Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:D95 11.02535
2R:R:S96 4.9325406
3R:R:W109 4.63437
4R:R:R117 7.1125455
5R:R:I122 5.42427
6R:R:Y130 7.026537
7R:R:L141 5.4625407
8R:R:R144 7.33486
9R:R:L146 4.2875406
10R:R:T150 3.542527
11R:R:R151 6.6925425
12R:R:W163 11.436528
13R:R:F166 12.69536
14R:R:F187 8.05406
15R:R:E194 5.095446
16R:R:P196 3.345407
17R:R:W206 5.594554
18R:R:Y207 7.284107
19R:R:N219 6.055407
20R:R:F222 5.42333616
21R:R:H227 6.5975407
22R:R:H231 8.5625407
23R:R:Y262 7.282509
24R:R:F268 7.6375408
25R:R:Y269 7.8325468
26R:R:F275 3.48405
27R:R:W281 6.40333617
28R:R:F285 8.225408
29R:R:R296 7.46406
30R:R:R302 6.33254146
31R:R:E305 7.8565147
32R:R:C314 5.89754149
33R:R:V315 4.3875407
34R:R:Y322 6.036519
35R:R:Y323 3.9125408
36R:R:W331 13.104569
37R:R:F332 6.95419
38R:R:Y337 7.33407
39R:R:W339 10.16409
40R:R:H340 5.0075407
41R:R:P352 3.666507
42R:R:F360 5.5675409
43R:R:H361 7.5125469
44R:R:R384 6.262518
45R:R:V386 6.835415
46R:R:F391 4.215418
47R:R:Y394 8.5175415
48R:R:M449 4.655409
49R:R:F455 7.555418
50R:R:F462 5.555407
51R:R:H470 8.97517
52R:R:F474 3.2075406
53R:R:W480 15.5575409
54R:R:F484 4.6275406
55R:R:R485 7.94754105
56R:R:Q491 3.0525404
57R:R:M525 7.2625415
58R:R:F526 6.44833619
59R:R:W535 9.36409
60W:W:?1 8.85751610
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:L141 R:R:P175 11.70973.28YesNo075
2R:R:L141 R:R:V139 11.70972.98YesNo077
3R:R:L141 R:R:L92 25.91668.3YesNo078
4R:R:L92 R:R:R173 27.20242.43NoNo084
5R:R:F166 R:R:R173 29.77113.21YesNo064
6R:R:F166 R:R:L167 22.076517.05YesNo067
7R:R:L167 R:R:W163 22.924312.53NoYes078
8R:R:R151 R:R:W163 51.55116YesYes258
9R:R:R151 R:R:T150 41.53933.88YesYes257
10R:R:I122 R:R:T150 28.63784.56YesYes277
11R:R:I122 R:R:L112 27.0822.85YesNo078
12R:R:L112 R:R:W119 26.22363.42NoNo089
13R:R:Q123 R:R:W119 23.640129.57NoNo089
14R:R:F187 R:R:Q123 22.7775.86YesNo068
15R:R:F187 R:R:I185 19.3157.54YesNo064
16R:R:I185 R:R:P84 14.09326.77NoNo044
17R:R:L83 R:R:P84 13.21953.28NoNo074
18R:R:L83 R:R:N76 12.34496.87NoNo074
19R:R:L73 R:R:N76 10.59284.12NoNo074
20R:R:F166 R:R:Y130 10.58948.25YesYes367
21R:R:W109 R:R:Y130 15.59826.75YesYes377
22R:R:V157 R:R:W109 22.39176.13NoYes067
23R:R:V157 R:R:W163 36.996423.29NoYes068
24R:R:I156 R:R:V157 59.21681.54NoNo056
25R:R:I156 R:R:V210 59.56611.54NoNo055
26R:R:V210 R:R:Y207 59.91585.05NoYes057
27R:R:I215 R:R:Y207 99.700110.88NoYes057
28R:R:F484 R:R:I215 1005.02YesNo065
29R:R:F484 R:R:P220 32.79077.22YesNo068
30R:R:N219 R:R:P220 32.87856.52YesNo078
31R:R:N219 R:R:R384 61.18723.62YesYes078
32R:R:R384 R:R:Y394 96.282810.29YesYes185
33R:R:F391 R:R:Y394 30.4254.13YesYes185
34R:R:F391 R:R:Y322 37.10055.16YesYes189
35R:R:F318 R:R:Y322 33.10698.25NoYes099
36R:R:F318 R:R:V381 31.406119.66NoNo098
37R:R:E305 R:R:V381 30.96147.13YesNo078
38R:R:E305 R:R:R302 23.023612.79YesYes1476
39R:R:R296 R:R:R302 21.8654.26YesYes066
40R:R:D298 R:R:R296 17.64643.57NoYes076
41R:R:D298 R:R:T200 12.86795.78NoNo076
42R:R:T200 R:R:W206 12.38477.28NoYes064
43R:R:E158 R:R:W163 36.96474.36NoYes078
44R:R:E158 R:R:R159 37.69593.49NoNo075
45R:R:R159 R:R:R485 38.0616.4NoYes055
