Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:F533 5.0225469
2R:R:L547 5.2375409
3R:R:L559 4.7875478
4R:R:L562 3.435409
5R:R:I566 3.715459
6R:R:H583 6.6125429
7R:R:H585 10.4775429
8R:R:C612 4.345489
9R:R:L624 3.995409
10R:R:W629 10.85529
11R:R:L637 2.9409
12R:R:F639 4.9125408
13R:R:Y660 6.49429
14R:R:P663 3.34609
15R:R:Y674 8.395405
16R:R:Y678 3.94599
17R:R:R680 5.85438
18R:R:Y683 5.9175436
19R:R:W685 7.0175409
20R:R:F692 5.805498
21R:R:L697 3.44407
22R:R:F711 2.87408
23R:R:F722 7.52408
24R:R:T752 4.904519
25R:R:W753 6.084519
26R:R:I759 5.85418
27R:R:Y769 5.8725449
28R:R:F771 5.254519
29R:R:Y783 8.61509
30R:R:L785 3.255408
31R:R:Y797 6.69409
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:S531 R:R:T548 12.56111.6NoNo094
2R:R:S532 R:R:T548 16.99671.6NoNo094
3R:R:L547 R:R:S532 23.82364.5YesNo099
4R:R:S532 R:R:T551 29.33276.4NoNo099
5R:R:F533 R:R:T551 25.39865.19YesNo699
6R:R:F533 R:R:F597 35.88333.22YesNo099
7R:R:F597 R:R:L536 38.19113.65NoNo099
8R:R:L536 R:R:W685 40.055311.39NoYes099
9R:R:H539 R:R:L697 10.84473.86NoYes067
10R:R:L697 R:R:M537 20.55162.83YesNo079
11R:R:L547 R:R:T768 20.07592.95YesNo097
12R:R:I759 R:R:T768 20.442313.68YesNo087
13R:R:F771 R:R:I759 27.53923.77YesYes198
14R:R:F771 R:R:M537 22.00446.22YesNo099
15R:R:I759 R:R:Y540 11.64822.42YesNo086
16R:R:F771 R:R:W753 45.59013.01YesYes199
17R:R:G750 R:R:W753 16.69452.81NoYes099
18R:R:G750 R:R:M630 15.20963.49NoNo099
19R:R:L586 R:R:M630 13.72464.24NoNo099
20R:R:L586 R:R:L590 12.23974.15NoNo099
21R:R:L562 R:R:L590 10.78684.15YesNo099
22R:R:T752 R:R:W753 21.18153.64YesYes199
23R:R:Q778 R:R:T752 19.78012.83NoYes199
24R:R:L782 R:R:Q778 17.98665.32NoNo089
25R:R:G779 R:R:L782 16.05175.13NoNo098
26R:R:G779 R:R:L562 14.11673.42NoYes099
27R:R:C787 R:R:Y783 40.203116.13NoYes099
28R:R:C787 R:R:F569 41.51454.19NoNo099
29R:R:F569 R:R:H583 42.81315.66NoYes099
30R:R:E633 R:R:H583 40.61469.85NoYes299
31R:R:E633 R:R:I582 72.89798.2NoNo298
32R:R:I582 R:R:W629 71.6384.7NoYes289
33R:R:W629 R:R:Y660 79.210611.58YesYes299
34R:R:Y621 R:R:Y660 86.37182.98NoYes069
35R:R:P663 R:R:Y621 87.82465.56YesNo096
36R:R:L624 R:R:P663 90.71743.28YesYes099
37R:R:H620 R:R:L624 94.26595.14NoYes099
38R:R:H620 R:R:S695 95.9185.58NoNo098
39R:R:L686 R:R:S695 84.35973NoNo098
40R:R:L686 R:R:W685 10010.25NoYes099
41R:R:C587 R:R:L562 17.73593.17NoYes089
42R:R:C587 R:R:I566 14.21323.27NoYes089
43R:R:Y783 R:R:Y797 29.22354.96YesYes099
44R:R:W800 R:R:Y797 15.96176.75NoYes069
45R:R:V572 R:R:W800 12.86962.45NoNo096
46R:R:F627 R:R:W753 62.14324.01NoYes099
47R:R:F627 R:R:I703 43.23732.51NoNo099
48R:R:I703 R:R:N707 40.70462.83NoNo099
49R:R:L749 R:R:N707 39.418915.1NoNo099
50R:R:G634 R:R:L749 28.23351.71NoNo099
51R:R:G634 R:R:L637 26.87071.71NoYes099
52R:R:I710 R:R:L637 17.24744.28NoYes079
53R:R:I710 R:R:Y638 15.74312.42NoNo078
54R:R:F639 R:R:Y638 12.69616.19YesNo088
55R:R:E633 R:R:L748 31.325510.6NoNo298
56R:R:C612 R:R:V608 10.92833.42YesNo096
57R:R:R613 R:R:V608 13.93673.92NoNo066
58R:R:R613 R:R:Y678 15.42174.12NoYes069
59R:R:F692 R:R:Y678 12.36186.19YesYes989
60R:R:F692 R:R:L686 25.63646.09YesNo089
61R:R:F627 R:R:V700 73.206513.11NoNo098
62R:R:F696 R:R:W685 73.75293.01NoYes099
63R:R:F696 R:R:V700 73.38013.93NoNo098
64R:R:F692 R:R:G677 16.96453.01YesNo088
65R:R:G677 R:R:Y674 14.88817.24NoYes085
66R:R:S670 R:R:S695 13.89174.89NoNo098
67R:R:C751 R:R:L749 10.58761.59NoNo059
68R:R:H786 R:R:L748 34.719710.29NoNo098
69R:R:H786 R:R:L785 33.37623.86NoYes098
70R:R:I740 R:R:L785 27.77711.43NoYes078
71R:R:I740 R:R:T741 24.93571.52NoNo079
72R:R:L718 R:R:T741 23.46361.47NoNo089
73R:R:L718 R:R:L738 22.02371.38NoNo089
74R:R:K734 R:R:L738 15.98744.23NoNo079
75R:R:F722 R:R:K734 14.43179.93YesNo087
76R:R:V793 R:R:Y797 11.30756.31NoYes099
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 7YDH_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.8
Number of Linked Nodes 253
Number of Links 269
Number of Hubs 31
Number of Links mediated by Hubs 121
Number of Communities 9
Number of Nodes involved in Communities 40
Number of Links involved in Communities 48
Path Summary
Number Of Nodes in MetaPath 77
Number Of Links MetaPath 76
Number of Shortest Paths 32885
Length Of Smallest Path 3
Average Path Length 16.0599
Length of Longest Path 37
Minimum Path Strength 1.25
Average Path Strength 5.40523
Maximum Path Strength 17.275
Minimum Path Correlation 0.7
Average Path Correlation 0.940899
