Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 9.8961010
2R:R:K6 8.91405
3R:R:Y14 6.44833618
4R:R:F18 4.8775407
5R:R:F32 6.74417
6R:R:I36 3.125405
7R:R:L48 6.3825418
8R:R:L51 6.5375419
9R:R:D55 6.96419
10R:R:K65 6.262517
11R:R:I66 3.9925407
12R:R:F87 4.646526
13R:R:F89 6.02833617
14R:R:Y90 8.94571715
15R:R:Y94 6.93833618
16R:R:W98 7.485415
17R:R:L100 4.72418
18R:R:Y108 5.1025408
19R:R:R121 6.0675407
20R:R:W134 6.2675429
21R:R:F138 4.8225423
22R:R:V144 7.21415
23R:R:V147 1.898514
24R:R:Q148 5.444515
25R:R:F168 5.664514
26R:R:V176 3.332514
27R:R:R180 8.81857715
28R:R:L183 5.135415
29R:R:P191 5.905419
30R:R:Y199 8.242518
31R:R:R201 6.345434
32R:R:V203 2.7725455
33R:R:F231 5.88519
34R:R:F235 7.864519
35R:R:Y238 8.73714717
36R:R:H242 5.58833616
37R:R:P252 6.7225411
38R:R:W254 8.438514
39R:R:R255 9.57615
40R:R:V259 4.015415
41R:R:L264 3.65415
42R:R:N265 8.244519
43R:R:F273 6.4575419
44R:R:Y274 5.728517
45R:R:F275 5.6925417
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:Y90 16.826520.15YesYes105
2R:R:K65 R:R:Y90 33.15458.36YesYes175
3R:R:K65 R:R:Y14 26.42238.36YesYes178
4R:R:I10 R:R:Y14 16.18454.84NoYes058
5R:R:I10 R:R:K6 10.71082.91NoYes055
6R:R:V259 R:R:Y90 26.81933.79YesYes155
7R:R:V259 R:R:Y14 25.91973.79YesYes158
8R:R:I66 R:R:Y14 29.85184.84YesYes078
9R:R:I15 R:R:I66 11.0365.89NoYes067
10L:L:?1 R:R:Y238 41.111612.09YesYes107
11R:R:S262 R:R:Y238 95.96657.63NoYes187
12R:R:F235 R:R:S262 1003.96YesNo198
13R:R:F235 R:R:N265 23.643212.08YesYes199
14R:R:F18 R:R:I66 13.77293.77YesYes077
15R:R:D269 R:R:N265 29.036612.12NoYes199
16R:R:D269 R:R:D55 16.433710.65NoYes199
17R:R:A266 R:R:D55 15.11594.63NoYes089
18R:R:A266 R:R:L59 13.64193.15NoNo086
19R:R:L59 R:R:N25 12.15954.12NoNo069
20R:R:F235 R:R:L100 61.95463.65YesYes198
21R:R:F273 R:R:L100 86.64533.65YesYes198
22R:R:F273 R:R:L48 60.04146.09YesYes198
23R:R:F32 R:R:L48 19.335212.18YesYes178
24R:R:F32 R:R:Y274 10.55454.13YesYes177
25R:R:L48 R:R:V44 43.67952.98YesNo087
26R:R:E106 R:R:V44 42.34915.7NoNo087
27R:R:E106 R:R:P43 28.584711NoNo087
28R:R:P43 R:R:R121 10.26734.32NoYes077
29R:R:A42 R:R:R121 14.49095.53NoYes077
30R:R:A42 R:R:H45 11.54284.39NoNo077
31R:R:E106 R:R:Y117 12.784611.22NoNo085
32R:R:R121 R:R:Y117 10.14068.23YesNo075
33R:R:G126 R:R:P43 17.84014.06NoNo087
34R:R:G126 R:R:I46 13.44341.76NoNo087
35L:L:?1 R:R:C141 21.69623.64YesNo007
36R:R:C141 R:R:S91 20.19263.44NoNo075
