Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 12.5186710
2R:R:L30 5.0975406
3R:R:N45 9.095429
4R:R:I51 4.2875407
5R:R:W59 6.6725406
6R:R:I64 3.3425406
7R:R:N68 5.8225409
8R:R:L69 4.455409
9R:R:D73 6.375429
10R:R:F74 7.95407
11R:R:I77 3.33425
12R:R:W93 5.67571719
13R:R:F95 5.86417
14R:R:I98 4.2025411
15R:R:P99 3.5975415
16R:R:R101 7.69417
17R:R:L104 3.986515
18R:R:M109 6.625485
19R:R:Q112 5.36407
20R:R:R125 5.6825429
21R:R:Y126 6.27698
22R:R:F127 5.056505
23R:R:T155 2.295407
24R:R:V176 2.0125401
25R:R:F180 6.662514
26R:R:H189 5.3925415
27R:R:F193 5.154515
28R:R:E196 7.3725406
29R:R:F197 6.092538
30R:R:I226 2.13407
31R:R:F244 4.305639
32R:R:R251 7.485616
33R:R:Y269 6.7454104
34R:R:F276 7.434514
35R:R:M288 3.7825456
36R:R:P291 4.145429
37R:R:Y294 5.73833629
38R:R:Y295 5.50333625
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:L104 R:R:S179 53.79543YesNo155
2R:R:F180 R:R:S179 47.88353.96YesNo145
3R:R:F180 R:R:R251 11.49563.21YesYes146
4L:L:?1 R:R:R111 52.16329.5YesNo007
5R:R:E196 R:R:R111 29.514611.63YesNo067
6R:R:E196 R:R:F193 14.93764.66YesYes065
7R:R:F180 R:R:F276 29.00527.5YesYes144
8R:R:F276 R:R:L280 35.23647.31YesNo045
9R:R:F277 R:R:L280 34.10462.44NoNo055
10R:R:D273 R:R:F277 23.791110.75NoNo045
11L:L:?1 R:R:Y86 50.82333.06YesNo005
12R:R:W93 R:R:Y86 49.24492.89YesNo095
13R:R:P99 R:R:W93 99.29154.05YesYes159
14R:R:I98 R:R:P99 1003.39YesYes115
15R:R:I98 R:R:R101 97.32756.26YesYes117
16R:R:L163 R:R:R101 97.79029.72NoYes047
17R:R:F105 R:R:L163 96.49349.74NoNo054
18R:R:F105 R:R:M109 95.36167.46NoYes855
19R:R:M109 R:R:N110 94.26035.61YesNo058
20R:R:L76 R:R:N110 93.34196.87NoNo068
21R:R:L76 R:R:S287 92.87746.01NoNo068
22R:R:D73 R:R:S287 76.15517.36YesNo298
23R:R:F74 R:R:N45 19.240612.08YesYes079
24R:R:F74 R:R:L42 14.47847.31YesNo076
25R:R:F38 R:R:L42 12.88383.65NoNo066
26R:R:I77 R:R:S287 16.25233.1YesNo258
27R:R:I77 R:R:N45 10.37815.66YesYes259
28R:R:D73 R:R:P291 67.41463.22YesYes299
29R:R:P291 R:R:Y295 68.222.78YesYes295
30R:R:F52 R:R:Y295 31.00527.22NoYes075
31R:R:F52 R:R:I51 12.98972.51NoYes077
32R:R:F52 R:R:L56 18.689912.18NoNo076
33R:R:L56 R:R:W59 17.884614.81NoYes066
34R:R:I64 R:R:W59 12.93595.87YesYes066
35R:R:L69 R:R:Y295 20.59124.69YesYes095
36R:R:F117 R:R:L69 19.35366.09NoYes079
37R:R:F117 R:R:N68 16.88379.67NoYes079
38R:R:I64 R:R:N68 13.43992.83YesYes069
39R:R:A144 R:R:I64 22.6793.25NoYes086
40R:R:A144 R:R:S61 20.94813.42NoNo087
41R:R:F65 R:R:S61 10.48215.28NoNo067
42R:R:E196 R:R:I115 28.21246.83YesNo068
43R:R:I115 R:R:P200 46.28893.39NoNo089
44R:R:P200 R:R:T119 24.03323.5NoNo097
45R:R:I203 R:R:T119 20.88364.56NoNo067
46R:R:C207 R:R:I203 39.98961.64NoNo066
47R:R:C207 R:R:Y126 38.35569.41NoYes068
48R:R:F127 R:R:Y126 20.13024.13YesYes058
49R:R:F127 R:R:H134 10.0759.05YesNo055
50R:R:F244 R:R:R111 26.63763.21YesNo097
51R:R:F244 R:R:I115 22.76336.28YesNo098
52R:R:L199 R:R:P200 21.53643.28NoNo059
53R:R:I203 R:R:L199 20.7495.71NoNo065
54R:R:Y294 R:R:Y295 21.36785.96YesYes295
55R:R:L104 R:R:V103 18.19672.98YesNo055
56R:R:C100 R:R:L104 17.59943.17NoYes195
57R:R:C177 R:R:L104 17.55634.76NoYes195
58R:R:D273 R:R:I182 19.21722.8NoNo042
59R:R:I182 R:R:Y269 18.15726.04NoYes024
60R:R:F193 R:R:S247 10.20593.96YesNo056
61R:R:R125 R:R:Y294 17.25324.12YesYes299
62R:R:I233 R:R:R125 14.68113.76NoYes079
63R:R:I212 R:R:I233 13.02372.94NoNo057
64R:R:V103 R:R:W93 17.50973.68NoYes059
65R:R:C100 R:R:W93 17.50795.22NoYes199
66R:R:C177 R:R:W93 17.507913.06NoYes199
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:V83 12.95 1 Yes No 0 6 0 1
L:L:?1 R:R:Y86 3.06 1 Yes No 0 5 0 1
L:L:?1 R:R:Y87 9.17 1 Yes No 0 5 0 1
L:L:?1 R:R:L104 6.02 1 Yes Yes 0 5 0 1
L:L:?1 R:R:F107 28.59 1 Yes No 0 6 0 1
L:L:?1 R:R:R111 9.5 1 Yes No 0 7 0 1
L:L:?1 R:R:Y284 18.34 1 Yes No 0 7 0 1
R:R:I26 R:R:Y87 3.63 0 No No 4 5 2 1
R:R:V83 R:R:Y87 5.05 1 No No 6 5 1 1
R:R:F107 R:R:V83 5.24 1 No No 6 6 1 1
R:R:W93 R:R:Y86 2.89 1 Yes No 9 5 2 1
R:R:C100 R:R:W93 5.22 1 No Yes 9 9 2 2
R:R:V103 R:R:W93 3.68 0 No Yes 5 9 2 2
R:R:C177 R:R:W93 13.06 1 No Yes 9 9 2 2
R:R:C100 R:R:L104 3.17 1 No Yes 9 5 2 1
R:R:C100 R:R:C177 7.28 1 No No 9 9 2 2
R:R:L104 R:R:V103 2.98 1 Yes No 5 5 1 2
R:R:C177 R:R:L104 4.76 1 No Yes 9 5 2 1
R:R:L104 R:R:S179 3 1 Yes No 5 5 1 2
R:R:F107 R:R:Y284 7.22 1 No No 6 7 1 1
R:R:E196 R:R:R111 11.63 0 Yes No 6 7 2 1
R:R:F244 R:R:R111 3.21 3 Yes No 9 7 2 1
R:R:S91 R:R:Y86 2.54 0 No No 4 5 2 1
R:R:E37 R:R:Y284 2.24 0 No No 7 7 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9JKT_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.71
Number of Linked Nodes 271
Number of Links 310
Number of Hubs 38
Number of Links mediated by Hubs 144
Number of Communities 10
Number of Nodes involved in Communities 61
Number of Links involved in Communities 80
Path Summary
Number Of Nodes in MetaPath 67
Number Of Links MetaPath 66
Number of Shortest Paths 85859
Length Of Smallest Path 3
Average Path Length 20.1245
Length of Longest Path 39
Minimum Path Strength 1.12
Average Path Strength 5.61864
Maximum Path Strength 17.305
Minimum Path Correlation 0.7
Average Path Correlation 0.921536
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.125
Average % Of Corr. Nodes 35.5489
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 43.044
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeHF2
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeHF2
Name(2R)-2-hydroxy-3-phenylpropanoic acid
Synonyms
Identifier
FormulaC9 H10 O3
Molecular Weight166.174
SMILES
PubChem643327
Formal Charge0
Total Atoms22
Total Chiral Atoms1
Total Bonds22
Total Aromatic Bonds6

