Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:T88 4.005417
2R:R:N92 6.73419
3R:R:F112 5.9775408
4R:R:D120 6.7275419
5R:R:L123 5.4625407
6R:R:M128 4.305418
7R:R:W141 3.804507
8R:R:W151 5.192505
9R:R:F158 5.175407
10R:R:H165 8.5625408
11R:R:Y174 5.006508
12R:R:F243 8.935428
13R:R:M250 4.375408
14R:R:I258 5.3125455
15R:R:L261 2.92408
16R:R:E318 3.16478
17R:R:W336 3.426528
18R:R:F339 7.54427
19R:R:F340 11.152527
20R:R:I358 1.8575404
21R:R:W367 6.7625406
22R:R:Y370 7427
23R:R:N376 5.1075419
24R:R:Y380 4.31419
25R:R:T381 3.7925407
26R:R:Y387 6.664508
27L:L:?1 8.1331020
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:T81 R:R:W367 14.9212.13NoYes066
2R:R:V328 R:R:Y380 30.0123.79NoYes089
3R:R:N376 R:R:Y380 25.58945.81YesYes199
4R:R:N376 R:R:P377 79.67654.89YesNo199
5R:R:D120 R:R:P377 61.59873.22YesNo199
6R:R:D120 R:R:S373 99.635.89YesNo099
7R:R:L123 R:R:S373 1003YesNo079
8R:R:L123 R:R:V127 99.96564.47YesNo078
9R:R:V127 R:R:W151 49.48376.13NoYes085
10R:R:S131 R:R:W151 10.31662.47NoYes075
11R:R:D155 R:R:V127 83.27315.84NoNo088
12R:R:W367 R:R:Y370 15.57397.72YesYes067
13R:R:I93 R:R:M121 14.5071.46NoNo037
14R:R:M121 R:R:N92 20.4017.01NoYes079
15R:R:D120 R:R:N92 43.546713.46YesYes199
16R:R:T381 R:R:V95 31.68993.17YesNo079
17R:R:A117 R:R:V95 42.73791.7NoNo099
18R:R:A117 R:R:N92 44.51041.56NoYes099
19R:R:T381 R:R:Y387 22.29394.99YesYes078
20R:R:V95 R:R:V99 10.57481.6NoNo097
21R:R:F112 R:R:H165 32.300810.18YesYes088
22R:R:H165 R:R:V199 39.01226.92YesNo086
23R:R:M164 R:R:V199 41.12893.04NoNo066
24R:R:M164 R:R:T160 43.21123.01NoNo067
25R:R:S242 R:R:T160 48.41683.2NoNo067
26L:L:?1 R:R:S242 49.51824.64YesNo006
27R:R:F112 R:R:K195 28.60956.2YesNo086
28R:R:F158 R:R:L123 30.579910.96YesYes077
29R:R:W141 R:R:W151 34.61542.81YesYes075
30R:R:P142 R:R:W141 16.23641.35NoYes037
31R:R:P142 R:R:Y137 14.2668.34NoNo034
32R:R:G138 R:R:Y137 12.27841.45NoNo054
33R:R:G138 R:R:Y139 10.27362.9NoNo053
34R:R:A149 R:R:L215 10.23063.15NoNo065
35R:R:A149 R:R:P211 12.22681.87NoNo065
36R:R:I210 R:R:P211 12.10638.47NoNo065
37R:R:I210 R:R:L229 10.69524.28NoNo664
38R:R:L229 R:R:V235 14.31772.98NoNo046
39R:R:N343 R:R:V235 21.34744.43NoNo076
40L:L:?1 R:R:N343 23.00812.83YesNo007
41R:R:F158 R:R:L157 23.42113.65YesNo076
42R:R:L157 R:R:S207 19.91057.51NoNo067
43R:R:S207 R:R:Y153 18.16385.09NoNo076
44R:R:P211 R:R:Y153 15.117912.52NoNo056
45R:R:M208 R:R:Y153 10.91893.59NoNo046
46R:R:F332 R:R:L166 59.0692.44NoNo098
47R:R:L166 R:R:N376 52.25438.24NoYes189
48R:R:F332 R:R:M250 57.89887.46NoYes098
49R:R:M250 R:R:S170 25.97663.07YesNo089
50R:R:S170 R:R:T253 24.65156.4NoNo095
51R:R:D172 R:R:K195 28.20516.91NoNo096
52R:R:D172 R:R:H183 28.05891.26NoNo097
53R:R:H183 R:R:V175 27.88681.38NoNo075
54R:R:V175 R:R:Y174 28.10191.26NoYes058
55R:R:Q178 R:R:Y174 20.03966.76NoYes068
56R:R:T257 R:R:Y174 14.24024.99NoYes098
57R:R:C322 R:R:L261 25.01293.17NoYes078
58R:R:C322 R:R:I258 27.43933.27NoYes075
59R:R:I258 R:R:Y254 23.859912.09YesNo059
60R:R:F329 R:R:Y254 26.363815.47NoNo089
61R:R:F329 R:R:M250 32.67083.73NoYes088
62R:R:H182 R:R:N179 10.23063.83NoNo056
