Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 14.294510
2R:R:L30 3.045406
3R:R:E37 6.485407
4R:R:F38 4.694516
5R:R:W59 6.7406
6R:R:D73 9.225409
7R:R:I77 6.5225405
8R:R:C79 4.6475406
9R:R:W93 8.4875409
10R:R:F107 13.796516
11R:R:Y126 7.54658
12R:R:W152 6.69549
13R:R:T155 4.92407
14R:R:V156 2.1125404
15R:R:T159 3.69406
16R:R:F197 7.92528
17R:R:L201 5.5475426
18R:R:F232 8.978507
19R:R:F240 5.058529
20R:R:F244 7.07409
21R:R:L257 6.2325492
22R:R:R270 7.9375432
23R:R:F276 5.9725464
24R:R:F277 4.155405
25R:R:Y284 8.612517
26R:R:D290 9.63409
27R:R:Y294 7.0725409
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:W93 88.421913.44YesYes009
2R:R:N175 R:R:W93 80.58876.78NoYes039
3R:R:I178 R:R:N175 81.3697.08NoNo033
4R:R:F21 R:R:I178 79.77447.54NoNo033
5R:R:F21 R:R:F277 78.26884.29NoYes035
6R:R:D273 R:R:F277 26.29882.39NoYes045
7R:R:D273 R:R:V272 20.09422.92NoNo044
8R:R:L257 R:R:V272 14.80552.98YesNo024
9L:L:?1 R:R:F107 55.451923.96YesYes106
10R:R:F107 R:R:F38 50.70194.29YesYes166
11R:R:F38 R:R:S287 89.76636.61YesNo068
12R:R:D73 R:R:S287 88.20984.42YesNo098
13R:R:D73 R:R:I77 58.84478.4YesYes095
14R:R:G41 R:R:I77 52.24561.76NoYes085
15R:R:G41 R:R:M288 50.49411.75NoNo086
16R:R:E37 R:R:M288 46.965512.18YesNo076
17R:R:E37 R:R:V33 36.17635.7YesNo076
18R:R:L30 R:R:V33 34.34844.47YesNo066
19R:R:L30 R:R:P31 26.95193.28YesNo066
20R:R:A27 R:R:P31 23.20291.87NoNo046
21L:L:?1 R:R:Y284 52.07189.23YesYes107
22R:R:F38 R:R:Y284 49.7186.19YesYes167
23R:R:A27 R:R:D24 21.31566.18NoNo044
24R:R:D24 R:R:R90 19.41983.57NoNo043
25R:R:K28 R:R:R90 17.515614.85NoNo033
26R:R:K28 R:R:R89 11.75217.33NoNo034
27R:R:D290 R:R:D73 24.517613.31YesYes099
28R:R:D290 R:R:P291 13.681712.88YesNo099
29R:R:G44 R:R:P291 11.7524.06NoNo079
30L:L:?1 R:R:L104 1007.26YesNo005
31R:R:L104 R:R:R101 99.58863.64NoNo057
32R:R:L163 R:R:R101 99.056.07NoNo047
33R:R:F105 R:R:L163 98.63444.87NoNo054
34R:R:F105 R:R:T159 97.6423.89NoYes056
35R:R:M109 R:R:T159 94.46126.02NoYes056
36R:R:M109 R:R:T155 93.90146.02NoYes057
37R:R:T155 R:R:W152 42.5764.85YesYes079
38R:R:V71 R:R:W152 37.25774.9NoYes059
39R:R:F67 R:R:V71 36.5245.24NoNo065
40R:R:F52 R:R:F67 14.06345.36NoNo076
41R:R:F67 R:R:I51 22.60493.77NoNo067
42R:R:H55 R:R:I51 13.1777.95NoNo057
43R:R:H55 R:R:R63 12.252411.28NoNo057
44R:R:I51 R:R:W59 14.50875.87NoYes076
45R:R:F52 R:R:W59 12.0877.02NoYes076
46R:R:I64 R:R:W59 21.2188.22NoYes066
47R:R:A144 R:R:I64 16.56134.87NoNo086
48R:R:A144 R:R:S61 14.22033.42NoNo087
49R:R:I139 R:R:S61 11.87076.19NoNo077
50R:R:I116 R:R:T155 52.44924.56NoYes057
51R:R:I116 R:R:L151 51.52044.28NoNo057
52R:R:L151 R:R:V120 47.79254.47NoNo076
53R:R:C177 R:R:W93 10.46273.92NoYes099
54R:R:C100 R:R:C177 10.07257.28NoNo099
55R:R:F276 R:R:F277 54.66737.5YesYes045
56R:R:F180 R:R:F276 49.39998.57NoYes044
57R:R:F180 R:R:S181 48.44995.28NoNo045
58R:R:R251 R:R:S181 47.35997.91NoNo065
59R:R:L194 R:R:R251 38.49613.64NoNo046
60R:R:L194 R:R:V248 36.16355.96NoNo048
61R:R:F197 R:R:V248 33.686818.35YesNo288
62R:R:F197 R:R:F240 26.23954.29YesYes289
63R:R:F240 R:R:I115 14.96675.02YesNo098
64R:R:F244 R:R:I115 13.643512.56YesNo098
65R:R:F65 R:R:V120 46.86379.18NoNo066
66R:R:D124 R:R:F65 46.11734.78NoNo086
67R:R:D124 R:R:R128 44.590510.72NoNo088
68R:R:N137 R:R:R128 47.60176.03NoNo048
69R:R:H134 R:R:N137 46.56693.83NoNo054
70R:R:F127 R:R:H134 45.52369.05NoNo055
71R:R:F127 R:R:Y126 43.41155.16NoYes058
72R:R:I211 R:R:Y126 28.9413.63NoYes088
73R:R:I211 R:R:R125 26.5492.51NoNo089
74R:R:F232 R:R:R125 25.340321.38YesNo079
75R:R:F232 R:R:I233 17.07033.77YesNo077
76R:R:I212 R:R:I233 14.52992.94NoNo057
77R:R:I212 R:R:I230 11.97257.36NoNo055
78R:R:I230 R:R:L215 10.67482.85NoNo058
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:V83 17.58 1 Yes No 0 6 0 1
L:L:?1 R:R:W93 13.44 1 Yes Yes 0 9 0 1
L:L:?1 R:R:L104 7.26 1 Yes No 0 5 0 1
L:L:?1 R:R:F107 23.96 1 Yes Yes 0 6 0 1
L:L:?1 R:R:Y284 9.23 1 Yes Yes 0 7 0 1
R:R:F107 R:R:F38 4.29 1 Yes Yes 6 6 1 2
R:R:F38 R:R:Y284 6.19 1 Yes Yes 6 7 2 1
R:R:F107 R:R:L76 20.7 1 Yes No 6 6 1 2
R:R:C79 R:R:F107 5.59 0 Yes Yes 6 6 2 1
R:R:V88 R:R:W93 9.81 0 No Yes 3 9 2 1
R:R:N175 R:R:W93 6.78 0 No Yes 3 9 2 1
R:R:C177 R:R:W93 3.92 0 No Yes 9 9 2 1
R:R:L104 R:R:R101 3.64 0 No No 5 7 1 2
R:R:F107 R:R:Y284 14.44 1 Yes Yes 6 7 1 1
R:R:L280 R:R:T283 5.9 1 No No 5 8 2 2
R:R:L280 R:R:Y284 8.21 1 No Yes 5 7 2 1
R:R:T283 R:R:Y284 4.99 1 No Yes 8 7 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9JKV_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.64
Number of Linked Nodes 258
Number of Links 273
Number of Hubs 27
Number of Links mediated by Hubs 102
Number of Communities 9
Number of Nodes involved in Communities 32
Number of Links involved in Communities 35
Path Summary
Number Of Nodes in MetaPath 79
Number Of Links MetaPath 78
Number of Shortest Paths 46852
Length Of Smallest Path 3
Average Path Length 20.232
Length of Longest Path 49
Minimum Path Strength 1.135
Average Path Strength 6.61129
Maximum Path Strength 22.33
Minimum Path Correlation 0.7
Average Path Correlation 0.930502
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 2.94118
Average % Of Corr. Nodes 38.8414
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 33.2459
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
Code_L_
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
Code_L_
Name
Synonyms
Identifier
Formula
Molecular Weight
SMILES
PubChem
Formal Charge
Total Atoms
Total Chiral Atoms
Total Bonds
Total Aromatic Bonds