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 3.7037
Average % Of Corr. Nodes 51.9885
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 33.05
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process• response to stimulus   • immune response   • immune system process   • regulation of biological process   • signaling   • biological regulation   • cell-cell signaling   • cellular process   • cell communication   • cellular response to stimulus   • regulation of cellular process   • cell surface receptor signaling pathway   • signal transduction   • cell adhesion   • defense response   • response to stress   • inflammatory response   • G protein-coupled receptor signaling pathway   • cellular anatomical structure   • anchoring junction   • cell junction   • focal adhesion   • cell-substrate junction   • membrane   • extracellular exosome   • membrane-bounded organelle   • extracellular vesicle   • extracellular organelle   • extracellular region   • organelle   • extracellular space   • vesicle
Gene OntologyCellular Component• cellular anatomical structure   • anchoring junction   • cell junction   • focal adhesion   • cell-substrate junction   • membrane   • extracellular exosome   • membrane-bounded organelle   • extracellular vesicle   • extracellular organelle   • extracellular region   • organelle   • extracellular space   • vesicle   • extracellular membrane-bounded organelle   • cell periphery   • plasma membrane   • intracellular anatomical structure   • intracellular vesicle   • intracellular membrane-bounded organelle   • endomembrane system   • intracellular organelle   • cytoplasmic vesicle membrane   • bounding membrane of organelle   • vesicle membrane   • cytoplasmic vesicle   • secretory granule   • secretory vesicle   • cytoplasm   • organelle membrane   • secretory granule membrane   • protein binding   • binding   • G-protein beta-subunit binding   • fibroblast proliferation   • cell population proliferation   • cellular process   • cellular response to nitrogen compound   • cellular response to stimulus   • response to dopamine   • regulation of cellular process   • response to stimulus   • signaling   • cellular response to dopamine   • response to monoamine   • cell communication   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • signal transduction   • regulation of biological process   • G protein-coupled dopamine receptor signaling pathway   • biological regulation   • response to oxygen-containing compound   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to monoamine stimulus   • response to chemical   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to alcohol   • response to hormone   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • synapse   • enzyme binding   • GTPase binding   • protein-containing complex binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • phospholipase C-activating G protein-coupled receptor signaling pathway   • synaptic signaling   • cellular response to acetylcholine   • cell-cell signaling   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • neuron projection   • photoreceptor disc membrane   • photoreceptor outer segment   • plasma membrane bounded cell projection   • cell projection   • photoreceptor cell cilium   • cytosol   • vacuolar membrane   • lytic vacuole   • vacuole   • lytic vacuole membrane   • lysosomal membrane   • lysosome   • guanyl nucleotide binding   • GTP binding   • nucleotide binding   • guanyl ribonucleotide binding   • purine ribonucleotide binding   • purine ribonucleoside triphosphate binding   • nucleoside phosphate binding   • ion binding   • purine nucleotide binding   • anion binding   • heterocyclic compound binding   • carbohydrate derivative binding   • ribonucleotide binding   • small molecule binding   • signaling receptor binding   • G protein-coupled receptor binding   • D5 dopamine receptor binding   • dopamine receptor binding   • GTPase regulator activity   • enzyme regulator activity   • guanyl-nucleotide exchange factor activity   • nucleoside-triphosphatase regulator activity   • molecular function regulator activity   • G-protein beta/gamma-subunit complex binding   • G protein activity   • cation binding   • metal ion binding   • circulatory system process   • regulation of blood pressure   • regulation of biological quality   • blood circulation   • cellular developmental