46R:R:R485 R:R:Y207 39.11745.14YesYes1057
47R:R:F484 R:R:L221 67.87763.65YesNo066
48R:R:L221 R:R:N219 32.59749.61NoYes067
49R:R:F222 R:R:L221 35.55713.65YesNo066
50R:R:F222 R:R:R384 33.3544.28YesYes168
51R:R:Y394 W:W:?1 65.35267.01YesYes150
52R:R:F332 W:W:?1 48.80833.64YesYes190
53R:R:F332 R:R:F455 41.33976.43YesYes198
54R:R:F455 R:R:W535 41.110916.04YesYes089
55R:R:W339 R:R:W535 35.7368.43YesYes099
56R:R:L335 R:R:W339 29.937121.64NoYes089
57R:R:I266 R:R:L335 29.49955.71NoNo088
58R:R:I266 R:R:W331 14.10615.87NoYes089
59R:R:I266 R:R:Y262 15.04364.84NoYes089
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:I234 R:R:W281 4.7 1 No Yes 7 7 2 1
R:R:F526 R:R:I234 3.77 1 Yes No 9 7 2 2
R:R:V321 R:R:W281 6.13 0 No Yes 8 7 2 1
R:R:I389 R:R:W281 7.05 0 No Yes 9 7 2 1
R:R:M525 R:R:W281 6.98 1 Yes Yes 5 7 1 1
R:R:F526 R:R:W281 9.02 1 Yes Yes 9 7 2 1
R:R:W281 W:W:?1 4.54 1 Yes Yes 7 0 1 0
R:R:F391 R:R:V321 3.93 1 Yes No 8 8 1 2
R:R:F391 R:R:Y322 5.16 1 Yes Yes 8 9 1 2
R:R:L325 R:R:M525 4.24 1 No Yes 5 5 1 1
R:R:L325 W:W:?1 12.42 1 No Yes 5 0 1 0
R:R:I408 R:R:V329 4.61 1 No No 7 6 1 1
R:R:V329 R:R:V411 4.81 1 No No 6 5 1 2
R:R:V329 W:W:?1 5.94 1 No Yes 6 0 1 0
R:R:F332 R:R:T336 7.78 1 Yes No 9 7 1 2
R:R:F332 R:R:F455 6.43 1 Yes Yes 9 8 1 2
R:R:F332 R:R:M532 9.95 1 Yes No 9 8 1 2
R:R:F332 W:W:?1 3.64 1 Yes Yes 9 0 1 0
R:R:D382 R:R:Y394 12.64 0 No Yes 9 5 2 1
R:R:R384 R:R:Y394 10.29 1 Yes Yes 8 5 2 1
R:R:F391 R:R:Y394 4.13 1 Yes Yes 8 5 1 1
R:R:F391 W:W:?1 3.64 1 Yes Yes 8 0 1 0
R:R:Y394 W:W:?1 7.01 1 Yes Yes 5 0 1 0
R:R:V404 W:W:?1 8.91 0 No Yes 7 0 1 0
R:R:H470 R:R:L405 9 1 Yes No 7 8 1 2
R:R:I408 W:W:?1 11.39 1 No Yes 7 0 1 0
R:R:L412 R:R:V463 7.45 0 No No 7 7 2 1
R:R:F455 R:R:M532 4.98 1 Yes No 8 8 2 2
R:R:F462 R:R:T528 5.19 0 Yes No 7 7 2 1
R:R:V463 W:W:?1 4.46 0 No Yes 7 0 1 0
R:R:H470 R:R:T466 6.85 1 Yes No 7 8 1 1
R:R:T466 W:W:?1 14.7 1 No Yes 8 0 1 0
R:R:C469 R:R:N521 11.02 0 No No 7 8 2 1
R:R:H470 R:R:N521 6.38 1 Yes No 7 8 1 1
R:R:H470 W:W:?1 19.23 1 Yes Yes 7 0 1 0
R:R:N521 W:W:?1 5.48 1 No Yes 8 0 1 0
R:R:F526 R:R:M525 3.73 1 Yes Yes 9 5 2 1
R:R:M525 W:W:?1 14.1 1 Yes Yes 5 0 1 0
R:R:T528 W:W:?1 22.05 0 No Yes 7 0 1 0
R:R:F474 R:R:H470 3.39 0 Yes Yes 6 7 2 1
R:R:E518 W:W:?1 2.64 0 No Yes 7 0 1 0
R:R:A459 W:W:?1 1.57 0 No Yes 7 0 1 0

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 6XBJ_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.49
Number of Linked Nodes 427
Number of Links 465
Number of Hubs 60
Number of Links mediated by Hubs 224
Number of Communities 15
Number of Nodes involved in Communities 72
Number of Links involved in Communities 88
Path Summary
Number Of Nodes in MetaPath 60
Number Of Links MetaPath 59
Number of Shortest Paths 266562
Length Of Smallest Path 3
Average Path Length 22.4777
Length of Longest Path 51
Minimum Path Strength 1.25
Average Path Strength 6.96038
Maximum Path Strength 25.49
Minimum Path Correlation 0.7
Average Path Correlation 0.961039
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 2.77778
Average % Of Corr. Nodes 56.0319