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP49019
Sequence
>9JKV_nogp_Chain_R
NCCVFRDDF IAKVLPPVL GLEFIFGLL GNGLALWIF CFHLKSWKS 
SRIFLFNLA VADFLLIIC LPFVMDYYV RRSDWKFGD IPCRLVLFM 
FAMNRQGSI IFLTVVAVD RYFRVVHPH HALNKISNW TAAIISCLL 
WGITVGLTV HLLKNGTAN VCISFSICH TFRWHEAMF LLEFFLPLG 
IILFCSARI IWSLRQRQM DRHAKIKRA ITFIMVVAI VFVICFLPS 
VVVRIHIFW LLHTSGTQN CEVYRSVDL AFFITLSFT YMNSMLDPV 
VYYFSSPSF


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8IHJAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensAcifran-Gi1/β1/γ23.072023-08-30doi.org/10.1038/s41467-023-41650-7
8IHJ (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensAcifran-3.072023-08-30doi.org/10.1038/s41467-023-41650-7
8IHKAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensAcifran--3.212023-08-30doi.org/10.1038/s41467-023-41650-7
9JKSAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensPubChem 44250176-Gi1/β1/γ23.312025-10-29To be published
9JKS (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensPubChem 44250176-3.312025-10-29To be published
9JKTAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiens(2R)-2-hydroxy-3-phenylpropanoic acid-Gi1/β1/γ23.052025-10-29To be published
9JKT (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiens(2R)-2-hydroxy-3-phenylpropanoic acid-3.052025-10-29To be published
9JKVAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensPubChem 2736690-Gi1/β1/γ23.262025-10-29To be published
9JKV (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensPubChem 2736690-3.262025-10-29To be published
9JKXAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensAcifran-Gi1/β1/γ23.182025-10-29To be published
9JKX (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensAcifran-3.182025-10-29To be published
8JEFAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensPubChem 11367166-Gi1/β1/γ22.962024-12-18doi.org/10.1016/j.celrep.2024.114895
8JEF (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensPubChem 11367166-2.962024-12-18doi.org/10.1016/j.celrep.2024.114895
9KT6AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensAcifran-Gi1/β1/γ23.012025-12-1010.1021/acs.jmedchem.4c02567
9KT6 (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensAcifran-3.012025-12-1010.1021/acs.jmedchem.4c02567
9JICAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiens--Gi1/β1/γ23.42025-12-1710.1016/j.celrep.2024.114895
9JIC (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiens--3.42025-12-1710.1016/j.celrep.2024.114895
9JIDAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensNiacin-Gi1/β1/γ22.782025-12-1710.1016/j.celrep.2024.114895
9JID (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensNiacin-2.782025-12-1710.1016/j.celrep.2024.114895




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Download 9JKV_nogp.zip



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