63R:R:N179 R:R:Q178 14.20581.32NoNo066
64L:L:?1 R:R:F340 37.162315.06YesYes207
65R:R:F240 R:R:F244 13.19053.22NoNo045
66R:R:F243 R:R:F244 15.3336.43YesNo085
67R:R:F243 R:R:F340 21.941121.43YesYes287
68L:L:?1 R:R:F339 35.114415.06YesYes207
69R:R:F339 R:R:W336 13.03563.01YesYes278
70R:R:F340 R:R:W336 11.29753.01YesYes278
71R:R:E318 R:R:L261 17.81972.65YesYes088
72R:R:F383 R:R:V324 18.5513.93NoNo078
73R:R:V324 R:R:V328 20.53861.6NoNo088
74R:R:M335 R:R:S372 11.917110.73NoNo089
75R:R:S372 R:R:W336 15.85792.47NoYes098
76R:R:F365 R:R:T342 13.079.08NoNo055
77R:R:L362 R:R:T342 23.5334.42NoNo035
78R:R:F339 R:R:L362 25.38292.44YesNo073
79R:R:F383 R:R:L382 10.48871.22NoNo075
80R:R:N92 R:R:P377 19.05874.89YesNo199
81R:R:T253 R:R:Y174 22.35424.99NoYes058
82L:L:?1 R:R:D155 73.66216.79YesNo208
83R:R:I258 R:R:T257 12.67423.04YesNo559
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:D155 R:R:V127 5.84 2 No No 8 8 1 2
R:R:D155 R:R:Y370 10.34 2 No Yes 8 7 1 1
L:L:?1 R:R:D155 16.79 2 Yes No 0 8 0 1
L:L:?1 R:R:V156 10.75 2 Yes No 0 6 0 1
L:L:?1 R:R:S159 7.74 2 Yes No 0 7 0 1
R:R:S242 R:R:T160 3.2 0 No No 6 7 1 2
R:R:N343 R:R:V235 4.43 0 No No 7 6 1 2
R:R:F340 R:R:S239 6.61 2 Yes No 7 6 1 2
L:L:?1 R:R:S242 4.64 2 Yes No 0 6 0 1
R:R:F243 R:R:W336 3.01 2 Yes Yes 8 8 2 2
R:R:F243 R:R:F340 21.43 2 Yes Yes 8 7 2 1
R:R:F339 R:R:W336 3.01 2 Yes Yes 7 8 1 2
R:R:F340 R:R:W336 3.01 2 Yes Yes 7 8 1 2
R:R:F339 R:R:F340 9.65 2 Yes Yes 7 7 1 1
R:R:F339 R:R:L362 2.44 2 Yes No 7 3 1 2
L:L:?1 R:R:F339 15.06 2 Yes Yes 0 7 0 1
L:L:?1 R:R:F340 15.06 2 Yes Yes 0 7 0 1
L:L:?1 R:R:N343 2.83 2 Yes No 0 7 0 1
R:R:V366 R:R:Y370 6.31 2 No Yes 6 7 1 1
L:L:?1 R:R:V366 3.07 2 Yes No 0 6 0 1
R:R:W367 R:R:Y370 7.72 0 Yes Yes 6 7 2 1
L:L:?1 R:R:Y370 3.63 2 Yes Yes 0 7 0 1
R:R:G238 R:R:I237 1.76 0 No No 6 4 1 2
L:L:?1 R:R:G238 1.76 2 Yes No 0 6 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7RAN_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.44
Number of Linked Nodes 243
Number of Links 257
Number of Hubs 27
Number of Links mediated by Hubs 102
Number of Communities 7
Number of Nodes involved in Communities 32
Number of Links involved in Communities 38
Path Summary
Number Of Nodes in MetaPath 84
Number Of Links MetaPath 83
Number of Shortest Paths 30255
Length Of Smallest Path 3
Average Path Length 12.9007
Length of Longest Path 28
Minimum Path Strength 1.215
Average Path Strength 5.45373
Maximum Path Strength 18.245
Minimum Path Correlation 0.7
Average Path Correlation 0.925378
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.7619
Average % Of Corr. Nodes 51.7444
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 34.7055
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
Code3IQ
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
Code3IQ
Name(3R)-3-methyl-5-(1H-pyrrolo[2,3-b]pyridin-3-yl)-1,2,3,6-tetrahydropyridin-1-ium
Synonyms
Identifier
FormulaC13 H16 N3
Molecular Weight214.286
SMILES
PubChem164575847
Formal Charge1
Total Atoms32
Total Chiral Atoms1
Total Bonds34
Total Aromatic Bonds10

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP28223
