Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 7.9561010
2R:R:V20 7.1462
3R:R:R22 6.41405
4R:R:D23 5.6375475
5R:R:F25 3.702575
6R:R:P31 8.3325456
7R:R:F38 4.6325406
8R:R:R63 4.08407
9R:R:N68 6.9875429
10R:R:D92 6.765403
11R:R:W93 10.7775449
12R:R:C100 9.085449
13R:R:R101 13.215427
14R:R:F105 4.745425
15R:R:F107 6.7675416
16R:R:M109 4.3825425
17R:R:Q112 6.822517
18R:R:Y126 6.29714738
19R:R:F127 5.21435
20R:R:W152 4.512529
21R:R:N175 9.174543
22R:R:F180 8.036514
23R:R:E190 6.6975414
24R:R:F193 9.43415
25R:R:F197 6.4825108
26R:R:L201 2.9525106
27R:R:I226 2.134117
28R:R:R251 6.3475416
29R:R:L257 6.4925402
30R:R:R270 4.75402
31R:R:F276 7.27414
32R:R:Y284 6.355417
33R:R:M285 4.525405
34R:R:D290 6.43409
35R:R:Y294 5.685609
36R:R:Y295 6.31505
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:F277 54.891612.81YesNo005
2R:R:F277 R:R:I178 16.0073.77NoNo053
3R:R:I178 R:R:V20 12.160812.29NoYes632
4R:R:D273 R:R:F277 42.01592.39NoNo045
5R:R:D273 R:R:R270 30.923.57NoYes042
6R:R:D23 R:R:R270 18.55492.38YesYes052
7L:L:?1 R:R:Y284 96.883211.31YesYes107
8R:R:E37 R:R:Y284 1003.37NoYes077
9R:R:E37 R:R:M285 98.53644.06NoYes075
10R:R:C243 R:R:M285 94.86043.24NoYes085
11R:R:C243 R:R:N286 94.21867.87NoNo089
12R:R:D290 R:R:N286 60.332612.12YesNo099
13R:R:D290 R:R:D73 25.44985.32YesNo099
14R:R:D73 R:R:N45 22.080113.46NoNo099
15R:R:F74 R:R:N45 41.656110.87NoNo079
16R:R:F74 R:R:L42 15.01994.87NoNo076
17R:R:F38 R:R:L42 10.05063.65YesNo066
18R:R:D290 R:R:P291 24.2394.83YesNo099
19R:R:N45 R:R:P291 21.99263.26NoNo099
20R:R:F74 R:R:L49 24.8426.09NoNo077
21R:R:L49 R:R:W50 22.40112.28NoNo074
22R:R:F54 R:R:W50 17.492NoNo044
23R:R:F54 R:R:H55 12.54013.39NoNo045
24R:R:F301 R:R:H55 10.050610.18NoNo085
25R:R:D290 R:R:Y294 15.40413.45YesYes099
26L:L:?1 R:R:F180 64.81097.47YesYes104
27R:R:F180 R:R:R111 55.76684.28YesNo047
28R:R:F193 R:R:R111 55.659817.1YesNo057
29R:R:F193 R:R:Q112 55.07153.51YesYes157
30R:R:Q112 R:R:T155 52.47987.09YesNo077
31R:R:T155 R:R:W152 43.33373.64NoYes079
32R:R:N68 R:R:W152 35.03364.52YesYes299
33R:R:F67 R:R:N68 30.86163.62NoYes069
34R:R:F67 R:R:W59 28.57639.02NoNo066
35R:R:L56 R:R:W59 21.486911.39NoNo066
36R:R:L56 R:R:R63 20.24219.72NoYes067
37L:L:?1 R:R:Y86 23.40279.25YesNo005
38R:R:W93 R:R:Y86 22.40117.72YesNo095
39R:R:F95 R:R:W93 11.79139.02NoYes079
40R:R:F95 R:R:P99 10.050611.56NoNo075
41R:R:M109 R:R:W152 12.58393.49YesYes259
42R:R:F244 R:R:N286 63.468812.08NoNo099
43R:R:F244 R:R:I115 47.356.28NoNo098
44R:R:I115 R:R:P200 46.31433.39NoNo089
45R:R:G113 R:R:T155 13.31811.82NoNo067
46R:R:G113 R:R:I116 12.02961.76NoNo065
47R:R:I116 R:R:L151 10.73135.71NoNo057
48R:R:P200 R:R:T119 44.21383.5NoNo097
49R:R:I203 R:R:T119 39.89594.56NoNo067
50R:R:C207 R:R:I203 38.79221.64NoNo066
51R:R:C207 R:R:Y126 37.67879.41NoYes068
52R:R:I211 R:R:Y126 22.43513.63NoYes088
53R:R:D273 R:R:I182 12.248411.2NoNo042
54R:R:F240 R:R:F244 21.31193.22NoNo099
55R:R:F197 R:R:F240 14.70393.22YesNo1089
56R:R:I211 R:R:I233 19.91642.94NoNo087
57R:R:I212 R:R:I233 17.494.42NoNo057
58R:R:I212 R:R:I230 13.59537.36NoNo055
59R:R:R63 R:R:S300 11.59682.64YesNo076
60R:R:S298 R:R:S300 10.42981.63NoNo086
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:V83 13.06 1 Yes No 0 6 0 1
L:L:?1 R:R:Y86 9.25 1 Yes No 0 5 0 1
L:L:?1 R:R:L104 3.64 1 Yes No 0 5 0 1
L:L:?1 R:R:F107 10.68 1 Yes Yes 0 6 0 1
L:L:?1 R:R:S179 5.27 1 Yes No 0 5 0 1
L:L:?1 R:R:F180 7.47 1 Yes Yes 0 4 0 1
L:L:?1 R:R:F277 12.81 1 Yes No 0 5 0 1
L:L:?1 R:R:L280 3.64 1 Yes No 0 5 0 1
L:L:?1 R:R:Y284 11.31 1 Yes Yes 0 7 0 1
R:R:E37 R:R:Y284 3.37 0 No Yes 7 7 2 1
R:R:L76 R:R:Y284 3.52 0 No Yes 6 7 2 1
R:R:F107 R:R:V83 5.24 1 Yes No 6 6 1 1
R:R:W93 R:R:Y86 7.72 4 Yes No 9 5 2 1
R:R:F107 R:R:V103 3.93 1 Yes No 6 5 1 2
R:R:L104 R:R:S179 4.5 1 No No 5 5 1 1
R:R:F107 R:R:Y284 7.22 1 Yes Yes 6 7 1 1
R:R:F180 R:R:R111 4.28 1 Yes No 4 7 1 2
R:R:R111 R:R:T283 3.88 0 No No 7 8 2 2
R:R:F277 R:R:I178 3.77 0 No No 5 3 1 2
R:R:F180 R:R:S179 3.96 1 Yes No 4 5 1 1
R:R:F180 R:R:H189 16.97 1 Yes No 4 5 1 2
R:R:F180 R:R:F276 7.5 1 Yes Yes 4 4 1 2
R:R:F276 R:R:L280 4.87 1 Yes No 4 5 2 1
R:R:L280 R:R:T283 8.84 0 No No 5 8 1 2
L:L:?1 R:R:L34 2.43 1 Yes No 0 8 0 1
R:R:D273 R:R:F277 2.39 0 No No 4 5 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9JKS_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.07
Number of Linked Nodes 269
Number of Links 302
Number of Hubs 36
Number of Links mediated by Hubs 142
Number of Communities 11
Number of Nodes involved in Communities 59
Number of Links involved in Communities 73
Path Summary
Number Of Nodes in MetaPath 61
Number Of Links MetaPath 60
Number of Shortest Paths 39959
Length Of Smallest Path 3
Average Path Length 14.6974
Length of Longest Path 38
Minimum Path Strength 1.19
Average Path Strength 6.46229
Maximum Path Strength 18.99
Minimum Path Correlation 0.7
Average Path Correlation 0.917109
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.22581
Average % Of Corr. Nodes 44.6759
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 34.8791
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
Code_L_
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
Code_L_
Name
Synonyms
Identifier
Formula
Molecular Weight
SMILES
PubChem
Formal Charge
Total Atoms
Total Chiral Atoms
Total Bonds
Total Aromatic Bonds

