Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:C78 4.955449
2R:R:Y85 7.25409
3R:R:D95 3.436525
4R:R:K105 7.582524
5R:R:W109 6.934527
6R:R:W119 10.375409
7R:R:L125 5.7975407
8R:R:Y130 7.788527
9R:R:M131 3.73405
10R:R:K133 4.506566
11R:R:T150 6.6225407
12R:R:R151 7.464575
13R:R:W163 12.05578
14R:R:F166 7.968526
15R:R:I185 5.308544
16R:R:F187 10.182546
17R:R:N202 4.645415
18R:R:W206 8.43404
19R:R:Y207 10.45417
20R:R:E211 7.082505
21R:R:N219 7.568507
22R:R:F222 7.02606
23R:R:Y262 7.13439
24R:R:I266 5.1538
25R:R:Y269 7.53438
26R:R:W281 6.03833617
27R:R:F285 6.0125498
28R:R:I293 2.3325408
29R:R:R296 6.824516
30R:R:D298 7.565407
31R:R:R302 7.595416
32R:R:E305 8.045417
33R:R:P306 5.9025405
34R:R:C314 5.2025419
35R:R:F318 8.655419
36R:R:Y322 5.14519
37R:R:Y323 5.3675408
38R:R:W331 11.948539
39R:R:F332 5.4254119
40R:R:W339 9.1625409
41R:R:F360 6.9439
42R:R:H361 6.9525439
43R:R:L367 1.85405
44R:R:F391 7.462518
45R:R:Y394 9.386515
46R:R:K395 6.3875413
47R:R:R400 6.1475419
48R:R:G415 1.9025408
49R:R:I429 1.815407
50R:R:H433 4.38408
51R:R:F462 3.7375407
52R:R:I465 1.77405
53R:R:H470 8.174517
54R:R:F474 5.446516
55R:R:W480 13.995409
56R:R:F484 7.7525416
57R:R:N511 7.3575404
58R:R:K519 9.9825487
59R:R:W535 11.844509
60R:R:V536 5.4654108
61L:L:?1 9.47222910
62W:W:?1 10.5778910
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:M131 R:R:Y85 12.7483.59YesYes059
2R:R:M131 R:R:Y130 17.50473.59YesYes057
3R:R:L92 R:R:V129 31.17634.47NoNo087
4R:R:L141 R:R:L92 12.88324.15NoNo078
5R:R:L92 R:R:R173 16.55343.64NoNo084
6R:R:Q123 R:R:W119 21.307919.71NoYes089
7R:R:F187 R:R:Q123 24.132121.08YesNo068
8R:R:F187 R:R:I185 28.72816.28YesYes464
9R:R:F166 R:R:V129 23.64973.93YesNo267
10R:R:W109 R:R:Y130 22.64856.75YesYes277
11R:R:L126 R:R:W109 25.88073.42NoYes097
12R:R:E211 R:R:V210 87.08574.28YesNo055
13R:R:C118 R:R:E211 1007.6NoYes095
14R:R:C118 R:R:C154 99.84257.28NoNo099
15R:R:C154 R:R:T150 99.35695.07NoYes097
16R:R:I122 R:R:T150 55.21757.6NoYes077
17R:R:I122 R:R:L125 28.83455.71NoYes077
18R:R:L125 R:R:L167 21.32014.15YesNo077
19R:R:F166 R:R:L167 30.762815.83YesNo067
20R:R:R151 R:R:T150 43.66829.06YesYes057
21R:R:L125 R:R:R151 29.47543.64YesYes075
22R:R:R151 R:R:W163 13.160412YesYes758
23R:R:L167 R:R:W163 11.10364.56NoYes078
24R:R:I122 R:R:L126 26.25439.99NoNo079
25R:R:Q192 R:R:W119 11.76114.38NoYes049
26R:R:G191 R:R:Q192 10.79313.29NoNo054
27R:R:E211 R:R:R117 18.15789.3YesNo055
28R:R:R117 R:R:W206 17.066820.99NoYes054
29R:R:L125 R:R:L146 36.92669.69YesNo076
30R:R:D172 R:R:R173 11.09583.57NoNo044
31R:R:L146 R:R:N180 36.06176.87NoNo065
32R:R:I185 R:R:V182 33.61354.61YesNo044
33R:R:N180 R:R:V182 35.2197.39NoNo054
34R:R:V210 R:R:Y207 84.44565.05NoYes157
35R:R:F484 R:R:Y207 87.46946.19YesYes167
36L:L:?1 R:R:F484 80.177913.94YesYes106
37R:R:F222 R:R:N219 18.39078.46YesYes067
38L:L:?1 R:R:N219 14.162812.94YesYes007
39R:R:W281 W:W:?1 14.38014.54YesYes170
40R:R:Y394 W:W:?1 14.89797.01YesYes150
41L:L:?1 R:R:Y394 73.42418.68YesYes105
42R:R:F252 R:R:F268 14.02428.57NoNo098
43R:R:F268 R:R:Y269 20.3715.16NoYes088
44R:R:W331 R:R:Y269 13.623914.47YesYes398
45R:R:W331 R:R:W365 45.278111.25YesNo399
46R:R:W365 R:R:Y323 60.40347.72NoYes098
47R:R:P368 R:R:Y323 61.80496.95NoYes098
48R:R:M326 R:R:P368 63.50693.35NoNo089
49R:R:M326 R:R:Y322 64.50155.99NoYes089
50R:R:F391 R:R:Y322 59.59514.13YesYes189
51R:R:F391 R:R:Y394 55.51028.25YesYes185
52R:R:H361 R:R:Y269 11.9745.44YesYes398
53R:R:H361 R:R:W365 14.768210.58YesNo399
54R:R:I266 R:R:W331 34.01827.05YesYes389
55R:R:I266 R:R:L335 32.58675.71YesNo088
56R:R:L335 R:R:W339 32.118821.64NoYes089
57R:R:W339 R:R:W535 13.793610.31YesYes099
58R:R:F455 R:R:W535 11.584817.04NoYes089
59R:R:R296 R:R:R302 19.25119.6YesYes166
60R:R:E305 R:R:R302 12.72813.96YesYes176
61R:R:E305 R:R:V381 14.48214.28YesNo178
62R:R:F318 R:R:V381 10.552515.73YesNo198
63R:R:F343 R:R:L346 10.47712.44NoNo096
64R:R:F343 R:R:W339 14.90352NoYes099
65R:R:F391 W:W:?1 13.548514.57YesYes180
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:F484 R:R:Y207 6.19 1 Yes Yes 6 7 1 2
R:R:V488 R:R:Y207 7.57 1 No Yes 6 7 2 2
R:R:I215 R:R:P220 5.08 0 No No 5 8 2 2
R:R:I215 R:R:M301 7.29 0 No No 5 4 2 1
R:R:N219 R:R:P220 6.52 0 Yes No 7 8 1 2
R:R:L221 R:R:N219 5.49 0 No Yes 6 7 2 1
R:R:F222 R:R:N219 8.46 0 Yes Yes 6 7 2 1
R:R:N219 R:R:V386 4.43 0 Yes No 7 5 1 2
L:L:?1 R:R:N219 12.94 1 Yes Yes 0 7 0 1
R:R:F484 R:R:P220 4.33 1 Yes No 6 8 1 2
R:R:L221 R:R:P513 6.57 0 No No 6 8 2 2
R:R:F222 R:R:P513 8.67 0 Yes No 6 8 2 2
R:R:F222 R:R:L515 3.65 0 Yes No 6 5 2 2
R:R:L303 R:R:M301 4.24 0 No No 3 4 2 1
L:L:?1 R:R:M301 5.71 1 Yes No 0 4 0 1
R:R:K395 R:R:Q380 4.07 1 Yes No 3 7 1 2
R:R:N396 R:R:Q380 11.88 1 No No 7 7 2 2
R:R:D382 R:R:Y394 6.9 0 No Yes 9 5 2 1
R:R:D384 R:R:V386 5.84 0 No No 8 5 2 2
