Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 9.77889910
2R:R:I26 7.1725404
3R:R:L30 6.154536
4R:R:P31 7.4925436
5R:R:L34 6.012538
6R:R:N45 7.9075419
7R:R:F67 3.8275406
8R:R:N68 6.475469
9R:R:D73 4.5775419
10R:R:L76 6.955416
11R:R:I77 3.6175415
12R:R:Y87 9.4625435
13R:R:V88 4.065433
14R:R:W93 5.792589
15R:R:R101 7.498547
16R:R:M109 4.05465
17R:R:Q112 6.8585107
18R:R:Y126 6.45571758
19R:R:W152 4.684569
20R:R:T159 3.2725406
21R:R:H161 9.4675408
22R:R:Q170 6.615442
23R:R:I178 4.365403
24R:R:F180 7.405404
25R:R:F186 4.415403
26R:R:F197 6.60333678
27R:R:L201 3.6075476
28R:R:I204 3.325408
29R:R:I226 3.435117
30R:R:I230 3.624115
31R:R:F232 5.558527
32R:R:F240 4.48579
33R:R:F244 7.196579
34R:R:R251 5.45406
35R:R:Y269 3.916504
36R:R:V272 3.6754134
37R:R:F277 8.3275495
38R:R:Y284 7.922517
39R:R:M285 3.8425405
40R:R:L289 3.2775427
41R:R:V293 3.782527
42R:R:Y294 5.64667629
43R:R:Y295 5.0375425
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:I178 51.10327.51YesYes003
2R:R:F21 R:R:I178 36.32933.77NoYes033
3R:R:D273 R:R:F21 23.3225.97NoNo943
4R:R:D273 R:R:I182 24.26325.6NoNo042
5R:R:I182 R:R:Y269 22.13394.84NoYes024
6L:L:?1 R:R:V83 64.65826.53YesNo006
7R:R:L34 R:R:V83 57.8464.47YesNo086
8R:R:I26 R:R:L30 11.44118.56YesYes046
9R:R:D23 R:R:I26 12.32838.4NoYes054
10R:R:F21 R:R:F277 11.60315.36NoYes935
11R:R:F277 R:R:I26 11.37178.79YesYes054
12R:R:L34 R:R:Y87 41.305414.07YesYes385
13R:R:V88 R:R:Y87 34.55493.79YesYes335
14R:R:D85 R:R:V88 28.57584.38NoYes043
15R:R:D85 R:R:R89 26.46973.57NoNo044
16R:R:D92 R:R:R89 24.34814.76NoNo034
17L:L:?1 R:R:Y284 57.77668.22YesYes107
18R:R:E37 R:R:Y284 46.54377.86NoYes077
19R:R:E37 R:R:M288 45.085610.83NoNo076
20R:R:S287 R:R:Y284 20.19756.36NoYes187
21R:R:D73 R:R:S287 21.74824.42YesNo198
22R:R:D73 R:R:P291 13.91761.61YesNo099
23R:R:L289 R:R:M288 44.91592.83YesNo076
24R:R:L289 R:R:V293 62.91472.98YesYes277
25R:R:V293 R:R:Y294 44.82336.31YesYes279
26R:R:L66 R:R:Y294 20.67583.52NoYes289
27R:R:L66 R:R:R63 19.66523.64NoNo087
28R:R:R63 R:R:W59 17.79824NoNo076
29R:R:Y294 R:R:Y295 20.47523.97YesYes295
30L:L:?1 R:R:F180 98.202413.88YesYes004
31R:R:F180 R:R:R251 1003.21YesYes046
32R:R:F193 R:R:R251 99.77634.28NoYes056
33R:R:E196 R:R:F193 94.38367NoNo065
34R:R:E196 R:R:Q112 57.79216.57NoYes1067
35R:R:Q112 R:R:T159 48.51872.83YesYes076
36R:R:M109 R:R:T159 44.65363.01YesYes056
37R:R:M109 R:R:W152 38.3664.65YesYes659
38R:R:N68 R:R:W152 29.37824.52YesYes699
39R:R:F67 R:R:N68 26.59313.62YesYes069
40R:R:F67 R:R:W59 33.20484.01YesNo066
41R:R:F52 R:R:Y295 18.32284.13NoYes075
42R:R:F52 R:R:W59 17.53595.01NoNo076
43R:R:I116 R:R:Q112 32.34072.74NoYes057
44R:R:I116 R:R:V120 15.14431.54NoNo056
45R:R:F65 R:R:V120 12.99957.87NoNo066
46R:R:F65 R:R:S61 11.04775.28NoNo067
47R:R:I116 R:R:L151 15.3144.28NoNo057
48R:R:I147 R:R:L151 13.16932.85NoNo047
49R:R:I147 R:R:T143 11.04771.52NoNo043
50R:R:V236 R:R:V293 16.35553.21NoYes277
51R:R:F232 R:R:V236 14.52715.24YesNo277
52R:R:F232 R:R:R125 24.01649.62YesNo079
53R:R:R125 R:R:S62 16.38641.32NoNo098
54R:R:D124 R:R:S62 12.52892.94NoNo088
55R:R:F232 R:R:Y294 25.35874.13YesYes279
56R:R:D290 R:R:P291 15.22141.61NoNo099
57R:R:D92 R:R:N175 15.707512.12NoNo033
58R:R:N175 R:R:W93 13.50875.65NoYes039
59R:R:E196 R:R:M192 35.49619.47NoNo1065
60R:R:H189 R:R:M192 47.16093.94NoNo055