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP49019
Sequence
>9JKS_nogp_Chain_R
NCCVFRDDF IAKVLPPVL GLEFIFGLL GNGLALWIF CFHLKSWKS 
SRIFLFNLA VADFLLIIC LPFVMDYYV RRSDWKFGD IPCRLVLFM 
FAMNRQGSI IFLTVVAVD RYFRVVHPH HALNKISNW TAAIISCLL 
WGITVGLTV HLLKKKLLI QNGTANVCI SFSICHTFR WHEAMFLLE 
FFLPLGIIL FCSARIIWS LRQRQMDRH AKIKRAITF IMVVAIVFV 
ICFLPSVVV RIHIFWLLH TSGTQNCEV YRSVDLAFF ITLSFTYMN 
SMLDPVVYY FSSPSF


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8IHJAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensAcifran-Gi1/β1/γ23.072023-08-30doi.org/10.1038/s41467-023-41650-7
8IHJ (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensAcifran-3.072023-08-30doi.org/10.1038/s41467-023-41650-7
8IHKAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensAcifran--3.212023-08-30doi.org/10.1038/s41467-023-41650-7
9JKSAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensPubChem 44250176-Gi1/β1/γ23.312025-10-29To be published
9JKS (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensPubChem 44250176-3.312025-10-29To be published
9JKTAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiens(2R)-2-hydroxy-3-phenylpropanoic acid-Gi1/β1/γ23.052025-10-29To be published
9JKT (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiens(2R)-2-hydroxy-3-phenylpropanoic acid-3.052025-10-29To be published
9JKVAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensPubChem 2736690-Gi1/β1/γ23.262025-10-29To be published
9JKV (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensPubChem 2736690-3.262025-10-29To be published
9JKXAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensAcifran-Gi1/β1/γ23.182025-10-29To be published
9JKX (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensAcifran-3.182025-10-29To be published
8JEFAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensPubChem 11367166-Gi1/β1/γ22.962024-12-18doi.org/10.1016/j.celrep.2024.114895
8JEF (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensPubChem 11367166-2.962024-12-18doi.org/10.1016/j.celrep.2024.114895
9KT6AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensAcifran-Gi1/β1/γ23.012025-12-1010.1021/acs.jmedchem.4c02567
9KT6 (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensAcifran-3.012025-12-1010.1021/acs.jmedchem.4c02567
9JICAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiens--Gi1/β1/γ23.42025-12-1710.1016/j.celrep.2024.114895
9JIC (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiens--3.42025-12-1710.1016/j.celrep.2024.114895
9JIDAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensNiacin-Gi1/β1/γ22.782025-12-1710.1016/j.celrep.2024.114895
9JID (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensNiacin-2.782025-12-1710.1016/j.celrep.2024.114895




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9JKS_nogp.zip



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