R:R:D384 R:R:Y394 16.09 0 No Yes 8 5 2 1
R:R:F391 R:R:Y394 8.25 1 Yes Yes 8 5 2 1
R:R:F391 W:W:?1 14.57 1 Yes Yes 8 0 2 2
L:L:?1 R:R:Y394 8.68 1 Yes Yes 0 5 0 1
R:R:Y394 W:W:?1 7.01 1 Yes Yes 5 0 1 2
R:R:K395 R:R:N396 6.99 1 Yes No 3 7 1 2
R:R:E481 R:R:K395 4.05 1 No Yes 5 3 1 1
L:L:?1 R:R:K395 10.44 1 Yes Yes 0 3 0 1
R:R:D473 R:R:R400 10.72 0 No Yes 8 9 1 2
L:L:?1 R:R:D473 11.87 1 Yes No 0 8 0 1
R:R:N476 R:R:W480 25.99 0 No Yes 6 9 2 1
R:R:E481 R:R:Q477 6.37 1 No No 5 6 1 2
R:R:N511 R:R:W480 11.3 0 Yes Yes 4 9 2 1
R:R:P513 R:R:W480 14.86 0 No Yes 8 9 2 1
L:L:?1 R:R:W480 3.83 1 Yes Yes 0 9 0 1
L:L:?1 R:R:E481 8.92 1 Yes No 0 5 0 1
R:R:F484 R:R:V488 6.55 1 Yes No 6 6 1 2
L:L:?1 R:R:F484 13.94 1 Yes Yes 0 6 0 1
R:R:E518 R:R:L515 3.98 0 No No 7 5 1 2
R:R:E518 R:R:V517 7.13 0 No No 7 6 1 2
L:L:?1 R:R:E518 8.92 1 Yes No 0 7 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:I234 R:R:W281 7.05 0 No Yes 7 7 2 1
R:R:V321 R:R:W281 4.9 0 No Yes 8 7 2 1
R:R:I389 R:R:W281 5.87 0 No Yes 9 7 2 1
R:R:L522 R:R:W281 4.56 0 No Yes 7 7 2 1
R:R:M525 R:R:W281 9.31 1 No Yes 5 7 1 1
R:R:W281 W:W:?1 4.54 1 Yes Yes 7 0 1 0
R:R:F318 R:R:Y322 7.22 1 Yes Yes 9 9 2 2
R:R:F318 R:R:F391 6.43 1 Yes Yes 9 8 2 1
R:R:F318 R:R:V392 5.24 1 Yes No 9 9 2 2
R:R:F391 R:R:Y322 4.13 1 Yes Yes 8 9 1 2
R:R:L325 R:R:M525 4.24 0 No No 5 5 2 1
R:R:D382 R:R:Y394 6.9 0 No Yes 9 5 2 1
R:R:D384 R:R:Y394 16.09 0 No Yes 8 5 2 1
R:R:F391 R:R:V392 3.93 1 Yes No 8 9 1 2
R:R:F391 R:R:Y394 8.25 1 Yes Yes 8 5 1 1
R:R:F391 W:W:?1 14.57 1 Yes Yes 8 0 1 0
L:L:?1 R:R:Y394 8.68 1 Yes Yes 0 5 2 1
R:R:Y394 W:W:?1 7.01 1 Yes Yes 5 0 1 0
R:R:H470 R:R:R400 3.39 1 Yes Yes 7 9 1 2
R:R:F474 R:R:R400 7.48 1 Yes Yes 6 9 2 2
R:R:H470 R:R:V404 12.45 1 Yes No 7 7 1 1
R:R:V404 W:W:?1 5.94 1 No Yes 7 0 1 0
R:R:I408 R:R:V463 4.61 0 No No 7 7 1 2
R:R:I408 W:W:?1 9.96 0 No Yes 7 0 1 0
R:R:F462 R:R:T528 7.78 0 Yes No 7 7 2 1
R:R:H470 R:R:T466 6.85 1 Yes No 7 8 1 2
R:R:C469 R:R:N521 11.02 0 No No 7 8 2 1
R:R:F474 R:R:H470 7.92 1 Yes Yes 6 7 2 1
R:R:H470 W:W:?1 10.26 1 Yes Yes 7 0 1 0
R:R:N521 W:W:?1 5.48 0 No Yes 8 0 1 0
R:R:M525 W:W:?1 18.33 1 No Yes 5 0 1 0
R:R:T528 W:W:?1 19.11 0 No Yes 7 0 1 0

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 6XBL_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.35
Number of Linked Nodes 424
Number of Links 471
Number of Hubs 62
Number of Links mediated by Hubs 230
Number of Communities 11
Number of Nodes involved in Communities 73
Number of Links involved in Communities 96
Path Summary
Number Of Nodes in MetaPath 66
Number Of Links MetaPath 65
Number of Shortest Paths 156636
Length Of Smallest Path 3
Average Path Length 18.8752
Length of Longest Path 49
Minimum Path Strength 1.26
Average Path Strength 7.2894
Maximum Path Strength 20.425
Minimum Path Correlation 0.7
Average Path Correlation 0.963393
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 3.125
Average % Of Corr. Nodes 58.8708
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 47.8185
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• patched binding   • protein binding   • binding   • signaling receptor binding   • molecular transducer activity   • G protein-coupled receptor activity   • transmembrane signaling receptor activity   • signaling receptor activity   • protein serine/threonine kinase activity   • enzyme regulator activity   • catalytic activity, acting on a protein   • kinase activity   • cyclic nucleotide-dependent protein kinase activity   • protein kinase activity   • cAMP-dependent protein kinase activity   • transferase activity   • enzyme inhibitor activity   • protein kinase regulator activity   • phosphotransferase activity, alcohol group as acceptor   • transferase activity, transferring phosphorus-containing groups   • cAMP-dependent protein kinase regulator activity   • protein kinase inhibitor activity   • molecular function inhibitor activity   • molecular function regulator activity   • catalytic activity   • cAMP-dependent protein kinase inhibitor activity   • protein serine/threonine kinase inhibitor activity   • kinase inhibitor activity   • kinase regulator activity   • molecular sequestering activity   • protein sequestering activity   • sterol binding   • oxysterol binding   • steroid binding   • lipid binding   • protein kinase A catalytic subunit binding   • protein kinase A binding   • kinase binding   • enzyme binding   • protein kinase binding   • cellular response to stimulus   • response to sterol   • response to stimulus   • response to lipid   • response to alcohol   • response to oxygen-containing compound   • response to cholesterol   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to alcohol   • response to chemical   • cellular response to lipid   • cellular process   • cellular response to sterol