Sequence
>7RAN_nogp_Chain_R
LLTAVVIIL TIAGNILVI MAVSLEKKL QNATNYFLM SLAIADMLL 
GFLVMPVSM LTILYGYRW PLPSKLCAV WIYLDVLFS TASIMHLCA 
ISLDRYVAI QNPIHHSRF NSRTKAFLK IIAVWTISV GISMPIPVF 
GLQDDSKVF KEGSCLLAD DNFVLIGSF VSFFIPLTI MVITYFLTI 
KSLQKEATQ SISNEQKAC KVLGIVFFL FVVMWCPFF ITNIMAVIC 
NEDVIGALL NVFVWIGYL SSAVNPLVY TLFNKTYRS AFSRYIQC


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8ZMGAAmine5-Hydroxytryptamine5-HT2AHomo sapiensPimavanserin--3.42024-08-2810.1021/acs.jmedchem.4c01244
8V6UAAmine5-Hydroxytryptamine5-HT2AHomo sapiensPubChem 171392456-chim(NtGi2-Gs-CtGq)/β1/γ232024-05-2910.1126/science.adn6354
8V6U (No Gprot) AAmine5-Hydroxytryptamine5-HT2AHomo sapiensPubChem 171392456-32024-05-2910.1126/science.adn6354
8UWLAAmine5-Hydroxytryptamine5-HT2AHomo sapiensLisuride-chim(NtGi2-Gs-CtGq)/β1/γ22.82024-05-2910.1126/science.adn6354
8UWL (No Gprot) AAmine5-Hydroxytryptamine5-HT2AHomo sapiensLisuride-2.82024-05-2910.1126/science.adn6354
8JT8AAmine5-Hydroxytryptamine5-HT2AHomo sapiens(R)-IHCH-7179--2.72024-02-28To be published
7RANAAmine5-Hydroxytryptamine5-HT2AHomo sapiensPubChem 164575847-chim(NtGi2L-Gs-CtGq)/β1/γ23.452022-07-0610.1038/s41586-022-05258-z
7RAN (No Gprot) AAmine5-Hydroxytryptamine5-HT2AHomo sapiensPubChem 164575847-3.452022-07-0610.1038/s41586-022-05258-z
7WC9AAmine5-Hydroxytryptamine5-HT2AHomo sapiensPubChem 162421364--2.52022-01-2610.1126/science.abl8615
7WC8AAmine5-Hydroxytryptamine5-HT2AHomo sapiensLumateperone--2.452022-01-2610.1126/science.abl8615
7WC7AAmine5-Hydroxytryptamine5-HT2AHomo sapiensLisuride--2.62022-01-2610.1126/science.abl8615
7WC6AAmine5-Hydroxytryptamine5-HT2AHomo sapiensLSD--2.62022-01-2610.1126/science.abl8615
7WC5AAmine5-Hydroxytryptamine5-HT2AHomo sapiensPsilocin--3.22022-01-2610.1126/science.abl8615
7WC4AAmine5-Hydroxytryptamine5-HT2AHomo sapiensSerotonin--3.22022-01-2610.1126/science.abl8615
7VOEAAmine5-Hydroxytryptamine5-HT2AHomo sapiensAripiprazole--2.92021-12-2210.1038/s41593-021-00971-w
7VODAAmine5-Hydroxytryptamine5-HT2AHomo sapiensCariprazine--3.32021-12-2210.1038/s41593-021-00971-w
6WH4AAmine5-Hydroxytryptamine5-HT2AHomo sapiensMethiothepin--3.42020-09-2310.1016/j.cell.2020.08.024
6WH4 (Multimeric) AAmine5-Hydroxytryptamine5-HT2AHomo sapiensMethiothepin-3.42020-09-2310.1016/j.cell.2020.08.024
6WGTAAmine5-Hydroxytryptamine5-HT2AHomo sapiensLSD--3.42020-09-2310.1016/j.cell.2020.08.024
6WGT (Multimeric) AAmine5-Hydroxytryptamine5-HT2AHomo sapiensLSD-3.42020-09-2310.1016/j.cell.2020.08.024
6WHAAAmine5-Hydroxytryptamine5-HT2AHomo sapiensDB13948-chim(NtGi2L-Gs-CtGq)/β1/γ23.362020-09-2310.1016/j.cell.2020.08.024
6WHA (No Gprot) AAmine5-Hydroxytryptamine5-HT2AHomo sapiensDB13948-3.362020-09-2310.1016/j.cell.2020.08.024
6A94AAmine5-Hydroxytryptamine5-HT2AHomo sapiensZotepine--2.92019-02-1310.1038/s41594-018-0180-z
6A93AAmine5-Hydroxytryptamine5-HT2AHomo sapiensRisperidone--32019-02-1310.1038/s41594-018-0180-z




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Download 7RAN_nogp.zip



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