoNo076
35R:R:R296 R:R:R302 27.76493.2YesNo066
36R:R:F222 R:R:H227 11.6993.39YesYes167
37R:R:M525 W:W:?1 41.04074.23NoYes050
38R:R:M525 R:R:W281 39.28876.98NoYes057
39R:R:F526 R:R:W281 26.87146.01YesYes097
40R:R:F526 R:R:T241 24.0557.78YesNo097
41R:R:I530 R:R:T241 22.07094.56YesNo077
42R:R:F268 R:R:L249 11.03323.65YesNo086
43R:R:F268 R:R:Y269 46.9236.19YesYes088
44R:R:W331 R:R:Y269 26.801321.22YesYes698
45R:R:W331 R:R:W365 44.632317.81YesYes699
46R:R:W365 R:R:Y323 91.777.72YesNo098
47R:R:P368 R:R:Y323 92.48835.56NoNo098
48R:R:M326 R:R:P368 94.21843.35YesNo089
49R:R:M326 R:R:Y322 94.70024.79YesYes189
50R:R:F391 R:R:Y322 1006.19NoYes189
51R:R:F391 W:W:?1 72.664.86NoYes180
52R:R:H361 R:R:Y269 24.173310.89YesYes698
53R:R:H361 R:R:W365 45.23677.41YesYes699
54R:R:F252 R:R:V536 17.55072.62NoNo098
55R:R:F252 R:R:F268 30.349113.93NoYes098
56R:R:A264 R:R:F252 11.03322.77NoNo099
57R:R:I266 R:R:W331 27.33137.05YesYes089
58R:R:H361 R:R:Y262 26.60866.53YesYes099
59R:R:L353 R:R:Y262 11.86113.52NoYes089
60R:R:F360 R:R:Y262 16.90686.19YesYes099
61R:R:I266 R:R:L335 30.48495.71YesNo088
62R:R:L335 R:R:W339 29.661420.5NoYes089
63R:R:W339 R:R:W535 13.52119.37YesYes099
64R:R:G527 R:R:I530 20.78313.53NoYes057
65R:R:F462 R:R:G527 20.34953.01NoNo075
66R:R:F462 R:R:T528 19.08816.49NoNo077
67R:R:M532 R:R:T528 17.41493.01YesNo087
68R:R:F455 R:R:M532 11.09464.98NoYes1688
69R:R:F455 R:R:W535 11.729720.04NoYes089
70R:R:I375 R:R:Y322 12.45246.04YesYes179
71R:R:F360 R:R:Y337 11.78225.16YesNo1597
72R:R:F418 R:R:Y337 10.577714.44NoNo087
73R:R:F343 R:R:W339 16.28056.01NoYes399
74R:R:L353 R:R:P352 10.57771.64NoYes087
75R:R:F343 R:R:L426 15.55348.53NoYes399
76R:R:H470 R:R:L405 19.37289YesNo078
77R:R:H470 W:W:?1 21.580316.67YesYes170
78R:R:E518 W:W:?1 12.106315.86YesYes170
79R:R:F391 R:R:Y394 27.58095.16NoYes185
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:F222 R:R:N219 3.62 1 Yes No 6 7 1 2
R:R:D384 R:R:N219 8.08 1 Yes No 8 7 1 2
R:R:E226 R:R:F222 7 0 No Yes 8 6 2 1
R:R:F222 R:R:H227 3.39 1 Yes Yes 6 7 1 2
R:R:F222 R:R:V386 9.18 1 Yes No 6 5 1 2
R:R:F222 R:R:P513 8.67 1 Yes No 6 8 1 2
R:R:E518 R:R:F222 4.66 1 Yes Yes 7 6 1 1
R:R:F222 W:W:?1 4.86 1 Yes Yes 6 0 1 0
R:R:E226 R:R:L515 6.63 0 No Yes 8 5 2 2
R:R:H227 R:R:V386 8.3 1 Yes No 7 5 2 2
R:R:M525 R:R:W281 6.98 0 No Yes 5 7 1 2
R:R:F391 R:R:Y322 6.19 1 No Yes 8 9 1 2
R:R:L325 R:R:M525 5.65 0 No No 5 5 2 1
R:R:I408 R:R:V329 4.61 0 No No 7 6 1 2
R:R:D382 R:R:Y394 10.34 0 No Yes 9 5 2 1
R:R:D384 R:R:V386 4.38 1 Yes No 8 5 1 2
R:R:D384 R:R:S387 7.36 1 Yes No 8 8 1 1
R:R:D384 R:R:Y394 10.34 1 Yes Yes 8 5 1 1
R:R:D384 W:W:?1 9.47 1 Yes Yes 8 0 1 0
R:R:S387 W:W:?1 8.98 1 No Yes 8 0 1 0
R:R:F391 R:R:Y394 5.16 1 No Yes 8 5 1 1
R:R:F391 W:W:?1 4.86 1 No Yes 8 0 1 0
R:R:Y394 W:W:?1 18.7 1 Yes Yes 5 0 1 0
R:R:R400 W:W:?1 15.75 0 No Yes 9 0 1 0
R:R:H470 R:R:V404 4.15 1 Yes No 7 7 1 2
R:R:H470 R:R:L405 9 1 Yes No 7 8 1 2
R:R:I408 W:W:?1 4.27 0 No Yes 7 0 1 0
R:R:H470 R:R:T466 5.48 1 Yes No 7 8 1 1
R:R:N521 R:R:T466 4.39 1 Yes No 8 8 1 1
R:R:T466 W:W:?1 8.82 1 No Yes 8 0 1 0
R:R:C469 R:R:N521 9.45 0 No Yes 7 8 2 1
R:R:H470 R:R:N521 7.65 1 Yes Yes 7 8 1 1
R:R:H470 W:W:?1 16.67 1 Yes Yes 7 0 1 0
R:R:E518 R:R:L515 5.3 1 Yes Yes 7 5 1 2
R:R:E518 R:R:V517 5.7 1 Yes No 7 6 1 2
R:R:E518 W:W:?1 15.86 1 Yes Yes 7 0 1 0
R:R:N521 W:W:?1 6.85 1 Yes Yes 8 0 1 0
R:R:M525 W:W:?1 4.23 0 No Yes 5 0 1 0