37R:R:F138 R:R:S91 18.73136.61YesNo235
38R:R:F138 R:R:W134 15.36937.02YesYes239
39R:R:S50 R:R:W134 11.24723.71NoYes099
40L:L:?1 R:R:I145 35.60843.27YesNo004
41R:R:F87 R:R:I145 25.57765.02YesNo064
42R:R:F138 R:R:F87 19.84633.22YesYes236
43R:R:D269 R:R:L51 11.382410.86NoYes199
44R:R:F138 R:R:L57 28.06522.44YesNo037
45R:R:L57 R:R:L61 24.55972.77NoNo077
46R:R:L61 R:R:T85 17.80631.47NoNo075
47R:R:F64 R:R:T85 14.448614.27NoNo065
48R:R:F64 R:R:V81 10.85023.93NoNo066
49R:R:A83 R:R:I145 10.46161.62NoNo074
50R:R:Y238 R:R:Y94 23.73197.94YesYes178
51R:R:L187 R:R:Y94 32.71958.21NoYes068
52R:R:H242 R:R:Y94 12.38334.36YesYes168
53R:R:N239 R:R:Y94 15.200411.63NoYes088
54R:R:L187 R:R:W98 24.72864.56NoYes065
55R:R:P191 R:R:W98 24.931414.86YesYes195
56R:R:F235 R:R:T97 19.491514.27YesNo198
57R:R:P191 R:R:T97 29.8563.5YesNo198
58R:R:F231 R:R:F235 22.03835.36YesYes199
59R:R:H140 R:R:L187 11.846914.14NoNo046
60R:R:A101 R:R:P191 34.59481.87NoYes089
61R:R:A101 R:R:V194 32.49573.39NoNo086
62R:R:F231 R:R:T195 25.91129.08YesNo097
63R:R:S104 R:R:T195 24.66119.59NoNo097
64R:R:S104 R:R:Y199 23.824811.45NoYes098
65R:R:I105 R:R:V194 30.38813.07NoNo066
66R:R:C198 R:R:I105 28.27223.27NoNo086
67R:R:F273 R:R:R107 32.67318.55YesNo199
68R:R:C198 R:R:Y108 26.14775.38NoYes088
69R:R:A112 R:R:Y108 11.04025.34NoYes078
70R:R:R201 R:R:Y108 11.04026.17YesYes048
71R:R:R107 R:R:Y199 27.233211.32NoYes198
72R:R:A224 R:R:Y199 42.91932.67NoYes078
73R:R:A224 R:R:F202 31.62562.77NoNo078
74R:R:F202 R:R:V111 25.60717.87NoNo488
75R:R:I205 R:R:V111 23.86283.07NoNo058
76L:L:?1 R:R:Q148 10.74044.58YesYes105
77L:L:?1 R:R:R180 10.592615.32YesYes105
78R:R:R180 R:R:V176 10.45325.23YesYes154
79R:R:F168 R:R:R180 13.08023.21YesYes145
80R:R:F168 R:R:L173 11.29793.65YesNo041
81R:R:C184 R:R:N239 14.79494.72NoNo068
82R:R:C184 R:R:L243 15.36093.17NoNo065
83R:R:L181 R:R:L243 12.77194.15NoNo055
84R:R:F188 R:R:M192 11.38248.71NoNo086
85R:R:F231 R:R:M192 11.61044.98YesNo096
86R:R:A224 R:R:V203 10.34761.7NoYes075
87R:R:I205 R:R:Q209 21.87354.12NoNo055
88R:R:Q209 R:R:R217 17.84853.5NoNo056
89R:R:G213 R:R:R217 14.12763NoNo036
90R:R:G213 R:R:R218 12.08771.5NoNo035
91R:R:R216 R:R:R218 10.03939.6NoNo055
92R:R:P252 R:R:R255 21.7685.76YesYes115
93R:R:P252 R:R:W254 17.172813.51YesYes114
94R:R:Y238 R:R:Y90 45.816613.9YesYes175
95R:R:L51 R:R:L99 10.35184.15YesNo098
96R:R:R255 R:R:Y238 18.887510.29YesYes157