Gene OntologyBiological Process• cellular response to stimulus   • response to sterol   • response to stimulus   • response to lipid   • response to alcohol   • response to oxygen-containing compound   • response to cholesterol   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to alcohol   • response to chemical   • cellular response to lipid   • cellular process   • cellular response to sterol   • cellular response to cholesterol   • developmental process   • cellular developmental process   • cell differentiation   • cell fate specification   • cell fate commitment   • neuroblast proliferation   • multicellular organismal process   • cell population proliferation   • nervous system development   • generation of neurons   • neurogenesis   • multicellular organism development   • anatomical structure development   • neural precursor cell proliferation   • system development   • pattern specification process   • digestive system development   • tube development   • midgut development   • digestive tract development   • regulation of protein stability   • biological regulation   • regulation of biological quality   • protein stabilization   • central nervous system development   • multicellular organismal-level homeostasis   • homeostatic process   • homeostasis of number of cells within a tissue   • anatomical structure homeostasis   • tissue homeostasis   • homeostasis of number of cells   • mammary gland epithelial cell differentiation   • epithelium development   • mammary gland development   • gland development   • animal organ development   • tissue development   • epithelial cell differentiation   • mammary gland epithelium development   • regulation of biological process   • signaling   • cell-cell signaling   • epithelial-mesenchymal cell signaling   • cell communication   • muscle cell migration   • myoblast migration   • cell migration   • cell motility   • regulation of biosynthetic process   • regulation of cellular process   • positive regulation of biological process   • regulation of macromolecule metabolic process   • gene expression   • macromolecule biosynthetic process   • positive regulation of macromolecule biosynthetic process   • regulation of gene expression   • positive regulation of metabolic process   • biosynthetic process   • positive regulation of gene expression   • positive regulation of biosynthetic process   • regulation of macromolecule biosynthetic process   • metabolic process   • positive regulation of macromolecule metabolic process   • macromolecule metabolic process   • regulation of metabolic process   • positive regulation of cellular process   • anatomical structure morphogenesis   • pancreas morphogenesis   • pancreas development   • animal organ morphogenesis   • apoptotic process   • cell death   • programmed cell death   • regulation of protein modification process   • regulation of protein phosphorylation   • negative regulation of biological process   • negative regulation of phosphate metabolic process   • regulation of primary metabolic process   • regulation of phosphate metabolic process   • phosphate-containing compound metabolic process   • negative regulation of protein modification process   • negative regulation of cellular process   • protein metabolic process   • protein modification process   • phosphorus metabolic process   • negative regulation of protein metabolic process   • negative regulation of macromolecule metabolic process   • protein phosphorylation   • phosphorylation   • regulation of protein metabolic process   • negative regulation of metabolic process   • primary metabolic process   • negative regulation of protein phosphorylation   • macromolecule modification   • negative regulation of phosphorus metabolic process   • regulation of phosphorylation   • regulation of phosphorus metabolic process   • negative regulation of phosphorylation   • cerebellum morphogenesis   • cerebellar cortex morphogenesis   • head development   • hindbrain morphogenesis   • brain development   • cerebellar cortex development   • cerebellum development   • metencephalon development   • hindbrain development   • protein localization   • establishment of protein localization   • cellular localization   • nitrogen compound transport   • nucleocytoplasmic transport   • transport   • nuclear transport   • intracellular transport   • protein localization to nucleus   • establishment of localization   • localization   • import into nucleus   • establishment of protein localization to organelle   • protein transport   • cellular macromolecule localization   • macromolecule localization   • protein localization to organelle   • establishment of localization in cell   • protein