61R:R:H189 R:R:L162 33.96083.86NoNo053
62R:R:I169 R:R:L162 32.07078.56NoNo013
63R:R:I169 R:R:Q170 30.23451.37NoYes012
64R:R:D97 R:R:Q170 10.84713.92NoYes432
65R:R:I98 R:R:P99 13.13843.39NoNo415
66R:R:Q170 R:R:R101 12.999511.68YesYes427
67R:R:F193 R:R:S247 74.18617.93NoNo056
68R:R:S247 R:R:V248 73.63833.23NoNo068
69R:R:F197 R:R:V248 73.237211.8YesNo088
70R:R:F197 R:R:F244 14.75853.22YesYes789
71R:R:L289 R:R:M285 36.96962.83YesYes075
72R:R:C243 R:R:M285 37.58684.86NoYes085
73R:R:C243 R:R:F244 34.115111.17NoYes789
74R:R:D290 R:R:N286 17.51279.42NoNo099
75R:R:F244 R:R:N286 14.96687.25YesNo799
76R:R:F197 R:R:F240 55.57015.36YesYes789
77R:R:F240 R:R:I204 80.8983.77YesYes098
78R:R:I204 R:R:T119 74.29413.04YesNo087
79R:R:I203 R:R:T119 72.60454.56NoNo067
80R:R:C207 R:R:I203 70.89961.64NoNo066
81R:R:C207 R:R:Y126 67.44339.41NoYes068
82R:R:I211 R:R:Y126 41.69883.63NoYes088
83R:R:I211 R:R:V129 22.97486.14NoNo088
84R:R:L215 R:R:V129 20.89962.98NoNo088
85R:R:H161 R:R:H189 12.714122.69YesNo085
86R:R:E190 R:R:R251 10.46919.3NoYes046
87R:R:I211 R:R:I233 16.82612.94NoNo087
88R:R:I212 R:R:I233 10.84712.94NoNo057
89R:R:D221 R:R:I230 12.99952.8NoYes035
90R:R:I226 R:R:L215 10.46134.28YesNo1178
91R:R:F276 R:R:T279 11.04775.19NoNo046
92R:R:I254 R:R:R251 19.36435.01NoYes056
93R:R:I254 R:R:V272 17.27363.07NoYes054
94R:R:L257 R:R:V272 10.87024.47NoYes1324
95R:R:F240 R:R:F244 32.0634.29YesYes799
96R:R:M192 R:R:Q112 13.56278.16NoYes1057
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:V83 6.53 1 Yes No 0 6 0 1
L:L:?1 R:R:L104 3.64 1 Yes No 0 5 0 1
L:L:?1 R:R:F107 17.08 1 Yes No 0 6 0 1
L:L:?1 R:R:R111 13.85 1 Yes No 0 7 0 1
L:L:?1 R:R:I178 7.51 1 Yes Yes 0 3 0 1
L:L:?1 R:R:F180 13.88 1 Yes Yes 0 4 0 1
L:L:?1 R:R:L280 12.13 1 Yes No 0 5 0 1
L:L:?1 R:R:T283 5.17 1 Yes No 0 8 0 1
L:L:?1 R:R:Y284 8.22 1 Yes Yes 0 7 0 1
R:R:F21 R:R:I178 3.77 9 No Yes 3 3 2 1
R:R:L34 R:R:V83 4.47 3 Yes No 8 6 2 1
R:R:E37 R:R:Y284 7.86 0 No Yes 7 7 2 1
R:R:F107 R:R:L76 3.65 0 No Yes 6 6 1 2
R:R:L76 R:R:Y284 4.69 1 Yes Yes 6 7 2 1
R:R:L76 R:R:S287 3 1 Yes No 6 8 2 2
R:R:L80 R:R:V83 4.47 0 No No 8 6 2 1
R:R:R111 R:R:T283 9.06 1 No No 7 8 1 1
R:R:I178 R:R:S181 4.64 0 Yes No 3 5 1 2
R:R:F180 R:R:S179 3.96 0 Yes No 4 5 1 2
R:R:F180 R:R:R251 3.21 0 Yes Yes 4 6 1 2
R:R:F180 R:R:F276 8.57 0 Yes No 4 4 1 2
R:R:F276 R:R:L280 13.4 0 No No 4 5 2 1
R:R:T283 R:R:Y284 12.48 1 No Yes 8 7 1 1
R:R:S287 R:R:Y284 6.36 1 No Yes 8 7 2 1
R:R:F107 R:R:V103 2.62 0 No No 6 5 1 2
R:R:I178 R:R:V176 1.54 0 Yes No 3 1 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9JKX_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.83
Number of Linked Nodes 271
Number of Links 312
Number of Hubs 43
Number of Links mediated by Hubs 163
Number of Communities 13
Number of Nodes involved in Communities 73
Number of Links involved in Communities 93
Path Summary
Number Of Nodes in MetaPath 97
Number Of Links MetaPath 96
Number of Shortest Paths 42277
Length Of Smallest Path 3
Average Path Length 12.9809
Length of Longest Path 30
Minimum Path Strength 1.36
Average Path Strength 5.804
Maximum Path Strength 15.48
Minimum Path Correlation 0.7
Average Path Correlation 0.925581
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4
Average % Of Corr. Nodes 51.179