process   • cell differentiation   • regulation of cell motility   • regulation of fibroblast migration   • fibroblast migration   • regulation of locomotion   • ameboidal-type cell migration   • regulation of cell migration   • cell migration   • cell motility   • locomotion   • embryo development ending in birth or egg hatching   • chordate embryonic development   • embryo development   • in utero embryonic development   • regulation of developmental process   • regulation of cell shape   • cell morphogenesis   • regulation of cell morphogenesis   • anatomical structure morphogenesis   • regulation of anatomical structure morphogenesis   • regulation of body fluid levels   • wound healing   • cell activation   • hemostasis   • blood coagulation   • response to stress   • coagulation   • response to wounding   • platelet activation   • branching morphogenesis of an epithelial tube   • angiogenesis   • tube morphogenesis   • epithelial tube morphogenesis   • blood vessel development   • epithelium development   • blood vessel morphogenesis   • tube development   • morphogenesis of an epithelium   • tissue development   • vasculature development   • circulatory system development   • branching involved in blood vessel morphogenesis   • tissue morphogenesis   • morphogenesis of a branching structure   • anatomical structure formation involved in morphogenesis   • morphogenesis of a branching epithelium   • regulation of cellular component organization   • cellular component organization   • cellular component biogenesis   • cellular component assembly   • regulation of postsynapse assembly   • cell junction assembly   • regulation of synapse structure or activity   • synapse organization   • cellular component organization or biogenesis   • regulation of synapse assembly   • postsynapse organization   • postsynapse assembly   • regulation of postsynapse organization   • nervous system development   • regulation of cellular component biogenesis   • regulation of cell junction assembly   • regulation of synapse organization   • cell junction organization   • synapse assembly   • Rho-activating G protein-coupled receptor signaling pathway   • regulation of signaling   • regulation of small GTPase mediated signal transduction   • regulation of signal transduction   • regulation of intracellular signal transduction   • regulation of response to stimulus   • regulation of cell communication   • Rho protein signal transduction   • pigment granule   • melanosome   • brush border membrane   • cluster of actin-based cell projections   • brush border   • apical part of cell   • plasma membrane region   • apical plasma membrane   • cell projection membrane   • postsynapse   • nucleus
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP48960
Sequence
>7YDH_nogp_Chain_R
SSFAILMAH YDVEDWKLT LITRVGLAL SLFCLLLCI LTFLLVRPI 
QGSRTTIHL HLCICLFVG STIFLAGIE NEGGQVGLR CRLVAGLLH 
YCFLAAFCW MSLEGLELY FLVVRVFQG QGLSTRWLC LIGYGVPLL 
IVGVSAAIY SKGYGRPRY CWLDFEQGF LWSFLGPVT FIILCNAVI 
FVTTVWKLT QKFSEINPD MKKLKKARA LTITAIAQL FLLGCTWVF 
GLFIFDDRS LVLTYVFTI LNCLQGAFL YLLHCLLNK KVREEYRKW 
ACLV


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7YDHB2AdhesionAdhesionADGRE5Homo sapiens--chim(NtGi2-G13)/β1/γ23.12023-07-12doi.org/10.1016/j.chembiol.2023.08.003
7YDH (No Gprot) B2AdhesionAdhesionADGRE5Homo sapiens--3.12023-07-12doi.org/10.1016/j.chembiol.2023.08.003
7YDJB2AdhesionAdhesionADGRE5Homo sapiens--chim(NtGi1-G12)/β1/γ23.032023-07-12To be published
7YDJ (No Gprot) B2AdhesionAdhesionADGRE5Homo sapiens--3.032023-07-12To be published
7YDMB2AdhesionAdhesionADGRE5Homo sapiens--chim(NtGi1-Gs-CtGq)/β1/γ22.892023-07-12doi.org/10.1016/j.chembiol.2023.08.003
7YDM (No Gprot) B2AdhesionAdhesionADGRE5Homo sapiens--2.892023-07-12doi.org/10.1016/j.chembiol.2023.08.003
7YDPB2AdhesionAdhesionADGRE5Homo sapiens--chim(NtGi1-Gs)/β1/γ23.12023-07-12doi.org/10.1016/j.chembiol.2023.08.003
7YDP (No Gprot) B2AdhesionAdhesionADGRE5Homo sapiens--3.12023-07-12doi.org/10.1016/j.chembiol.2023.08.003
8IKLB2AdhesionAdhesionADGRE5Homo sapiens--chim(NtGi1L-G13)/β1/γ22.332024-01-24doi.org/10.1016/j.molcel.2023.12.020
8IKL (No Gprot) B2AdhesionAdhesionADGRE5Homo sapiens--2.332024-01-24doi.org/10.1016/j.molcel.2023.12.020
8IKJB2AdhesionAdhesionADGRE5Homo sapiens---3.22024-02-14doi.org/10.1016/j.molcel.2023.12.020




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