import into nucleus   • intracellular protein transport   • epidermis development   • molting cycle process   • hair cycle   • epidermis morphogenesis   • morphogenesis of an epithelium   • tissue morphogenesis   • skin development   • skin epidermis development   • hair follicle development   • molting cycle   • hair cycle process   • hair follicle morphogenesis   • regulation of localization   • regulation of protein localization   • positive regulation of nucleocytoplasmic transport   • positive regulation of establishment of protein localization   • regulation of protein localization to nucleus   • positive regulation of protein transport   • regulation of protein import into nucleus   • positive regulation of intracellular transport   • regulation of intracellular transport   • regulation of transport   • positive regulation of protein localization to nucleus   • regulation of establishment of protein localization   • positive regulation of protein import into nucleus   • regulation of nucleocytoplasmic transport   • regulation of protein transport   • positive regulation of transport   • regulation of cellular localization   • positive regulation of protein localization   • regulation of intracellular protein transport   • positive regulation of intracellular protein transport   • embryo development ending in birth or egg hatching   • chordate embryonic development   • embryo development   • in utero embryonic development   • forebrain development   • pallium development   • cerebral cortex development   • telencephalon development   • astrocyte differentiation   • cell development   • astrocyte activation   • glial cell development   • astrocyte development   • gliogenesis   • response to stress   • defense response   • cell activation   • glial cell differentiation   • glial cell activation   • inflammatory response   • neuroinflammatory response   • brain morphogenesis   • forebrain morphogenesis   • neural tube development   • regionalization   • dorsal/ventral pattern formation   • dorsal/ventral neural tube patterning   • neural tube patterning   • endocrine system development   • type B pancreatic cell development   • epithelial cell development   • endocrine pancreas development   • enteroendocrine cell differentiation   • type B pancreatic cell differentiation   • RNA metabolic process   • negative regulation of RNA biosynthetic process   • RNA biosynthetic process   • nucleobase-containing compound metabolic process   • DNA-templated transcription   • nucleic acid biosynthetic process   • regulation of RNA metabolic process   • transcription by RNA polymerase II   • negative regulation of nucleobase-containing compound metabolic process   • regulation of nucleobase-containing compound metabolic process   • regulation of RNA biosynthetic process   • regulation of transcription by RNA polymerase II   • negative regulation of DNA-templated transcription   • negative regulation of transcription by RNA polymerase II   • nucleobase-containing compound biosynthetic process   • nucleic acid metabolic process   • negative regulation of biosynthetic process   • negative regulation of macromolecule biosynthetic process   • regulation of DNA-templated transcription   • negative regulation of RNA metabolic process   • multicellular organism growth   • developmental growth   • growth   • positive regulation of DNA-templated transcription   • positive regulation of nucleobase-containing compound metabolic process   • positive regulation of transcription by RNA polymerase II   • positive regulation of RNA metabolic process   • positive regulation of RNA biosynthetic process   • heart morphogenesis   • embryonic heart tube development   • tube morphogenesis   • embryonic heart tube morphogenesis   • heart looping   • determination of bilateral symmetry   • epithelial tube morphogenesis   • embryonic organ development   • determination of left/right symmetry   • specification of symmetry   • embryonic organ morphogenesis   • heart development   • embryonic morphogenesis   • determination of heart left/right asymmetry   • circulatory system development   • left/right pattern formation   • regulation of somatic stem cell population maintenance   • regulation of developmental process   • regulation of stem cell population maintenance   • stem cell population maintenance   • somatic stem cell population maintenance   • regulation of multicellular organismal process   • maintenance of cell number   • ossification   • osteoblast differentiation   • cell surface receptor signaling pathway   • smoothened signaling pathway   • signal transduction   • myotube cell development   • skeletal muscle fiber development   • skeletal muscle tissue development   • muscle