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 6XBK_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.35
Number of Linked Nodes 428
Number of Links 472
Number of Hubs 62
Number of Links mediated by Hubs 244
Number of Communities 17
Number of Nodes involved in Communities 88
Number of Links involved in Communities 112
Path Summary
Number Of Nodes in MetaPath 80
Number Of Links MetaPath 79
Number of Shortest Paths 60146
Length Of Smallest Path 3
Average Path Length 13.1442
Length of Longest Path 29
Minimum Path Strength 1.32
Average Path Strength 6.97888
Maximum Path Strength 32.71
Minimum Path Correlation 0.7
Average Path Correlation 0.963145
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 5.26316
Average % Of Corr. Nodes 73.796
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 43.6729
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases   • G protein-coupled receptor-like
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases   • G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeCLR
PDB ResiduesW:W:?1
Environment DetailsOpen EMBL-EBI Page
CodeCLR
NameCholesterol
Synonyms
  • Cholesterin
  • Cholesterol
  • Cholest-5-en-3beta-ol
  • (3β,14β,17α)-cholest-5-en-3-ol
Identifier
FormulaC27 H46 O
Molecular Weight386.654
SMILES
PubChem5997
Formal Charge0
Total Atoms74
Total Chiral Atoms8
Total Bonds77
Total Aromatic Bonds0



This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
4JKVFProteinFrizzledSMOHomo sapiensTaladegib--2.452013-04-24doi.org/10.1038/nature12167
4N4WFProteinFrizzledSMOHomo sapiens-SANT-1-2.82014-01-22doi.org/10.1038/ncomms5355
4O9RFProteinFrizzledSMOHomo sapiensCyclopamine--3.22014-03-05doi.org/10.1038/ncomms4309
4QIMFProteinFrizzledSMOHomo sapiensANTA XV--2.612014-07-23doi.org/10.1038/ncomms5355
4QINFProteinFrizzledSMOHomo sapiensSAG1.5--2.62014-07-23doi.org/10.1038/ncomms5355
5L7DFProteinFrizzledSMOHomo sapiens-Cholesterol-3.22016-07-20doi.org/10.1038/nature18934
5L7IFProteinFrizzledSMOHomo sapiensVismodegib--3.32016-07-20doi.org/10.1038/nature18934
5V56FProteinFrizzledSMOHomo sapiensTC114--2.92017-05-24doi.org/10.1038/ncomms15383
5V57FProteinFrizzledSMOHomo sapiensTC114--32017-05-24doi.org/10.1038/ncomms15383
6D32FProteinFrizzledSMOXenopus laevisCyclopamineCyclopamine-3.752018-05-23doi.org/10.1016/j.cell.2018.04.029
6D35FProteinFrizzledSMOXenopus laevis-Cholesterol-3.92018-05-23doi.org/10.1016/j.cell.2018.04.029
6OT0FProteinFrizzledSMOHomo sapiens-25(S)-EpoxycholesterolGi1/β1/γ23.842019-06-12doi.org/10.1038/s41586-019-1286-0
6OT0 (No Gprot) FProteinFrizzledSMOHomo sapiens-25(S)-Epoxycholesterol3.842019-06-12doi.org/10.1038/s41586-019-1286-0
6O3CFProteinFrizzledSMOMus musculusSAG21kCholesterol-2.82019-07-03doi.org/10.1038/s41586-019-1355-4
6XBJFProteinFrizzledSMOHomo sapiens-CholesterolGi1/β1/γ23.882020-09-30doi.org/10.1038/s41589-020-0646-2
6XBJ (No Gprot) FProteinFrizzledSMOHomo sapiens-Cholesterol3.882020-09-30doi.org/10.1038/s41589-020-0646-2
6XBKFProteinFrizzledSMOHomo sapiens-CholesterolGi1/β1/γ23.242020-09-30doi.org/10.1038/s41589-020-0646-2
6XBK (No Gprot) FProteinFrizzledSMOHomo sapiens-Cholesterol3.242020-09-30doi.org/10.1038/s41589-020-0646-2
6XBLFProteinFrizzledSMOHomo sapiensSAGCholesterolGi1/β1/γ23.962020-09-30doi.org/10.1038/s41589-020-0646-2
6XBL (No Gprot) FProteinFrizzledSMOHomo sapiensSAGCholesterol3.962020-09-30doi.org/10.1038/s41589-020-0646-2
6XBMFProteinFrizzledSMOHomo sapiens-25(S)-EpoxycholesterolGi1/β1/γ23.142020-09-30doi.org/10.1038/s41589-020-0646-2
6XBM (No Gprot) FProteinFrizzledSMOHomo sapiens-25(S)-Epoxycholesterol3.142020-09-30doi.org/10.1038/s41589-020-0646-2
7ZI0FProteinFrizzledSMOHomo sapiensSAGCholesterol-32022-06-15doi.org/10.1126/sciadv.abm5563
8CXOFProteinFrizzledSMOMus musculus---3.72022-08-03doi.org/10.1038/s41467-022-32125-2




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Download 6XBK_nogp.zip



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