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 51.2266
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases   • G protein-coupled receptor-like
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases   • G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeCLR
PDB ResiduesW:W:?1
Environment DetailsOpen EMBL-EBI Page
CodeCLR
NameCholesterol
Synonyms
  • Cholesterin
  • Cholesterol
  • Cholest-5-en-3beta-ol
  • (3β,14β,17α)-cholest-5-en-3-ol
Identifier
FormulaC27 H46 O
Molecular Weight386.654
SMILES
PubChem5997
Formal Charge0
Total Atoms74
Total Chiral Atoms8
Total Bonds77
Total Aromatic Bonds0



This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
4JKVFProteinFrizzledSMOHomo sapiensTaladegib--2.452013-04-24doi.org/10.1038/nature12167
4N4WFProteinFrizzledSMOHomo sapiens-SANT-1-2.82014-01-22doi.org/10.1038/ncomms5355
4O9RFProteinFrizzledSMOHomo sapiensCyclopamine--3.22014-03-05doi.org/10.1038/ncomms4309
4QIMFProteinFrizzledSMOHomo sapiensANTA XV--2.612014-07-23doi.org/10.1038/ncomms5355
4QINFProteinFrizzledSMOHomo sapiensSAG1.5--2.62014-07-23doi.org/10.1038/ncomms5355
5L7DFProteinFrizzledSMOHomo sapiens-Cholesterol-3.22016-07-20doi.org/10.1038/nature18934
5L7IFProteinFrizzledSMOHomo sapiensVismodegib--3.32016-07-20doi.org/10.1038/nature18934
5V56FProteinFrizzledSMOHomo sapiensTC114--2.92017-05-24doi.org/10.1038/ncomms15383
5V57FProteinFrizzledSMOHomo sapiensTC114--32017-05-24doi.org/10.1038/ncomms15383
6D32FProteinFrizzledSMOXenopus laevisCyclopamineCyclopamine-3.752018-05-23doi.org/10.1016/j.cell.2018.04.029
6D35FProteinFrizzledSMOXenopus laevis-Cholesterol-3.92018-05-23doi.org/10.1016/j.cell.2018.04.029
6OT0FProteinFrizzledSMOHomo sapiens-25(S)-EpoxycholesterolGi1/β1/γ23.842019-06-12doi.org/10.1038/s41586-019-1286-0
6OT0 (No Gprot) FProteinFrizzledSMOHomo sapiens-25(S)-Epoxycholesterol3.842019-06-12doi.org/10.1038/s41586-019-1286-0
6O3CFProteinFrizzledSMOMus musculusSAG21kCholesterol-2.82019-07-03doi.org/10.1038/s41586-019-1355-4
6XBJFProteinFrizzledSMOHomo sapiens-CholesterolGi1/β1/γ23.882020-09-30doi.org/10.1038/s41589-020-0646-2
6XBJ (No Gprot) FProteinFrizzledSMOHomo sapiens-Cholesterol3.882020-09-30doi.org/10.1038/s41589-020-0646-2
6XBKFProteinFrizzledSMOHomo sapiens-CholesterolGi1/β1/γ23.242020-09-30doi.org/10.1038/s41589-020-0646-2
6XBK (No Gprot) FProteinFrizzledSMOHomo sapiens-Cholesterol3.242020-09-30doi.org/10.1038/s41589-020-0646-2
6XBLFProteinFrizzledSMOHomo sapiensSAGCholesterolGi1/β1/γ23.962020-09-30doi.org/10.1038/s41589-020-0646-2
6XBL (No Gprot) FProteinFrizzledSMOHomo sapiensSAGCholesterol3.962020-09-30doi.org/10.1038/s41589-020-0646-2
6XBMFProteinFrizzledSMOHomo sapiens-25(S)-EpoxycholesterolGi1/β1/γ23.142020-09-30doi.org/10.1038/s41589-020-0646-2
6XBM (No Gprot) FProteinFrizzledSMOHomo sapiens-25(S)-Epoxycholesterol3.142020-09-30doi.org/10.1038/s41589-020-0646-2
7ZI0FProteinFrizzledSMOHomo sapiensSAGCholesterol-32022-06-15doi.org/10.1126/sciadv.abm5563
8CXOFProteinFrizzledSMOMus musculus---3.72022-08-03doi.org/10.1038/s41467-022-32125-2




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