cell differentiation   • myotube differentiation   • striated muscle tissue development   • muscle structure development   • skeletal muscle organ development   • striated muscle cell development   • muscle cell development   • muscle tissue development   • muscle organ development   • striated muscle cell differentiation   • cardiac atrium morphogenesis   • cardiac chamber morphogenesis   • cardiac atrium development   • cardiac septum development   • cardiac septum morphogenesis   • cardiac chamber development   • atrial septum morphogenesis   • atrial septum development   • mesonephric epithelium development   • kidney epithelium development   • branching morphogenesis of an epithelial tube   • nephron tubule morphogenesis   • regulation of kidney development   • regulation of branching involved in ureteric bud morphogenesis   • positive regulation of developmental process   • nephron development   • regulation of morphogenesis of a branching structure   • regulation of animal organ morphogenesis   • positive regulation of multicellular organismal process   • mesonephric tubule development   • renal tubule morphogenesis   • nephron morphogenesis   • nephron epithelium morphogenesis   • nephron tubule development   • renal system development   • ureteric bud morphogenesis   • positive regulation of morphogenesis of an epithelium   • branching involved in ureteric bud morphogenesis   • renal tubule development   • regulation of morphogenesis of an epithelium   • regulation of anatomical structure morphogenesis   • nephron epithelium development   • ureteric bud development   • mesonephros development   • kidney morphogenesis   • morphogenesis of a branching structure   • positive regulation of branching involved in ureteric bud morphogenesis   • mesonephric tubule morphogenesis   • kidney development   • morphogenesis of a branching epithelium   • odontogenesis of dentin-containing tooth   • odontogenesis   • negative regulation of programmed cell death   • regulation of apoptotic process   • regulation of programmed cell death   • negative regulation of apoptotic process   • ventral midline determination   • ventral midline development   • central nervous system neuron differentiation   • neuron differentiation   • positive regulation of cell communication   • positive regulation of signal transduction   • regulation of signal transduction   • positive regulation of response to stimulus   • positive regulation of smoothened signaling pathway   • regulation of smoothened signaling pathway   • regulation of signaling   • regulation of response to stimulus   • regulation of cell communication   • positive regulation of signaling   • regulation of cell differentiation   • regulation of epithelial cell differentiation   • negative regulation of cell differentiation   • regulation of multicellular organismal development   • negative regulation of epithelial cell differentiation   • negative regulation of developmental process   • spinal cord dorsal/ventral patterning   • spinal cord development   • spinal cord patterning   • positive regulation of mesenchymal cell proliferation   • positive regulation of cell population proliferation   • regulation of mesenchymal cell proliferation   • regulation of cell population proliferation   • mesenchymal cell proliferation   • positive regulation of epithelial cell proliferation   • regulation of epithelial cell proliferation   • epithelial cell proliferation   • diencephalon development   • thalamus development   • stem cell development   • neural crest cell differentiation   • neural crest cell development   • mesenchyme development   • mesenchymal cell migration   • stem cell differentiation   • ameboidal-type cell migration   • mesenchymal cell differentiation   • neural crest cell migration   • commissural neuron axon guidance   • axonogenesis   • cell projection organization   • plasma membrane bounded cell projection morphogenesis   • neuron projection development   • cell morphogenesis   • cellular component organization   • cell projection morphogenesis   • neuron projection morphogenesis   • cellular component organization or biogenesis   • plasma membrane bounded cell projection organization   • axon guidance   • axon development   • cell morphogenesis involved in neuron differentiation   • neuron projection guidance   • neuron development   • left/right axis specification   • axis specification   • regulation of heart morphogenesis   • blood vessel morphogenesis   • vasculogenesis   • vasculature development   • blood vessel development   • mesenchymal to epithelial transition involved in renal vesicle formation   • renal vesicle morphogenesis   • metanephric renal vesicle morphogenesis   • renal vesicle