97R:R:L100 R:R:N265 16.33655.49YesYes189
98R:R:F231 R:R:L100 14.16146.09YesYes198
99R:R:F231 R:R:T97 11.71183.89YesNo198
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:Y90 20.15 1 Yes Yes 0 5 0 1
L:L:?1 R:R:C141 3.64 1 Yes No 0 7 0 1
L:L:?1 R:R:V144 13.66 1 Yes Yes 0 5 0 1
L:L:?1 R:R:I145 3.27 1 Yes No 0 4 0 1
L:L:?1 R:R:Q148 4.58 1 Yes Yes 0 5 0 1
L:L:?1 R:R:R180 15.32 1 Yes Yes 0 5 0 1
L:L:?1 R:R:L183 6.35 1 Yes Yes 0 5 0 1
L:L:?1 R:R:Y238 12.09 1 Yes Yes 0 7 0 1
L:L:?1 R:R:H242 7.37 1 Yes Yes 0 6 0 1
L:L:?1 R:R:R255 12.53 1 Yes Yes 0 5 0 1
R:R:F89 R:R:K65 8.69 1 Yes Yes 7 7 2 2
R:R:K65 R:R:Y90 8.36 1 Yes Yes 7 5 2 1
R:R:K65 R:R:V259 4.55 1 Yes Yes 7 5 2 2
R:R:S86 R:R:Y90 5.09 0 No Yes 6 5 2 1
R:R:F87 R:R:S91 5.28 2 Yes No 6 5 2 2
R:R:F87 R:R:I145 5.02 2 Yes No 6 4 2 1
R:R:F89 R:R:Y90 6.19 1 Yes Yes 7 5 2 1
R:R:F89 R:R:V259 3.93 1 Yes Yes 7 5 2 2
R:R:Y238 R:R:Y90 13.9 1 Yes Yes 7 5 1 1
R:R:R255 R:R:Y90 5.14 1 Yes Yes 5 5 1 1
R:R:V259 R:R:Y90 3.79 1 Yes Yes 5 5 2 1
R:R:C141 R:R:S91 3.44 0 No No 7 5 1 2
R:R:I93 R:R:Y94 3.63 1 No Yes 8 8 2 2
R:R:I93 R:R:Y238 6.04 1 No Yes 8 7 2 1
R:R:I93 R:R:S262 9.29 1 No No 8 8 2 2
R:R:L183 R:R:Y94 5.86 1 Yes Yes 5 8 1 2
R:R:Y238 R:R:Y94 7.94 1 Yes Yes 7 8 1 2
R:R:H242 R:R:Y94 4.36 1 Yes Yes 6 8 1 2
R:R:Q148 R:R:V144 4.3 1 Yes Yes 5 5 1 1
R:R:V144 R:R:V179 6.41 1 Yes No 5 4 1 2
R:R:L183 R:R:V144 4.47 1 Yes Yes 5 5 1 1
R:R:F168 R:R:Q148 9.37 1 Yes Yes 4 5 2 1
R:R:Q148 R:R:V176 4.3 1 Yes Yes 5 4 1 2
R:R:Q148 R:R:R180 4.67 1 Yes Yes 5 5 1 1
R:R:F168 R:R:V176 3.93 1 Yes Yes 4 4 2 2
R:R:F168 R:R:R180 3.21 1 Yes Yes 4 5 2 1
R:R:R180 R:R:V176 5.23 1 Yes Yes 5 4 1 2
R:R:H242 R:R:R180 10.16 1 Yes Yes 6 5 1 1
R:R:R180 R:R:S251 3.95 1 Yes No 5 4 1 2
R:R:R180 R:R:R255 19.19 1 Yes Yes 5 5 1 1
R:R:H242 R:R:L183 3.86 1 Yes Yes 6 5 1 1
R:R:H242 R:R:Y238 3.27 1 Yes Yes 6 7 1 1
R:R:R255 R:R:Y238 10.29 1 Yes Yes 5 7 1 1
R:R:S262 R:R:Y238 7.63 1 No Yes 8 7 2 1
R:R:H242 R:R:R255 4.51 1 Yes Yes 6 5 1 1
R:R:P252 R:R:R255 5.76 1 Yes Yes 1 5 2 1
R:R:A83 R:R:I145 1.62 0 No No 7 4 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8T3S_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.98
Number of Linked Nodes 248
Number of Links 301
Number of Hubs 45
Number of Links mediated by Hubs 162
Number of Communities 5
Number of Nodes involved in Communities 73
Number of Links involved in Communities 117