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP49019
Sequence
>9JKT_nogp_Chain_R
NCCVFRDDF IAKVLPPVL GLEFIFGLL GNGLALWIF CFHLKSWKS 
SRIFLFNLA VADFLLIIC LPFVMDYYV RRSDWKFGD IPCRLVLFM 
FAMNRQGSI IFLTVVAVD RYFRVVHPH HALNKISNW TAAIISCLL 
WGITVGLTV HLLKKKLLI QNGTANVCI SFSICHTFR WHEAMFLLE 
FFLPLGIIL FCSARIIWS LRQRQMDRH AKIKRAITF IMVVAIVFV 
ICFLPSVVV RIHIFWLLH TSGTQNCEV YRSVDLAFF ITLSFTYMN 
SMLDPVVYY FSSPSF


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8IHJAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensAcifran-Gi1/β1/γ23.072023-08-30doi.org/10.1038/s41467-023-41650-7
8IHJ (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensAcifran-3.072023-08-30doi.org/10.1038/s41467-023-41650-7
8IHKAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensAcifran--3.212023-08-30doi.org/10.1038/s41467-023-41650-7
9JKSAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensPubChem 44250176-Gi1/β1/γ23.312025-10-29To be published
9JKS (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensPubChem 44250176-3.312025-10-29To be published
9JKTAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiens(2R)-2-hydroxy-3-phenylpropanoic acid-Gi1/β1/γ23.052025-10-29To be published
9JKT (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiens(2R)-2-hydroxy-3-phenylpropanoic acid-3.052025-10-29To be published
9JKVAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensPubChem 2736690-Gi1/β1/γ23.262025-10-29To be published
9JKV (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensPubChem 2736690-3.262025-10-29To be published
9JKXAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensAcifran-Gi1/β1/γ23.182025-10-29To be published
9JKX (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensAcifran-3.182025-10-29To be published
8JEFAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensPubChem 11367166-Gi1/β1/γ22.962024-12-18doi.org/10.1016/j.celrep.2024.114895
8JEF (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensPubChem 11367166-2.962024-12-18doi.org/10.1016/j.celrep.2024.114895
9KT6AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensAcifran-Gi1/β1/γ23.012025-12-1010.1021/acs.jmedchem.4c02567
9KT6 (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensAcifran-3.012025-12-1010.1021/acs.jmedchem.4c02567
9JICAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiens--Gi1/β1/γ23.42025-12-1710.1016/j.celrep.2024.114895
9JIC (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiens--3.42025-12-1710.1016/j.celrep.2024.114895
9JIDAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensNiacin-Gi1/β1/γ22.782025-12-1710.1016/j.celrep.2024.114895
9JID (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensNiacin-2.782025-12-1710.1016/j.celrep.2024.114895




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Download 9JKT_nogp.zip



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