development   • metanephros development   • metanephric renal vesicle formation   • metanephros morphogenesis   • metanephric nephron development   • mesenchymal to epithelial transition involved in metanephric renal vesicle formation   • mesenchymal to epithelial transition involved in metanephros morphogenesis   • epithelial cell differentiation involved in kidney development   • mesenchymal to epithelial transition   • metanephric nephron morphogenesis   • cell differentiation involved in metanephros development   • cell differentiation involved in kidney development   • anatomical structure formation involved in morphogenesis   • renal vesicle formation   • positive regulation of locomotion   • regulation of cell motility   • positive regulation of cell migration   • regulation of locomotion   • positive regulation of cell motility   • regulation of cell migration   • locomotion   • regulation of growth   • regulation of developmental growth   • positive regulation of organ growth   • organ growth   • positive regulation of growth   • regulation of organ growth   • positive regulation of developmental growth   • regulation of multicellular organism growth   • positive regulation of multicellular organism growth   • dentate gyrus development   • hippocampus development   • limbic system development   • smooth muscle tissue development   • regulation of molecular function   • regulation of DNA binding   • regulation of binding   • negative regulation of binding   • negative regulation of molecular function   • negative regulation of DNA binding   • response to inositol   • negative regulation of gene expression   • regulation of hair cycle   • regulation of hair follicle development   • negative regulation of hair follicle development   • negative regulation of multicellular organismal process   • detection of stimulus   • contact inhibition   • detection of cell density   • detection of biotic stimulus   • response to biotic stimulus   • lateral mesoderm development   • determination of left/right asymmetry in lateral mesoderm   • mesoderm development   • dopaminergic neuron differentiation   • positive regulation of nervous system development   • regulation of neuroblast proliferation   • regulation of neurogenesis   • regulation of cell development   • regulation of nervous system development   • positive regulation of cell differentiation   • positive regulation of neurogenesis   • regulation of neural precursor cell proliferation   • positive regulation of cell development   • positive regulation of neural precursor cell proliferation   • positive regulation of neuroblast proliferation   • anterior/posterior pattern specification   • somite development   • extracellular exosome   • membrane-bounded organelle   • extracellular vesicle   • cellular anatomical structure   • extracellular organelle   • extracellular region   • organelle   • extracellular space   • vesicle   • extracellular membrane-bounded organelle   • cell projection   • ciliary tip   • cilium   • plasma membrane bounded cell projection
Gene OntologyCellular Component• extracellular exosome   • membrane-bounded organelle   • extracellular vesicle   • cellular anatomical structure   • extracellular organelle   • extracellular region   • organelle   • extracellular space   • vesicle   • extracellular membrane-bounded organelle   • cell projection   • ciliary tip   • cilium   • plasma membrane bounded cell projection   • somatodendritic compartment   • dendrite   • dendritic tree   • neuron projection   • intracellular anatomical structure   • membrane   • intracellular vesicle   • intracellular membrane-bounded organelle   • intracellular organelle   • cytoplasmic vesicle membrane   • bounding membrane of organelle   • cytoplasmic vesicle   • vesicle membrane   • endocytic vesicle membrane   • cytoplasm   • organelle membrane   • endocytic vesicle   • Golgi apparatus   • endomembrane system   • endoplasmic reticulum-Golgi intermediate compartment   • non-motile cilium   • 9+0 non-motile cilium   • microtubule organizing center   • cytoskeleton   • membraneless organelle   • centriole   • intracellular membraneless organelle   • microtubule cytoskeleton   • cell periphery   • plasma membrane   • ciliary membrane   • plasma membrane region   • cell projection membrane   • endosome   • late endosome   • endoplasmic reticulum   • D2 dopamine receptor binding   • protein binding   • binding   • signaling receptor binding   • G protein-coupled receptor binding   • dopamine receptor binding   • phosphorus-oxygen lyase activity   • enzyme regulator activity   • cyclase regulator activity   • molecular function regulator activity   • cyclase activity   • adenylate cyclase regulator