Path Summary
Number Of Nodes in MetaPath 100
Number Of Links MetaPath 99
Number of Shortest Paths 59371
Length Of Smallest Path 3
Average Path Length 12.7593
Length of Longest Path 30
Minimum Path Strength 1.305
Average Path Strength 6.31798
Maximum Path Strength 19.71
Minimum Path Correlation 0.7
Average Path Correlation 0.918092
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.84615
Average % Of Corr. Nodes 44.0069
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 48.7675
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeBUA
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeBUA
NameButyric Acid
SynonymsButyrate
Identifier
FormulaC4 H8 O2
Molecular Weight88.105
SMILES
PubChem264
Formal Charge0
Total Atoms14
Total Chiral Atoms0
Total Bonds13
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtO15552
Sequence
>8T3S_nogp_Chain_R
PDWKSSLIL MAYIIIFLT GLPANLLAL RAFVGRIRQ PQPAPVHIL 
LLSLTLADL LLLLLLPFK IIEAASNLP KVVCALTSF GFYSSIYCS 
TWLLAGISI ERYLGVAFP VQYKLSRRP LYGVIAALV AWVMSFGHC 
TIVIIVQYL CYENFTDNQ LDVVLPVRL ELCLVLFFI PMAVTIFCY 
WRFVWIMLS QPGAQRRRR AVGLAVVTL LNFLVCFGP YNVSHLVGY 
HQRKSPWWR SIAVVFSSL NASLDPLLF YFSSSV


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
9K1DALipidFree Fatty AcidFFA2Homo sapiensButanoic acidCholesterolGi1/β1/γ23.342024-12-1110.1016/j.celrep.2024.115024
9K1D (No Gprot) ALipidFree Fatty AcidFFA2Homo sapiensButanoic acidCholesterol3.342024-12-1110.1016/j.celrep.2024.115024
8J23ALipidFree Fatty AcidFFA2Homo sapiens--Gi1/β1/γ23.22024-04-17To be published
8J23 (No Gprot) ALipidFree Fatty AcidFFA2Homo sapiens--3.22024-04-17To be published
8T3SALipidFree Fatty AcidFFA2Homo sapiensButyric acid-chim(NtGi2L-Gs-CtGq)/β1/γ23.072024-01-2410.1126/sciadv.adj2384
8T3S (No Gprot) ALipidFree Fatty AcidFFA2Homo sapiensButyric acid-3.072024-01-2410.1126/sciadv.adj2384
8J24ALipidFree Fatty AcidFFA2Homo sapiensAcetic acid-Gi1/β1/γ22.62024-01-2410.1038/s41422-023-00914-z
8J24 (No Gprot) ALipidFree Fatty AcidFFA2Homo sapiensAcetic acid-2.62024-01-2410.1038/s41422-023-00914-z
8J22ALipidFree Fatty AcidFFA2Homo sapiensTUG-1375-Gi1/β1/γ23.22024-01-2410.1038/s41422-023-00914-z
8J22 (No Gprot) ALipidFree Fatty AcidFFA2Homo sapiensTUG-1375-3.22024-01-2410.1038/s41422-023-00914-z




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8T3S_nogp.zip



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