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 44.2731
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeP9X
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeP9X
Name(5~{S})-5-methyl-4-oxidanylidene-5-phenyl-furan-2-carboxylic acid
SynonymsAcifran
Identifier
FormulaC12 H10 O4
Molecular Weight218.205
SMILES
PubChem76969700
Formal Charge0
Total Atoms26
Total Chiral Atoms1
Total Bonds27
Total Aromatic Bonds6

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP49019
Sequence
>9JKX_nogp_Chain_R
NCCVFRDDF IAKVLPPVL GLEFIFGLL GNGLALWIF CFHLKSWKS 
SRIFLFNLA VADFLLIIC LPFVMDYYV RRSDWKFGD IPCRLVLFM 
FAMNRQGSI IFLTVVAVD RYFRVVHPH HALNKISNW TAAIISCLL 
WGITVGLTV HLLKKKLLI QNGTANVCI SFSICHTFR WHEAMFLLE 
FFLPLGIIL FCSARIIWS LRQRQMDRH AKIKRAITF IMVVAIVFV 
ICFLPSVVV RIHIFWLLH TSGTQNCEV YRSVDLAFF ITLSFTYMN 
SMLDPVVYY FSSPSF


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8IHJAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensAcifran-Gi1/β1/γ23.072023-08-30doi.org/10.1038/s41467-023-41650-7
8IHJ (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensAcifran-3.072023-08-30doi.org/10.1038/s41467-023-41650-7
8IHKAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensAcifran--3.212023-08-30doi.org/10.1038/s41467-023-41650-7
9JKSAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensPubChem 44250176-Gi1/β1/γ23.312025-10-29To be published
9JKS (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensPubChem 44250176-3.312025-10-29To be published
9JKTAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiens(2R)-2-hydroxy-3-phenylpropanoic acid-Gi1/β1/γ23.052025-10-29To be published
9JKT (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiens(2R)-2-hydroxy-3-phenylpropanoic acid-3.052025-10-29To be published
9JKVAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensPubChem 2736690-Gi1/β1/γ23.262025-10-29To be published
9JKV (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensPubChem 2736690-3.262025-10-29To be published
9JKXAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensAcifran-Gi1/β1/γ23.182025-10-29To be published
9JKX (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensAcifran-3.182025-10-29To be published
8JEFAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensPubChem 11367166-Gi1/β1/γ22.962024-12-18doi.org/10.1016/j.celrep.2024.114895
8JEF (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensPubChem 11367166-2.962024-12-18doi.org/10.1016/j.celrep.2024.114895
9KT6AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensAcifran-Gi1/β1/γ23.012025-12-1010.1021/acs.jmedchem.4c02567
9KT6 (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensAcifran-3.012025-12-1010.1021/acs.jmedchem.4c02567
9JICAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiens--Gi1/β1/γ23.42025-12-1710.1016/j.celrep.2024.114895
9JIC (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiens--3.42025-12-1710.1016/j.celrep.2024.114895
9JIDAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensNiacin-Gi1/β1/γ22.782025-12-1710.1016/j.celrep.2024.114895
9JID (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensNiacin-2.782025-12-1710.1016/j.celrep.2024.114895




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9JKX_nogp.zip



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