activity   • lyase activity   • catalytic activity   • adenylate cyclase activity   • guanyl nucleotide binding   • GTP binding   • nucleotide binding   • guanyl ribonucleotide binding   • purine ribonucleotide binding   • purine ribonucleoside triphosphate binding   • nucleoside phosphate binding   • ion binding   • purine nucleotide binding   • anion binding   • heterocyclic compound binding   • carbohydrate derivative binding   • ribonucleotide binding   • small molecule binding   • cation binding   • magnesium ion binding   • metal ion binding   • GDP binding   • G protein-coupled serotonin receptor binding   • protein-containing complex binding   • G-protein beta/gamma-subunit complex binding   • pyrophosphatase activity   • GTPase activity   • G protein activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • adenylate cyclase-inhibiting serotonin receptor signaling pathway   • G protein-coupled serotonin receptor signaling pathway   • cell communication   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • response to hormone   • response to chemical   • response to endogenous stimulus   • response to peptide hormone   • response to oxygen-containing compound   • response to nitrogen compound   • cell division   • leukocyte migration   • immune system process   • mononuclear cell migration   • lymphocyte migration   • cell migration   • T cell migration   • cell motility   • regulation of steroid biosynthetic process   • regulation of cholesterol biosynthetic process   • regulation of cholesterol metabolic process   • steroid metabolic process   • regulation of lipid metabolic process   • sterol metabolic process   • positive regulation of biological process   • cholesterol metabolic process   • lipid biosynthetic process   • alcohol metabolic process   • regulation of primary metabolic process   • positive regulation of metabolic process   • regulation of small molecule metabolic process   • positive regulation of biosynthetic process   • positive regulation of lipid metabolic process   • small molecule metabolic process   • steroid biosynthetic process   • positive regulation of cellular process   • regulation of biosynthetic process   • secondary alcohol biosynthetic process   • regulation of alcohol biosynthetic process   • small molecule biosynthetic process   • regulation of steroid metabolic process   • cholesterol biosynthetic process   • positive regulation of cholesterol biosynthetic process   • primary metabolic process   • secondary alcohol metabolic process   • positive regulation of steroid biosynthetic process   • biosynthetic process   • sterol biosynthetic process   • positive regulation of lipid biosynthetic process   • regulation of sterol biosynthetic process   • alcohol biosynthetic process   • positive regulation of cholesterol metabolic process   • positive regulation of steroid metabolic process   • metabolic process   • regulation of lipid biosynthetic process   • positive regulation of small molecule metabolic process   • regulation of metabolic process   • positive regulation of alcohol biosynthetic process   • positive regulation of sterol biosynthetic process   • lipid metabolic process   • regulation of cytoskeleton organization   • regulation of cellular component organization   • microtubule cytoskeleton organization   • regulation of mitotic spindle organization   • mitotic cell cycle   • cellular component organization   • cell cycle   • cellular component organization or biogenesis   • regulation of cell cycle   • microtubule cytoskeleton organization involved in mitosis   • spindle organization   • cell cycle process   • regulation of cell cycle process   • regulation of microtubule-based process   • regulation of spindle organization   • regulation of organelle organization   • mitotic spindle organization   • organelle organization   • mitotic cell cycle process   • microtubule-based process   • cytoskeleton organization   • regulation of microtubule cytoskeleton organization   • protein localization   • positive regulation of protein localization to cell periphery   • regulation of localization   • protein localization to cell periphery   • cellular localization   • regulation of protein localization   • positive regulation of protein localization to cell cortex   • regulation of protein localization to cell periphery   • localization   • regulation of cellular localization   • regulation of protein localization to cell cortex   • cellular macromolecule localization   • macromolecule localization   • positive regulation of protein localization   • protein localization to cell cortex   • response to ketone   • response to prostaglandin   • response to lipid   • response to alcohol   • response to prostaglandin E   • cellular response to forskolin   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to alcohol   • response to forskolin   • cellular response to lipid   • cellular response to ketone   • midbody   • nucleus   • membrane-enclosed lumen   • nucleolus   • intracellular organelle lumen   • organelle lumen   • nuclear lumen   • cell cortex   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • centrosome   • centriolar satellite   • cytosol   • nucleoplasm   • vacuolar membrane   • lytic vacuole   • vacuole   • lytic vacuole membrane   • lysosomal membrane   • lysosome   • ciliary basal body   • enzyme binding   • GTPase binding   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • cell population proliferation   • cellular response to prostaglandin stimulus   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to hormone stimulus   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • phospholipase C-activating G protein-coupled receptor signaling pathway   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to monoamine stimulus   • synaptic signaling   • cellular response to acetylcholine   • cell-cell signaling   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • photoreceptor disc membrane   • photoreceptor outer segment   • photoreceptor cell cilium   • synapse   • cell junction   • G-protein beta-subunit binding   • fibroblast proliferation
SCOP2Domain Identifier• G protein-coupled receptor-like   • Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• G protein-coupled receptor-like   • Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeV0S
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeV0S
Name3-chloro-N-[trans-4-(methylamino)cyclohexyl]-N-{[3-(pyridin-4-yl)phenyl]methyl}-1-benzothiophene-2-carboxamide
Synonyms
Identifier
FormulaC28 H28 Cl N3 O S
Molecular Weight490.059
SMILES
PubChem
Formal Charge0
Total Atoms62
Total Chiral Atoms0
Total Bonds66
Total Aromatic Bonds22

CodeCLR
PDB ResiduesW:W:?1
Environment DetailsOpen EMBL-EBI Page
CodeCLR
NameCholesterol
Synonyms
  • Cholesterin
  • Cholesterol
  • Cholest-5-en-3beta-ol
  • (3β,14β,17α)-cholest-5-en-3-ol
Identifier
FormulaC27 H46 O
Molecular Weight386.654
SMILES
PubChem5997
Formal Charge0
Total Atoms74
Total Chiral Atoms8
Total Bonds77
Total Aromatic Bonds0



This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8CXOFProteinFrizzledSMOMus musculus---3.72022-08-0310.1038/s41467-022-32125-2
7ZI0FProteinFrizzledSMOHomo sapiensSAGCholesterol-32022-06-1510.1126/sciadv.abm5563
6XBMFProteinFrizzledSMOHomo sapiens-25(S)-EpoxycholesterolGi1/β1/γ23.142020-09-3010.1038/s41589-020-0646-2
6XBM (No Gprot) FProteinFrizzledSMOHomo sapiens-25(S)-Epoxycholesterol3.142020-09-3010.1038/s41589-020-0646-2
6XBLFProteinFrizzledSMOHomo sapiensSAGCholesterolGi1/β1/γ23.962020-09-3010.1038/s41589-020-0646-2
6XBL (No Gprot) FProteinFrizzledSMOHomo sapiensSAGCholesterol3.962020-09-3010.1038/s41589-020-0646-2
6XBKFProteinFrizzledSMOHomo sapiens-CholesterolGi1/β1/γ23.242020-09-3010.1038/s41589-020-0646-2
6XBK (No Gprot) FProteinFrizzledSMOHomo sapiens-Cholesterol3.242020-09-3010.1038/s41589-020-0646-2
6XBJFProteinFrizzledSMOHomo sapiens-CholesterolGi1/β1/γ23.882020-09-3010.1038/s41589-020-0646-2
6XBJ (No Gprot) FProteinFrizzledSMOHomo sapiens-Cholesterol3.882020-09-3010.1038/s41589-020-0646-2
6O3CFProteinFrizzledSMOMus musculusSAG21kCholesterol-2.82019-07-0310.1038/s41586-019-1355-4
6OT0FProteinFrizzledSMOHomo sapiens-25(S)-EpoxycholesterolGi1/β1/γ23.842019-06-1210.1038/s41586-019-1286-0
6OT0 (No Gprot) FProteinFrizzledSMOHomo sapiens-25(S)-Epoxycholesterol3.842019-06-1210.1038/s41586-019-1286-0
6D35FProteinFrizzledSMOXenopus laevis-Cholesterol-3.92018-05-2310.1016/j.cell.2018.04.029
6D32FProteinFrizzledSMOXenopus laevisCyclopamineCyclopamine-3.752018-05-2310.1016/j.cell.2018.04.029
5V57FProteinFrizzledSMOHomo sapiensTC114--32017-05-2410.1038/ncomms15383
5V56FProteinFrizzledSMOHomo sapiensTC114--2.92017-05-2410.1038/ncomms15383
5L7IFProteinFrizzledSMOHomo sapiensVismodegib--3.32016-07-2010.1038/nature18934
5L7DFProteinFrizzledSMOHomo sapiens-Cholesterol-3.22016-07-2010.1038/nature18934
4QINFProteinFrizzledSMOHomo sapiensSAG1.5--2.62014-07-2310.1038/ncomms5355
4QIMFProteinFrizzledSMOHomo sapiensANTA XV--2.612014-07-2310.1038/ncomms5355
4O9RFProteinFrizzledSMOHomo sapiensCyclopamine--3.22014-03-0510.1038/ncomms4309
4N4WFProteinFrizzledSMOHomo sapiens-SANT-1-2.82014-01-2210.1038/ncomms5355
4JKVFProteinFrizzledSMOHomo sapiensTaladegib--2.452013-04-2410.1038/nature12167
4JKV (Multimeric) FProteinFrizzledSMOHomo sapiensTaladegib-2.452013-04-2410.1038/nature12167




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 6XBL_nogp.zip



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.